RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL18R1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026070

Ensembl transcript IDs: ENSMUST00000087983.8, ENSMUST00000108044.4, ENSMUST00000167723.8, ENSMUST00000193391.6, ENSMUST00000193793.6, ENSMUST00000195684.6

Found 284 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTTGCACCTCCCAAGCCTGGGAGAGAGCCATGTACCCTTGAGATaGAGTAAAGATTGGCTCATAGAAAATGCCTCGGAGCGCATAAAA +
Preference number: 1 (lower is better)
Translates to: LLHLPSLGESHVPLR*SKDWLIENASERIK
Trigger: TTTTATGCGCTCCGAGGCATTTTCTATGAGCCAATCTTTACTGCATCTCAAGGGTACATGGCTCTCTCCCAGGCTTGGGAGGTGCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 90 bp TCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCACTTaGAAGGTCACAAGAAGCTTTGGGCTTCTAGCTCTAGGCCAGCGG +
Preference number: 1 (lower is better)
Translates to: SALDFPRIFLLHSGT*KVTRSFGLLALGQR
Trigger: CCGCTGGCCTAGAGCTAGAAGCCCAAAGCTTCTTGTGACCTTGCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195684.6
3UTR GCA 90 bp GTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGTaGCCCTGTCACAGCAGCATATTACCTGTTAGTGTCTCGTCTCTT +
Preference number: 1 (lower is better)
Translates to: VSFLCWVQAQKHELG*PCHSSILPVSVSSL
Trigger: AAGAGACGAGACACTAACAGGTAATATGCTGCTGTGACAGGGGCACCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR CCA 90 bp CCAAGCCTGGGAGAGAGCCATGTACCCTTGAGATGCAGTAAAGATTaGCTCATAGAAAATGCCTCGGAGCGCATAAAATTCTCCAGTTGG +
Preference number: 1 (lower is better)
Translates to: PSLGESHVPLRCSKD*LIENASERIKFSSW
Trigger: CCAACTGGAGAATTTTATGCGCTCCGAGGCATTTTCTATGAGCCAATCTTTACTGCATCTCAAGGGTACATGGCTCTCTCCCAGGCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR TCA 90 bp TGCTCTCTGGCTCCCATTCCCTCTACTGTGGAATCACTGAGCCAATaGATGAGAGCAGTTACTGCCATCAACAATAAGAGCCATGTTTAC +
Preference number: 1 (lower is better)
Translates to: CSLAPIPSTVESLSQ*MRAVTAINNKSHVY
Trigger: GTAAACATGGCTCTTATTGTTGATGGCAGTAACTGCTCTCATTCATTGGCTCAGTGATTCCACAGTAGAGGGAATGGGAGCCAGAGAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 90 bp ACAACTCTCTTTAGAGAAACAAAAGTATCTTCCAGTGCCGAGAGATaGATATTTCAGCAGGAGGTGTTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: TTLFRETKVSSSAER*IFQQEVLCVCVCVC
Trigger: ACACACACACACACACACACACAACACCTCCTGCTGAAATATGCATCTCTCGGCACTGGAAGATACTTTTGTTTCTCTAAAGAGAGTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 90 bp CAAGTCAACTTTATAAATGACACACAAAATCACTATACACACTGCTaGCACAGAGGCGAGAACAAGCACAGTTACTCCTCCTGTAAAGAC +
Preference number: 1 (lower is better)
Translates to: QVNFINDTQNHYTHC*HRGENKHSYSSCKD
Trigger: GTCTTTACAGGAGGAGTAACTGTGCTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTGATTTTGTGTGTCATTTATAAAGTTGACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR TCA 90 bp TCTCCCAACTCTCTTCTGATGCTAGGTTTTCACACACAGCTGTTGTaGCAGCAGATGTTGAATGAATTTACCTTCTTTTCTCAAGTCAGT +
Preference number: 1 (lower is better)
Translates to: SPNSLLMLGFHTQLL*QQMLNEFTFFSQVS
Trigger: ACTGACTTGAGAAAAGAAGGTAAATTCATTCAACATCTGCTGTCACAACAGCTGTGTGTGAAAACCTAGCATCAGAAGAGAGTTGGGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR GCA 90 bp TATGCTTATGTATATTGTGTTTCTTCTACTGCTATGTTTCTCCTCTaGCCTCTCCACTTGTTGCTCCTATTTGTAGACCCATTTCCCAAC +
Preference number: 1 (lower is better)
Translates to: YAYVYCVSSTAMFLL*PLHLLLLFVDPFPN
Trigger: GTTGGGAAATGGGTCTACAAATAGGAGCAACAAGTGGAGAGGGCAGAGGAGAAACATAGCAGTAGAAGAAACACAATATACATAAGCATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 90 bp AACCAAGTCAACTTTATAAATGACACACAAAATCACTATACACACTaGTGCCACAGAGGCGAGAACAAGCACAGTTACTCCTCCTGTAAA +
Preference number: 1 (lower is better)
Translates to: NQVNFINDTQNHYTH*CHRGENKHSYSSCK
Trigger: TTTACAGGAGGAGTAACTGTGCTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTGATTTTGTGTGTCATTTATAAAGTTGACTTGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR CCA 90 bp CCCACAGACAGCTACTGTTTTGAACCATGGAGGAGGCCCCAGTGTGACAACTCTCCACAACCCACAGGTTaGGAATCACTGCTCCAGAGG +
Preference number: 2 (lower is better)
Translates to: PTDSYCFEPWRRPQCDNSPQPTG*ESLLQR
Trigger: CCTCTGGAGCAGTGATTCCCAACCTGTGGGTTGTGG...AGAGTTGTCACACTGGGGCCTCCTCCATGGTTCAAAACAGTAGCTGTCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 90 bp TCTCACCTCTTGCACCTCCCAAGCCTGGGAGAGAGCCATGTACCCTaGAGATGCAGTAAAGATTGGCTCATAGAAAATGCCTCGGAGCGC +
Preference number: 2 (lower is better)
Translates to: SHLLHLPSLGESHVP*RCSKDWLIENASER
Trigger: GCGCTCCGAGGCATTTTCTATGAGCCAATCTTTACTGCATCTCAAGGGTACATGGCTCTCTCCCAGGCTTGGGAGGTGCAAGAGGTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp GGCCAGCGGTTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACTCCCAAGGCCCCCTCTaGGAGTTCAGGATCACAACC +
Preference number: 2 (lower is better)
Translates to: GQRFSTFLMLQPFNTVLHSQGPL*EFRITT
Trigger: GGTTGTGATCCTGAACTCGCAGAGGGGGCCTTGGGA...GTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAACCGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR TCA 90 bp ACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGGCAGGCACAAAAACATaGGCTAGGGTGCCCCTGTCA +
Preference number: 2 (lower is better)
Translates to: TNSTRRVRRQFTDMRHQKAGTKT*ARVPLS
Trigger: TGACAGGGGCACCCTAGCTCATGTTTTTGTGCCTGC...CTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR GCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTACCCATTTCCCAACCTaGTCTCTGGCTCCCATTCCC +
Preference number: 2 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSTHFPT*SLAPIP
Trigger: GGGAATGGGAGCCAGAGAGCAGGTTGGGAAATGGGT...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTTCCCAAGGCCCCCTCTaGGAGTTCAGGATCACAACC +
Preference number: 2 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLSQGPL*EFRITT
Trigger: GGTTGTGATCCTGAACTCGCAGAGGGGGCCTTGGGA...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR CCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTCCACAACCCACAGGTTaGGAATCACTGCTCCAGAGG +
Preference number: 2 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLPQPTG*ESLLQR
Trigger: CCTCTGGAGCAGTGATTCCCAACCTGTGGGTTGTGG...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR CCA 90 bp CAGGTTCCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGTCCTGCTGCACCTCCCAAGCCTaGGAGAGAGCCATGTACCCT +
Preference number: 2 (lower is better)
Translates to: QVPFQRMYEKVEETRKSCCTSQA*ERAMYP
Trigger: AGGGTACATGGCTCTCTCCCAGGCTTGGGAGGTGCA...GCAGGACTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGGAACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp GCCATCAACAATAAGAGCCATGTTTACAGAGTAGTCTTTAGTGCCCTTGGGAACTTTTCTCTCACCTCTTaGACCTCCCAAGCCTGGGAG +
Preference number: 2 (lower is better)
Translates to: AINNKSHVYRVVFSALGNFSLTS*TSQAWE
Trigger: CTCCCAGGCTTGGGAGGTGCAAGAGGTGAGAGAAAA...GTTCCCAAGGGCACTAAAGACTACTCTGTAAACATGGCTCTTATTGTTGATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACCACTATACACACTGCTaGCACAGAGGCGAGAACAAG +
Preference number: 2 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHHYTHC*HRGENK
Trigger: CTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTG...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR CCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTAGCCTACCTCCATCTTaGCTGAATGGAACGGTATGC +
Preference number: 2 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSSLPPS*LNGTVC
Trigger: GCATACCGTTCCATTCAGCCAAGATGGAGGTAGGCT...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 90 bp GTCAACTGCCACACCAAAACTGCCTGCATGCCCAGGGCACCAGAATaGGCTCATAAAAACAGCAAGCATTTGTTGATTGTTTGCTACAGT +
Preference number: 2 (lower is better)
Translates to: VNCHTKTACMPRAPE*AHKNSKHLLIVCYS
Trigger: ACTGTAGCAAACAATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCAGGCAGTTTTGGTGTGGCAGTTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 90 bp TATTGTGTTTCTTCTACTGCTATGTTTCTCCTCTGCCCTCTCCACTaGTTGCTCCTATTTGTAGACCCATTTCCCAACCTGCTCTCTGGC +
Preference number: 2 (lower is better)
Translates to: YCVSSTAMFLLCPLH*LLLFVDPFPNLLSG
Trigger: GCCAGAGAGCAGGTTGGGAAATGGGTCTACAAATAGGAGCAACAAGTGGAGAGGGCAGAGGAGAAACATAGCAGTAGAAGAAACACAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR TCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTACTCAGGCACTTGGCTaGATGGAACGGTATGCAGAC +
Preference number: 2 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLTQALG*MERYAD
Trigger: GTCTGCATACCGTTCCATTCAGCCAAGTGCCTGAGT...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
3UTR-3UTR TCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTAGAGCCATGTACCCTTaGGATGCAGTAAAGATTGGC +
Preference number: 2 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSRAMYP*DAVKIG
Trigger: GCCAATCTTTACTGCATCTCAAGGGTACATGGCTCT...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTTGGAGATAAAGGTTTaGCAAAGGGGCCACAACCCA +
Preference number: 2 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSLEIKV*QRGHNP
Trigger: TGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR GCA 90 bp AACAAAAGTATCTTCCAGTGCCGAGAGATGCATATTTCAGCAGGAGGTGTTGTGTTGGAGATAAAGGTTTaGCAAAGGGGCCACAACCCA +
Preference number: 2 (lower is better)
Translates to: NKSIFQCREMHISAGGVVLEIKV*QRGHNP
Trigger: TGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA...CACAACACCTCCTGCTGAAATATGCATCTCTCGGCACTGGAAGATACTTTTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTTCCAGTGCCGAGAGATaGATATTTCAGCAGGAGGTG +
Preference number: 2 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLSSAER*IFQQEV
Trigger: CACCTCCTGCTGAAATATGCATCTCTCGGCACTGGA...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR TCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACACACACAGCTGTTGTaGCAGCAGATGTTGAATGAA +
Preference number: 2 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQHTQLL*QQMLNE
Trigger: TTCATTCAACATCTGCTGTCACAACAGCTGTGTGTG...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR TCA 90 bp TGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCAAGCATTTGTTGATTCACACACAGCTGTTGTaGCAGCAGATGTTGAATGAA +
Preference number: 2 (lower is better)
Translates to: CMPRAPELAHKNSKHLLIHTQLL*QQMLNE
Trigger: TTCATTCAACATCTGCTGTCACAACAGCTGTGTGTG...AATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR CCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACGTTTCTTTCCTTTGCTaGGTGCAGGCACAAAAACAT +
Preference number: 2 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHVSFLC*VQAQKH
Trigger: ATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAAC...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
3UTR CAA 90 bp TGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCAAGCATTaGTTGATTGTTTGCTACAGTTTAGCAGCTAGTATGATCCTACAG +
Preference number: 2 (lower is better)
Translates to: CMPRAPELAHKNSKH*LIVCYSLAASMILQ
Trigger: CTGTAGGATCATACTAGCTGCTAAACTGTAGCAAACAATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR TCA 90 bp ATATCGCAGGTTCCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGACACCAAACTCATCCTaGAGCCAAGTTCCTGGAGCT +
Preference number: 2 (lower is better)
Translates to: ISQVPFQRMYEKVEETRKTPNSS*SQVPGA
Trigger: AGCTCCAGGAACTTGGCTTCAGGATGAGTTTGGTGT...CTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGGAACCTGCGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR TCA 90 bp GCCATCAACAATAAGAGCCATGTTTACAGAGTAGTCTTTAGTGCCCTTGGGAACGATGTACGAAAAGGTTaGAGAAACAAGGAAGTCCTG +
Preference number: 2 (lower is better)
Translates to: AINNKSHVYRVVFSALGNDVRKG*RNKEVL
Trigger: CAGGACTTCCTTGTTTCTTCAACCTTTTCGTACATC...GTTCCCAAGGGCACTAAAGACTACTCTGTAAACATGGCTCTTATTGTTGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR GCA 90 bp TTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGTTGGAGATAAAGGTTTaGCAAAGGGGCCACAACCCA +
Preference number: 2 (lower is better)
Translates to: FSTFLMLQPFNTVLHTVVLEIKV*QRGHNP
Trigger: TGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA...CACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR GCA 90 bp CTGTCTGCAATAAACGATATCGCAGGTTCCATTTCAAAGGATGTACGAAAAGGTGGGCATAAATCAGTTTaGCAGCCTACCTCCATCTTG +
Preference number: 2 (lower is better)
Translates to: LSAINDIAGSISKDVRKGGHKSV*QPTSIL
Trigger: CAAGATGGAGGTAGGCTGGCAAACTGATTTATGCCC...ACCTTTTCGTACATCCTTTGAAATGGAACCTGCGATATCGTTTATTGCAGACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR CCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCCACAACCCACAGGTTaGGAATCACTGCTCCAGAGG +
Preference number: 2 (lower is better)
Translates to: YKINFMCRSLADRRTKRSPQPTG*ESLLQR
Trigger: CCTCTGGAGCAGTGATTCCCAACCTGTGGGTTGTGG...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR TCA 90 bp TGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGACAGTTCACAGACATaGGACATCAGAAGAAACACA +
Preference number: 2 (lower is better)
Translates to: WERGSEIISGIIQIKGRPDSSQT*DIRRNT
Trigger: TGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTC...TGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
3UTR CAA 90 bp ATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCAAGCATTTGTaGATTGTTTGCTACAGTTTAGCAGCTAGTATGATCCTACAGATA +
Preference number: 2 (lower is better)
Translates to: MPRAPELAHKNSKHL*IVCYSLAASMILQI
Trigger: TATCTGTAGGATCATACTAGCTGCTAAACTGTAGCAAACAATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR CCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTTCACTCAGGCACTTaGCTGAATGGAACGGTATGC +
Preference number: 2 (lower is better)
Translates to: YKINFMCRSLADRRTKRSLHSGT*LNGTVC
Trigger: GCATACCGTTCCATTCAGCCAAGTGCCTGAGTGAAG...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
3UTR-3UTR CCA 90 bp GTCTCTTTCCGCTATGCGCCTATAGAACAGAACCAAGTCAACTTTATAAATGACGTTTCTTTCCTTTGCTaGGTGCAGGCACAAAAACAT +
Preference number: 2 (lower is better)
Translates to: VSFRYAPIEQNQVNFINDVSFLC*VQAQKH
Trigger: ATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAAC...GTCATTTATAAAGTTGACTTGGTTCTGTTCTATAGGCGCATAGCGGAAAGAGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR TCA 90 bp CTGTCTGCAATAAACGATATCGCAGGTTCCATTTCAAAGGATGTACGAAAAGGTGAATCCACTGTTAGTTaGAAAATTCTGAAGAGGTGC +
Preference number: 2 (lower is better)
Translates to: LSAINDIAGSISKDVRKGESTVS*KILKRC
Trigger: GCACCTCTTCAGAATTTTTCAACTAACAGTGGATTC...ACCTTTTCGTACATCCTTTGAAATGGAACCTGCGATATCGTTTATTGCAGACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR TCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCACACACAGCTGTTGTaGCAGCAGATGTTGAATGAA +
Preference number: 2 (lower is better)
Translates to: YKINFMCRSLADRRTKRSHTQLL*QQMLNE
Trigger: TTCATTCAACATCTGCTGTCACAACAGCTGTGTGTG...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR CAA 90 bp GTGTTTTTGTATGTATGTATGTTTATGTGTGTATGCTTATGTATATaGTGTTTCTTCTACTGCTATGTTTCTCCTCTGCCCTCTCCACTT +
Preference number: 2 (lower is better)
Translates to: VFLYVCMFMCVCLCI*CFFYCYVSPLPSPL
Trigger: AAGTGGAGAGGGCAGAGGAGAAACATAGCAGTAGAAGAAACACAATATACATAAGCATACACACATAAACATACATACATACAAAAACAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CCA 72 bp AAATCAGTTTGCCAGCCTACCTCCATCTTGGCTGAATaGAACGGTATGCAGACAGCTCTAGGCCAGCGGTTC +
Preference number: 3 (lower is better)
Translates to: KSVCQPTSILAE*NGMQTALGQRF
Trigger: GAACCGCTGGCCTAGAGCTGTCTGCATACCGTTCCATTCAGCCAAGATGGAGGTAGGCTGGCAAACTGATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR TCA 72 bp TCCCTAGAATATTCTTGCTTCACTCAGGCACTTGGCTaGATGGAACGGTATGCAGACAGCTCTAGGCCAGCG +
Preference number: 3 (lower is better)
Translates to: SLEYSCFTQALG*MERYADSSRPA
Trigger: CGCTGGCCTAGAGCTGTCTGCATACCGTTCCATTCAGCCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
3UTR GCA 72 bp CTCCCAAGCCTGGGAGAGAGCCATGTACCCTTGAGATaGAGTAAAGATTGGCTCATAGAAAATGCCTCGGAG +
Preference number: 3 (lower is better)
Translates to: LPSLGESHVPLR*SKDWLIENASE
Trigger: CTCCGAGGCATTTTCTATGAGCCAATCTTTACTGCATCTCAAGGGTACATGGCTCTCTCCCAGGCTTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 72 bp CTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGTaGCCCTGTCACAGCAGCATATTACCTGTTAGTGTC +
Preference number: 3 (lower is better)
Translates to: LCWVQAQKHELG*PCHSSILPVSV
Trigger: GACACTAACAGGTAATATGCTGCTGTGACAGGGGCACCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR TCA 72 bp CACAAAATTCAGCCTTTTGAACCACAGCTACCGCTGTaGATAGGCACACGCATGACCTCTAGCAGCGCTTCA +
Preference number: 3 (lower is better)
Translates to: HKIQPFEPQLPL*IGTRMTSSSAS
Trigger: TGAAGCGCTGCTAGAGGTCATGCGTGTGCCTATTCACAGCGGTAGCTGTGGTTCAAAAGGCTGAATTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR TCA 72 bp TGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATaGGCTAGGGTGCCCCTGTCACAGCAGCATATTACC +
Preference number: 3 (lower is better)
Translates to: CFFPLLGAGTKT*ARVPLSQQHIT
Trigger: GGTAATATGCTGCTGTGACAGGGGCACCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR CAA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCTTTGGAGATAAAGGTTaGCCAAAGGGGCCACAACCC +
Preference number: 3 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGFGDKG*PKGPQP
Trigger: GGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAA...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR CAA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTGCTTCACTCAGGCACTaGGCTGAATGGAACGGTATG +
Preference number: 3 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLASLRH*AEWNGM
Trigger: CATACCGTTCCATTCAGCCAAGTGCCTGAGTGAAGC...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
3UTR-3UTR CAA 90 bp GCCATCAACAATAAGAGCCATGTTTACAGAGTAGTCTTTAGTGCCCTTGGGAACCCCAGGGCACCAGAATaGGCTCATAAAAACAGCAAG +
Preference number: 3 (lower is better)
Translates to: AINNKSHVYRVVFSALGNPRAPE*AHKNSK
Trigger: CTTGCTGTTTTTATGAGCCAATTCTGGTGCCCTGGG...GTTCCCAAGGGCACTAAAGACTACTCTGTAAACATGGCTCTTATTGTTGATGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR TCA 72 bp GGAATCACTGCTCCAGAGGAAGAAAGAATAACAAACTaGTTTCTTGTGAATCCCAAGGCCCCCTCTGCGAGT +
Preference number: 3 (lower is better)
Translates to: GITAPEEERITN*FLVNPKAPSAS
Trigger: ACTCGCAGAGGGGGCCTTGGGATTCACAAGAAATCAGTTTGTTATTCTTTCTTCCTCTGGAGCAGTGATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR GCA 72 bp AACAAACTGATTTCTTGTGAATCCCAAGGCCCCCTCTaGGAGTTCAGGATCACAACCAAGGCTCTGTTTCAT +
Preference number: 3 (lower is better)
Translates to: NKLISCESQGPL*EFRITTKALFH
Trigger: ATGAAACAGAGCCTTGGTTGTGATCCTGAACTCGCAGAGGGGGCCTTGGGATTCACAAGAAATCAGTTTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR CCA 72 bp TCAAATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTaGGTGCAGGCACAAAAACATGAGCTAGGGTGCCCC +
Preference number: 3 (lower is better)
Translates to: SNKRKTSVSFLC*VQAQKHELGCP
Trigger: GGGGCACCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTATTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
3UTR-3UTR CAA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCACAAAATTCAGCCTTTaGAACCACAGCTACCGCTGT +
Preference number: 3 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGTKFSL*NHSYRC
Trigger: ACAGCGGTAGCTGTGGTTCAAAAGGCTGAATTTTGT...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR CAA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTTTTGGAGATAAAGGTTaGCCAAAGGGGCCACAACCC +
Preference number: 3 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLFGDKG*PKGPQP
Trigger: GGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAA...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR CAA 90 bp GGCTGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACAGTGTTTCTTTCCTTaGCTGGGTGCAGGCACAAAA +
Preference number: 3 (lower is better)
Translates to: GWERGSEIISGIIQIKGRQCFFP*LGAGTK
Trigger: TTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTG...TCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
3UTR CCA 72 bp GGAGAGAGCCATGTACCCTTGAGATGCAGTAAAGATTaGCTCATAGAAAATGCCTCGGAGCGCATAAAATTC +
Preference number: 3 (lower is better)
Translates to: GESHVPLRCSKD*LIENASERIKF
Trigger: GAATTTTATGCGCTCCGAGGCATTTTCTATGAGCCAATCTTTACTGCATCTCAAGGGTACATGGCTCTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR TCA 72 bp CTTTCTAAGAACTACCTTGCAACACCAAACTCATCCTaGAGCCAAGTTCCTGGAGCTTTCTCTCATCCCATT +
Preference number: 3 (lower is better)
Translates to: LSKNYLATPNSS*SQVPGAFSHPI
Trigger: AATGGGATGAGAGAAAGCTCCAGGAACTTGGCTTCAGGATGAGTTTGGTGTTGCAAGGTAGTTCTTAGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR-3UTR CAA 90 bp TGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCAAGCATTTGTTGATTCTCATCCCATTTCTCTaGTGTTTCCAGCTTTTTCTC +
Preference number: 3 (lower is better)
Translates to: CMPRAPELAHKNSKHLLILIPFL*CFQLFL
Trigger: GAGAAAAAGCTGGAAACACAAGAGAAATGGGATGAG...AATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 72 bp TTTATAAATGACACACAAAATCACTATACACACTGCTaGCACAGAGGCGAGAACAAGCACAGTTACTCCTCC +
Preference number: 3 (lower is better)
Translates to: FINDTQNHYTHC*HRGENKHSYSS
Trigger: GGAGGAGTAACTGTGCTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTGATTTTGTGTGTCATTTATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR CAA 90 bp TTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGACAAAATTCAGCCTTTaGAACCACAGCTACCGCTGT +
Preference number: 3 (lower is better)
Translates to: FSTFLMLQPFNTVLHTVVTKFSL*NHSYRC
Trigger: ACAGCGGTAGCTGTGGTTCAAAAGGCTGAATTTTGT...CACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR-3UTR CAA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAATGTGCGGTTCTATGTTaGTGTTTATGTGTGTTTCTG +
Preference number: 3 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQCAVLC*CLCVFL
Trigger: CAGAAACACACATAAACACAAACATAGAACCGCACA...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 72 bp AACTTTATAAATGACACACAAAATCACTATACACACTaGTGCCACAGAGGCGAGAACAAGCACAGTTACTCC +
Preference number: 3 (lower is better)
Translates to: NFINDTQNHYTH*CHRGENKHSYS
Trigger: GGAGTAACTGTGCTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTGATTTTGTGTGTCATTTATAAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR CAA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTTCACAAAATCCAAGATaGTCCATCAAATTTGGCTGC +
Preference number: 3 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLSQNPR*SIKFGC
Trigger: GCAGCCAAATTTGATGGACAATCTTGGATTTTGTGA...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR GCA 72 bp GCATATTACCTGTTAGTGTCTCGTCTCTTTCCGCTATaGGCCTATAGAACAGAACCAAGTCAACTTTATAAA +
Preference number: 3 (lower is better)
Translates to: AYYLLVSRLFPL*AYRTEPSQLYK
Trigger: TTTATAAAGTTGACTTGGTTCTGTTCTATAGGCGCATAGCGGAAAGAGACGAGACACTAACAGGTAATATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
3UTR-3UTR CAA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCCTTTGTAACTGTGAGTaGGCTACAGTTATGAATCAT +
Preference number: 3 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFLCNCE*ATVMNH
Trigger: ATGATTCATAACTGTAGCCAACTCACAGTTACAAAG...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR TCA 72 bp TTTTCACACACAGCTGTTGTGACAGCAGATGTTGAATaGATTTACCTTCTTTTCTCAAGTCAGTCAAATAGC +
Preference number: 3 (lower is better)
Translates to: FSHTAVVTADVE*IYLLFSSQSNS
Trigger: GCTATTTGACTGACTTGAGAAAAGAAGGTAAATTCATTCAACATCTGCTGTCACAACAGCTGTGTGTGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR TCA 72 bp TTCTCCAGTTGGAATCCACTGTTAGTTGAAAAATTCTaGAGAGGTGCCTTATTTAGGGGCATAAATCAGTTT +
Preference number: 3 (lower is better)
Translates to: FSSWNPLLVEKF*RGALFRGINQF
Trigger: AAACTGATTTATGCCCCTAAATAAGGCACCTCTTCAGAATTTTTCAACTAACAGTGGATTCCAACTGGAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CCA 90 bp CCCACAGACAGCTACTGTTTTGAACCATGGAGGAGGCCCCAGTGTGACAACTCTCGTGTCCCATTATGGTaGACAGAAAACACGCAGGAG +
Preference number: 4 (lower is better)
Translates to: PTDSYCFEPWRRPQCDNSRVPLW*TENTQE
Trigger: CTCCTGCGTGTTTTCTGTCCACCATAATGGGACACG...AGAGTTGTCACACTGGGGCCTCCTCCATGGTTCAAAACAGTAGCTGTCTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CCA 90 bp CACTTGCAAGGTCACAAGAAGCTTTGGGCTTCTAGCTCTAGGCCAGCGGTTCTCCGTGTCCCATTATGGTaGACAGAAAACACGCAGGAG +
Preference number: 4 (lower is better)
Translates to: HLQGHKKLWASSSRPAVLRVPLW*TENTQE
Trigger: CTCCTGCGTGTTTTCTGTCCACCATAATGGGACACG...GAGAACCGCTGGCCTAGAGCTAGAAGCCCAAAGCTTCTTGTGACCTTGCAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp CACTTGCAAGGTCACAAGAAGCTTTGGGCTTCTAGCTCTAGGCCAGCGGTTCTCGCTGTTTCATTCCTGTaGACTGGTGCAGATATGCCA +
Preference number: 4 (lower is better)
Translates to: HLQGHKKLWASSSRPAVLAVSFL*TGADMP
Trigger: TGGCATATCTGCACCAGTGCACAGGAATGAAACAGC...GAGAACCGCTGGCCTAGAGCTAGAAGCCCAAAGCTTCTTGTGACCTTGCAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp GTGCAGGCACAAAAACATGAGCTAGGGTGCCCCTGTCACAGCAGCATATTACCTTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGAT +
Preference number: 4 (lower is better)
Translates to: VQAQKHELGCPCHSSILPLHIRV*AVLFPD
Trigger: ATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAA...AGGTAATATGCTGCTGTGACAGGGGCACCCTAGCTCATGTTTTTGTGCCTGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp CACACCAAAACTGCCTGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCATTCTTCCAGAACCTTaGGTTCATGGAGGGACTGTC +
Preference number: 4 (lower is better)
Translates to: HTKTACMPRAPELAHKNSILPEP*VHGGTV
Trigger: GACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAAT...GCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCAGGCAGTTTTGGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR GCA 90 bp GGCGAGAACAAGCACAGTTACTCCTCCTGTAAAGACATGGCCTGGGATATCAGGTCCTTCCTGTCTTCTTaGACATTAGGGTCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: GENKHSYSSCKDMAWDIRSFLSS*TLGSEL
Trigger: CAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGA...CCTGATATCCCAGGCCATGTCTTTACAGGAGGAGTAACTGTGCTTGTTCTCGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp TTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGAATCACTGCATCCTCCATCTCAACTaGCCAGAATTCCAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: LEIKVCQRGHNPQVGNHCILHLN*PEFQGV
Trigger: CACACCTTGGAATTCTGGCCAGTTGAGATGGAGGAT...GCAGTGATTCCCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACGACTCCTCTCTCCATaGCTTGACGGCTTTTGCGGG +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQRLLSP*LDGFCG
Trigger: CCCGCAAAAGCCGTCAAGCCATGGAGAGAGGAGTCG...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp AACAAAAGTATCTTCCAGTGCCGAGAGATGCATATTTCAGCAGGAGGTGTTGTGCGACTCCTCTCTCCATaGCTTGACGGCTTTTGCGGG +
Preference number: 4 (lower is better)
Translates to: NKSIFQCREMHISAGGVVRLLSP*LDGFCG
Trigger: CCCGCAAAAGCCGTCAAGCCATGGAGAGAGGAGTCG...CACAACACCTCCTGCTGAAATATGCATCTCTCGGCACTGGAAGATACTTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 72 bp TTGCACCTCCCAAGCCTGGGAGAGAGCCATGTACCCTaGAGATGCAGTAAAGATTGGCTCATAGAAAATGCC +
Preference number: 4 (lower is better)
Translates to: LHLPSLGESHVP*RCSKDWLIENA
Trigger: GGCATTTTCTATGAGCCAATCTTTACTGCATCTCAAGGGTACATGGCTCTCTCCCAGGCTTGGGAGGTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 72 bp TCCAGTGCCGAGAGATGCATATTTCAGCAGGAGGTGTaGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 4 (lower is better)
Translates to: SSAERCIFQQEV*CVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACACACAACACCTCCTGCTGAAATATGCATCTCTCGGCACTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR GCA 90 bp AAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGCACTATACACACTGCTaGCACAGAGGCGAGAACAAG +
Preference number: 4 (lower is better)
Translates to: KTSVSFLCWVQAQKHELGHYTHC*HRGENK
Trigger: CTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTG...CCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGACCGTGTCCCATTATGGTaGACAGAAAACACGCAGGAG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVNTLGLTAQDRVPLW*TENTQE
Trigger: CTCCTGCGTGTTTTCTGTCCACCATAATGGGACACG...GTCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACAGCTCTTGGTGTCTATaGCTTCTTCGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHSSWCL*LLRWPR
Trigger: CCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCT...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR CCA 90 bp TACATCTATTTTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGAGCTCTTGGTGTCTATaGCTTCTTCGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: YIYFGDKGLPKGPQPTGWSSWCL*LLRWPR
Trigger: CCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCT...CCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAAATAGATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTAGAACCTTGAGTTCATaGAGGGACTGTCAGCCCTCC +
Preference number: 4 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSRTLSS*RDCQPS
Trigger: GGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCT...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCGACTCCTCTCTCCATaGCTTGACGGCTTTTGCGGG +
Preference number: 4 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLRLLSP*LDGFCG
Trigger: CCCGCAAAAGCCGTCAAGCCATGGAGAGAGGAGTCG...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR CAA 72 bp TCTACTGCTATGTTTCTCCTCTGCCCTCTCCACTTGTaGCTCCTATTTGTAGACCCATTTCCCAACCTGCTC +
Preference number: 4 (lower is better)
Translates to: STAMFLLCPLHL*LLFVDPFPNLL
Trigger: GAGCAGGTTGGGAAATGGGTCTACAAATAGGAGCAACAAGTGGAGAGGGCAGAGGAGAAACATAGCAGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR GCA 90 bp TGTAAACACACTCGGACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACATTCCTGTGCACTGGTaGAGATATGCCACATGGCTT +
Preference number: 4 (lower is better)
Translates to: CKHTRTNSTRRVRRQFTDIPVHW*RYATWL
Trigger: AAGCCATGTGGCATATCTGCACCAGTGCACAGGAAT...GTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGTCCGAGTGTGTTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp TGTAAACACACTCGGACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACGCTGTTTCATTCCTGTaGACTGGTGCAGATATGCCA +
Preference number: 4 (lower is better)
Translates to: CKHTRTNSTRRVRRQFTDAVSFL*TGADMP
Trigger: TGGCATATCTGCACCAGTGCACAGGAATGAAACAGC...GTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGTCCGAGTGTGTTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp TGTAAACACACTCGGACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACTCCTTCCTGTCTTCTTaGACATTAGGGTCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: CKHTRTNSTRRVRRQFTDSFLSS*TLGSEL
Trigger: CAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGA...GTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGTCCGAGTGTGTTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp ACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGCACTATACACACTGCTaGCACAGAGGCGAGAACAAG +
Preference number: 4 (lower is better)
Translates to: TNSTRRVRRQFTDMRHQKHYTHC*HRGENK
Trigger: CTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTG...CTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR GCA 90 bp CTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCCCAACCCTTCCTCTCTACCAGTaGTTCGTGGAGTCCACTCTC +
Preference number: 4 (lower is better)
Translates to: LMLQPFNTVLHTVVKPPTLPLYQ*FVESTL
Trigger: GAGAGTGGACTCCACGAAGCACTGGTAGAGAGGAAG...GGTTGGGGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTGGCTTGACGGCTTTTaGGGGCATCAGGTAAACAAG +
Preference number: 4 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSWLDGF*GHQVNK
Trigger: CTTGTTTACCTGATGCCCGCAAAAGCCGTCAAGCCA...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGACTTCATTCCTGTGCACTaGTGCAGATATGCCACATGG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVNTLGLTAQDFIPVH*CRYATW
Trigger: CCATGTGGCATATCTGCACCAGTGCACAGGAATGAA...GTCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp GACTTCCCTAGAATATTCTTGCTTCACTCAGGCACTTGGCTGAATGGAACGGTACGTGTCCCATTATGGTaGACAGAAAACACGCAGGAG +
Preference number: 4 (lower is better)
Translates to: DFPRIFLLHSGTWLNGTVRVPLW*TENTQE
Trigger: CTCCTGCGTGTTTTCTGTCCACCATAATGGGACACG...TACCGTTCCATTCAGCCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGACGTGTCCCATTATGGTaGACAGAAAACACGCAGGAG +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCKHTRTNSTRRVPLW*TENTQE
Trigger: CTCCTGCGTGTTTTCTGTCCACCATAATGGGACACG...TCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTAGCTCTTGGTGTCTATaGCTTCTTCGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLSSWCL*LLRWPR
Trigger: CCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCT...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTGTTTCTCCAGGACCCTaGGTAACGTCTCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLVSPGP*VTSPQQ
Trigger: TTGCTGTGGAGACGTTACCCAGGGTCCTGGAGAAAC...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGAATCACTGCTTCTCTATCAGTGAATaGATCTCCTCGACAACAGCT +
Preference number: 4 (lower is better)
Translates to: LEIKVCQRGHNPQVGNHCFSISE*ISSTTA
Trigger: AGCTGTTGTCGAGGAGATCCATTCACTGATAGAGAA...GCAGTGATTCCCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTAGAACCTTGAGTTCATaGAGGGACTGTCAGCCCTCC +
Preference number: 4 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLRTLSS*RDCQPS
Trigger: GGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCT...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp TACATCTATTTTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGTGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: YIYFGDKGLPKGPQPTGWCDHEK*LWASFC
Trigger: ACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACA...CCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAAATAGATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp ACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGTGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: TNSTRRVRRQFTDMRHQKCDHEK*LWASFC
Trigger: ACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACA...CTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGAT +
Preference number: 4 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGLHIRV*AVLFPD
Trigger: ATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAA...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp ATGCATATTTCAGCAGGAGGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGAT +
Preference number: 4 (lower is better)
Translates to: MHISAGGVVCVCVCVCVCLHIRV*AVLFPD
Trigger: ATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAA...ACACACACACACACACACACACACACACACAACACCTCCTGCTGAAATATGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR TCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGAT +
Preference number: 4 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSLHIRV*AVLFPD
Trigger: ATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAA...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp GACTTCCCTAGAATATTCTTGCTTCACTCAGGCACTTGGCTGAATGGAACGGTAATTCCTGTGCACTGGTaGAGATATGCCACATGGCTT +
Preference number: 4 (lower is better)
Translates to: DFPRIFLLHSGTWLNGTVIPVHW*RYATWL
Trigger: AAGCCATGTGGCATATCTGCACCAGTGCACAGGAAT...TACCGTTCCATTCAGCCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
CDS-3UTR GCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACGCTGTTTCATTCCTGTaGACTGGTGCAGATATGCCA +
Preference number: 4 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHAVSFL*TGADMP
Trigger: TGGCATATCTGCACCAGTGCACAGGAATGAAACAGC...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGATCCTTCCTGTCTTCTTaGACATTAGGGTCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCKHTRTNSTRSFLSS*TLGSEL
Trigger: CAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGA...TCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp GGCCAGCGGTTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACTCCTTCCTGTCTTCTTaGACATTAGGGTCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: GQRFSTFLMLQPFNTVLHSFLSS*TLGSEL
Trigger: CAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGA...GTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAACCGCTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACACTATACACACTGCTaGCACAGAGGCGAGAACAAG +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQHYTHC*HRGENK
Trigger: CTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTG...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp ACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCCTTCCTCTCTACCAGTaGTTCGTGGAGTCCACTCTC +
Preference number: 4 (lower is better)
Translates to: TFLMLQPFNTVLHTVVKPLPLYQ*FVESTL
Trigger: GAGAGTGGACTCCACGAAGCACTGGTAGAGAGGAAG...GGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCTTCCTCTCTACCAGTaGTTCGTGGAGTCCACTCTC +
Preference number: 4 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLLPLYQ*FVESTL
Trigger: GAGAGTGGACTCCACGAAGCACTGGTAGAGAGGAAG...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TACATCTATTTTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGTTCATTCCTGTGCACTaGTGCAGATATGCCACATGG +
Preference number: 4 (lower is better)
Translates to: YIYFGDKGLPKGPQPTGWFIPVH*CRYATW
Trigger: CCATGTGGCATATCTGCACCAGTGCACAGGAATGAA...CCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAAATAGATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCATCCTCCATCTCAACTaGCCAGAATTCCAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGILHLN*PEFQGV
Trigger: CACACCTTGGAATTCTGGCCAGTTGAGATGGAGGAT...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp CACACCAAAACTGCCTGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCGGATCCTTGGGGTTTTaGATATTTCCTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: HTKTACMPRAPELAHKNSGSLGF*IFPYSS
Trigger: AGAACTGTAAGGAAATATCCAAAACCCCAAGGATCC...GCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCAGGCAGTTTTGGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CCA 90 bp GGCGAGAACAAGCACAGTTACTCCTCCTGTAAAGACATGGCCTGGGATATCAGGGGATCCTTGGGGTTTTaGATATTTCCTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: GENKHSYSSCKDMAWDIRGSLGF*IFPYSS
Trigger: AGAACTGTAAGGAAATATCCAAAACCCCAAGGATCC...CCTGATATCCCAGGCCATGTCTTTACAGGAGGAGTAACTGTGCTTGTTCTCGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp ACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGTACCGTGTCCCATTATaGTGGACAGAAAACACGCAG +
Preference number: 4 (lower is better)
Translates to: TNSTRRVRRQFTDMRHQKYRVPL*WTENTQ
Trigger: CTGCGTGTTTTCTGTCCACCATAATGGGACACGGTA...CTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp GAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGAGCTCTTGGTGTCTATaGCTTCTTCGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: ERGSEIISGIIQIKGRPVSSWCL*LLRWPR
Trigger: CCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCT...CACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR CCA 90 bp ACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCGTTTCTCCAGGACCCTaGGTAACGTCTCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: TFLMLQPFNTVLHTVVKPVSPGP*VTSPQQ
Trigger: TTGCTGTGGAGACGTTACCCAGGGTCCTGGAGAAAC...GGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR CAA 72 bp AGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTaGCTTCACTCAGGCACTTGGCTGAATGGAACGGTA +
Preference number: 4 (lower is better)
Translates to: STVSALDFPRIF*LHSGTWLNGTV
Trigger: TACCGTTCCATTCAGCCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087983.8
3UTR CAA 72 bp TCCAGAGCTCACAAAATCCAAGATTGTCCATCAAATTaGGCTGCACATACCACACCGTCAACTGCCACACCA +
Preference number: 4 (lower is better)
Translates to: SRAHKIQDCPSN*AAHTTPSTATP
Trigger: TGGTGTGGCAGTTGACGGTGTGGTATGTGCAGCCAAATTTGATGGACAATCTTGGATTTTGTGAGCTCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 72 bp AGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTaGCTTCACTCAGGCACTTGCAAGGTCACAAGAAGC +
Preference number: 4 (lower is better)
Translates to: STVSALDFPRIF*LHSGTCKVTRS
Trigger: GCTTCTTGTGACCTTGCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAATGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQCDHEK*LWASFC
Trigger: ACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACA...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp ACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCTGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: TRRVRRQFTDMRHQKKHICDHEK*LWASFC
Trigger: ACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACA...GATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp TTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGAATCACTGCGTTTGTTTCTTTTGGTaGCATTTAAGGTCCAATTGC +
Preference number: 4 (lower is better)
Translates to: LEIKVCQRGHNPQVGNHCVCFFW*HLRSNC
Trigger: GCAATTGGACCTTAAATGTCACCAAAAGAAACAAAC...GCAGTGATTCCCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp AAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGAT +
Preference number: 4 (lower is better)
Translates to: KRKTSVSFLCWVQAQKHELHIRV*AVLFPD
Trigger: ATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAA...CTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp TTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGAATCACTGCAAATCTCAGTATTTTTaGAGCATGCAGTTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: LEIKVCQRGHNPQVGNHCKSQYF*SMQFAF
Trigger: GAAGGCAAACTGCATGCTTCAAAAATACTGAGATTT...GCAGTGATTCCCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp TACATCTATTTTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGCTTTTCTCTATCAGTaGATGGATCTCCTCGACAAC +
Preference number: 4 (lower is better)
Translates to: YIYFGDKGLPKGPQPTGWAFLYQ*MDLLDN
Trigger: GTTGTCGAGGAGATCCATTCACTGATAGAGAAAAGC...CCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAAATAGATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAAATTCTTCCAGAACCTTaGGTTCATGGAGGGACTGTC +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQILPEP*VHGGTV
Trigger: GACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAAT...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACGCACTGGTGCAGATATaGCACATGGCTTCAGATAAA +
Preference number: 4 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHALVQI*HMASDK
Trigger: TTTATCTGAAGCCATGTGGCATATCTGCACCAGTGC...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp ACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCATTCCTGTGCACTGGTaGAGATATGCCACATGGCTT +
Preference number: 4 (lower is better)
Translates to: TRRVRRQFTDMRHQKKHIIPVHW*RYATWL
Trigger: AAGCCATGTGGCATATCTGCACCAGTGCACAGGAAT...GATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp CTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCCCAACCGCTGTTTCATTCCTGTaGACTGGTGCAGATATGCCA +
Preference number: 4 (lower is better)
Translates to: LMLQPFNTVLHTVVKPPTAVSFL*TGADMP
Trigger: TGGCATATCTGCACCAGTGCACAGGAATGAAACAGC...GGTTGGGGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAATCCTTCCTGTCTTCTTaGACATTAGGGTCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQSFLSS*TLGSEL
Trigger: CAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGA...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTATACACACTGCTaGCACAGAGGCGAGAACAAG +
Preference number: 4 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLHYTHC*HRGENK
Trigger: CTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTG...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTTGGCTTGACGGCTTTTaGGGGCATCAGGTAAACAAG +
Preference number: 4 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLWLDGF*GHQVNK
Trigger: CTTGTTTACCTGATGCCCGCAAAAGCCGTCAAGCCA...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp ACTCCAGGCTGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAATCCTCCATCTCAACTaGCCAGAATTCCAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: TPGWERGSEIISGIIQIKILHLN*PEFQGV
Trigger: CACACCTTGGAATTCTGGCCAGTTGAGATGGAGGAT...TTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCAGCCTGGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCAGCTCTTGGTGTCTATaGCTTCTTCGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFSSWCL*LLRWPR
Trigger: CCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCT...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp TGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCATGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: WERGSEIISGIIQIKGRPCDHEK*LWASFC
Trigger: ACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACA...TGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTGCTTTTCTCTATCAGTaGATGGATCTCCTCGACAAC +
Preference number: 4 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLAFLYQ*MDLLDN
Trigger: GTTGTCGAGGAGATCCATTCACTGATAGAGAAAAGC...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp ACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCGCACTGGTGCAGATATaGCACATGGCTTCAGATAAA +
Preference number: 4 (lower is better)
Translates to: TRRVRRQFTDMRHQKKHIALVQI*HMASDK
Trigger: TTTATCTGAAGCCATGTGGCATATCTGCACCAGTGC...GATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp ATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGGCTGTTTCATTCCTGTaGACTGGTGCAGATATGCCA +
Preference number: 4 (lower is better)
Translates to: IKGRPVFLSFAGCRHKNMAVSFL*TGADMP
Trigger: TGGCATATCTGCACCAGTGCACAGGAATGAAACAGC...CATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp AAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGTTGAAGCATGCAGTTTaGCTTCAGAAATCCATGTTG +
Preference number: 4 (lower is better)
Translates to: KTSVSFLCWVQAQKHELGLKHAV*LQKSML
Trigger: CAACATGGATTTCTGAAGGCAAACTGCATGCTTCAA...CCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR GCA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCCACTATACACACTGCTaGCACAGAGGCGAGAACAAG +
Preference number: 4 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFHYTHC*HRGENK
Trigger: CTTGTTCTCGCCTCTGTGGCAGCAGTGTGTATAGTG...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTTTCATTCCTGTGCACTaGTGCAGATATGCCACATGG +
Preference number: 4 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLFIPVH*CRYATW
Trigger: CCATGTGGCATATCTGCACCAGTGCACAGGAATGAA...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp CAGGTTCCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGTCCTGCTTCATTCCTGTGCACTaGTGCAGATATGCCACATGG +
Preference number: 4 (lower is better)
Translates to: QVPFQRMYEKVEETRKSCFIPVH*CRYATW
Trigger: CCATGTGGCATATCTGCACCAGTGCACAGGAATGAA...GCAGGACTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGGAACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CCA 90 bp ATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGTTCATTCCTGTGCACTaGTGCAGATATGCCACATGG +
Preference number: 4 (lower is better)
Translates to: IKGRPVFLSFAGCRHKNMFIPVH*CRYATW
Trigger: CCATGTGGCATATCTGCACCAGTGCACAGGAATGAA...CATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp TGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCATTCATTCCTGTGCACTaGTGCAGATATGCCACATGG +
Preference number: 4 (lower is better)
Translates to: WERGSEIISGIIQIKGRPFIPVH*CRYATW
Trigger: CCATGTGGCATATCTGCACCAGTGCACAGGAATGAA...TGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp CTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTATCCTCCATCTCAACTaGCCAGAATTCCAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: LCLFSTVSALDFPRIFLLILHLN*PEFQGV
Trigger: CACACCTTGGAATTCTGGCCAGTTGAGATGGAGGAT...AAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TGTAAACACACTCGGACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACGGATCCTTGGGGTTTTaGATATTTCCTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: CKHTRTNSTRRVRRQFTDGSLGF*IFPYSS
Trigger: AGAACTGTAAGGAAATATCCAAAACCCCAAGGATCC...GTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGTCCGAGTGTGTTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp CCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGTCCTGCTTGACGTACCGTGTCCCATTATaGTGGACAGAAAACACGCAG +
Preference number: 4 (lower is better)
Translates to: PFQRMYEKVEETRKSCLTYRVPL*WTENTQ
Trigger: CTGCGTGTTTTCTGTCCACCATAATGGGACACGGTA...CGTCAAGCAGGACTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CCA 90 bp GAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTACCGTGTCCCATTATaGTGGACAGAAAACACGCAG +
Preference number: 4 (lower is better)
Translates to: ERGSEIISGIIQIKGRPVYRVPL*WTENTQ
Trigger: CTGCGTGTTTTCTGTCCACCATAATGGGACACGGTA...CACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp ATATCGCAGGTTCCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGGTTTCTCCAGGACCCTaGGTAACGTCTCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: ISQVPFQRMYEKVEETRKVSPGP*VTSPQQ
Trigger: TTGCTGTGGAGACGTTACCCAGGGTCCTGGAGAAAC...CTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGGAACCTGCGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CCA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTTCTCTATCAGTGAATaGATCTCCTCGACAACAGCT +
Preference number: 4 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSFSISE*ISSTTA
Trigger: AGCTGTTGTCGAGGAGATCCATTCACTGATAGAGAA...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp AAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGGTTTGTTTCTTTTGGTaGCATTTAAGGTCCAATTGC +
Preference number: 4 (lower is better)
Translates to: KTSVSFLCWVQAQKHELGVCFFW*HLRSNC
Trigger: GCAATTGGACCTTAAATGTCACCAAAAGAAACAAAC...CCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGACGTTTGTTTCTTTTGGTaGCATTTAAGGTCCAATTGC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVNTLGLTAQDVCFFW*HLRSNC
Trigger: GCAATTGGACCTTAAATGTCACCAAAAGAAACAAAC...GTCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCGTCTTTATTCAATaGAGCACTGCAGTTCAACTC +
Preference number: 4 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHIVFIQ*STAVQL
Trigger: GAGTTGAACTGCAGTGCTTCATTGAATAAAGACGAT...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp TTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGATTCTTCCAGAACCTTaGGTTCATGGAGGGACTGTC +
Preference number: 4 (lower is better)
Translates to: FSTFLMLQPFNTVLHTVVILPEP*VHGGTV
Trigger: GACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAAT...CACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp CGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTTTATTCCTGTGCACTGGTaGAGATATGCCACATGGCTT +
Preference number: 4 (lower is better)
Translates to: RGSEIISGIIQIKGRPVFIPVHW*RYATWL
Trigger: AAGCCATGTGGCATATCTGCACCAGTGCACAGGAAT...AAACACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp TTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGATTCCTGTGCACTGGTaGAGATATGCCACATGGCTT +
Preference number: 4 (lower is better)
Translates to: FSTFLMLQPFNTVLHTVVIPVHW*RYATWL
Trigger: AAGCCATGTGGCATATCTGCACCAGTGCACAGGAAT...CACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp TTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGTCCTTCCTGTCTTCTTaGACATTAGGGTCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: FSTFLMLQPFNTVLHTVVSFLSS*TLGSEL
Trigger: CAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGA...CACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp ACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCACTTGCTTGAAGCATGCAGTTTaGCTTCAGAAATCCATGTTG +
Preference number: 4 (lower is better)
Translates to: TVSALDFPRIFLLHSGTCLKHAV*LQKSML
Trigger: CAACATGGATTTCTGAAGGCAAACTGCATGCTTCAA...GCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCTTGAAGCATGCAGTTTaGCTTCAGAAATCCATGTTG +
Preference number: 4 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGLKHAV*LQKSML
Trigger: CAACATGGATTTCTGAAGGCAAACTGCATGCTTCAA...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGATGCAGATATGCCACATaGCTTCAGATAAAAAGGTTC +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVCKHTRTNSTRCRYAT*LQIKRF
Trigger: GAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA...TCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCGGATCCTTGGGGTTTTaGATATTTCCTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGGSLGF*IFPYSS
Trigger: AGAACTGTAAGGAAATATCCAAAACCCCAAGGATCC...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp GAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCTGTTTTCTCACAAACGTGTCCCATTATGGTaGACAGAAAACACGCAGGAG +
Preference number: 4 (lower is better)
Translates to: ETVHRHETSEETHLFSHKRVPLW*TENTQE
Trigger: CTCCTGCGTGTTTTCTGTCCACCATAATGGGACACG...TTTGTGAGAAAACAGATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTACCGTGTCCCATTATaGTGGACAGAAAACACGCAG +
Preference number: 4 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFYRVPL*WTENTQ
Trigger: CTGCGTGTTTTCTGTCCACCATAATGGGACACGGTA...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp GTCTCTTTCCGCTATGCGCCTATAGAACAGAACCAAGTCAACTTTATAAATGACTACCGTGTCCCATTATaGTGGACAGAAAACACGCAG +
Preference number: 4 (lower is better)
Translates to: VSFRYAPIEQNQVNFINDYRVPL*WTENTQ
Trigger: CTGCGTGTTTTCTGTCCACCATAATGGGACACGGTA...GTCATTTATAAAGTTGACTTGGTTCTGTTCTATAGGCGCATAGCGGAAAGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTTTCTCTATCAGTGAATaGATCTCCTCGACAACAGCT +
Preference number: 4 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLFSISE*ISSTTA
Trigger: AGCTGTTGTCGAGGAGATCCATTCACTGATAGAGAA...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp TACATCTATTTTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGTTTGTTTCTTTTGGTaGCATTTAAGGTCCAATTGC +
Preference number: 4 (lower is better)
Translates to: YIYFGDKGLPKGPQPTGWVCFFW*HLRSNC
Trigger: GCAATTGGACCTTAAATGTCACCAAAAGAAACAAAC...CCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAAAATAGATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp CTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCCCAACCATCGTCTTTATTCAATaGAGCACTGCAGTTCAACTC +
Preference number: 4 (lower is better)
Translates to: LMLQPFNTVLHTVVKPPTIVFIQ*STAVQL
Trigger: GAGTTGAACTGCAGTGCTTCATTGAATAAAGACGAT...GGTTGGGGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAAATCGTCTTTATTCAATaGAGCACTGCAGTTCAACTC +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQIVFIQ*STAVQL
Trigger: GAGTTGAACTGCAGTGCTTCATTGAATAAAGACGAT...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTATCGTCTTTATTCAATaGAGCACTGCAGTTCAACTC +
Preference number: 4 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLIVFIQ*STAVQL
Trigger: GAGTTGAACTGCAGTGCTTCATTGAATAAAGACGAT...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp GAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCTGTTTTCTCACAAATTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGAT +
Preference number: 4 (lower is better)
Translates to: ETVHRHETSEETHLFSHKLHIRV*AVLFPD
Trigger: ATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAA...TTTGTGAGAAAACAGATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp GGCCAGCGGTTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACAAATCTCAGTATTTTTaGAGCATGCAGTTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: GQRFSTFLMLQPFNTVLHKSQYF*SMQFAF
Trigger: GAAGGCAAACTGCATGCTTCAAAAATACTGAGATTT...GTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAACCGCTGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR TCA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACAAATCTCAGTATTTTTaGAGCATGCAGTTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHKSQYF*SMQFAF
Trigger: GAAGGCAAACTGCATGCTTCAAAAATACTGAGATTT...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR GCA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCGCACTGGTGCAGATATaGCACATGGCTTCAGATAAA +
Preference number: 4 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFALVQI*HMASDK
Trigger: TTTATCTGAAGCCATGTGGCATATCTGCACCAGTGC...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp TCAAATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAAGCACTGGTGCAGATATaGCACATGGCTTCAGATAAA +
Preference number: 4 (lower is better)
Translates to: SNKRKTSVSFLCWVQAQKALVQI*HMASDK
Trigger: TTTATCTGAAGCCATGTGGCATATCTGCACCAGTGC...TTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTATTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAATTGAAGCATGCAGTTTaGCTTCAGAAATCCATGTTG +
Preference number: 4 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQLKHAV*LQKSML
Trigger: CAACATGGATTTCTGAAGGCAAACTGCATGCTTCAA...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp CTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCCCAACCTGCAGATATGCCACATaGCTTCAGATAAAAAGGTTC +
Preference number: 4 (lower is better)
Translates to: LMLQPFNTVLHTVVKPPTCRYAT*LQIKRF
Trigger: GAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA...GGTTGGGGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp ACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCTGCAGATATGCCACATaGCTTCAGATAAAAAGGTTC +
Preference number: 4 (lower is better)
Translates to: TRRVRRQFTDMRHQKKHICRYAT*LQIKRF
Trigger: GAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA...GATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp GTGTCTCGTCTCTTTCCGCTATGCGCCTATAGAACAGAACCAAGTCAACTTTATTGCAGATATGCCACATaGCTTCAGATAAAAAGGTTC +
Preference number: 4 (lower is better)
Translates to: VSRLFPLCAYRTEPSQLYCRYAT*LQIKRF
Trigger: GAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA...ATAAAGTTGACTTGGTTCTGTTCTATAGGCGCATAGCGGAAAGAGACGAGACAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTAGAACCTTGAGTTCATaGAGGGACTGTCAGCCCTCC +
Preference number: 4 (lower is better)
Translates to: YKINFMCRSLADRRTKRSRTLSS*RDCQPS
Trigger: GGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCT...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR CAA 72 bp AGTTGGATAAAATTCCAGAGCTCACAAAATCCAAGATaGTCCATCAAATTTGGCTGCACATACCACACCGTC +
Preference number: 4 (lower is better)
Translates to: SWIKFQSSQNPR*SIKFGCTYHTV
Trigger: GACGGTGTGGTATGTGCAGCCAAATTTGATGGACAATCTTGGATTTTGTGAGCTCTGGAATTTTATCCAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR TCA 90 bp CACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACATGTTTGTTTCTTTTGGTaGCATTTAAGGTCCAATTGC +
Preference number: 4 (lower is better)
Translates to: HKTCEETVHRHETSEETHVCFFW*HLRSNC
Trigger: GCAATTGGACCTTAAATGTCACCAAAAGAAACAAAC...ATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp ACTCCAGGCTGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAAAATCTCAGTATTTTTaGAGCATGCAGTTTGCCTTC +
Preference number: 4 (lower is better)
Translates to: TPGWERGSEIISGIIQIKKSQYF*SMQFAF
Trigger: GAAGGCAAACTGCATGCTTCAAAAATACTGAGATTT...TTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCAGCCTGGAGT
41% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR GCA 90 bp ATATCGCAGGTTCCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGGCACTGGTGCAGATATaGCACATGGCTTCAGATAAA +
Preference number: 4 (lower is better)
Translates to: ISQVPFQRMYEKVEETRKALVQI*HMASDK
Trigger: TTTATCTGAAGCCATGTGGCATATCTGCACCAGTGC...CTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGGAACCTGCGATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR GCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTTGGCTTGACGGCTTTTaGGGGCATCAGGTAAACAAG +
Preference number: 4 (lower is better)
Translates to: YKINFMCRSLADRRTKRSWLDGF*GHQVNK
Trigger: CTTGTTTACCTGATGCCCGCAAAAGCCGTCAAGCCA...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTTTCTTTCCATCCTCCATCTCAACTaGCCAGAATTCCAAGGTGTG +
Preference number: 4 (lower is better)
Translates to: SEIISGIIQIKGRPVFLSILHLN*PEFQGV
Trigger: CACACCTTGGAATTCTGGCCAGTTGAGATGGAGGAT...GGAAAGAAACACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR TCA 90 bp ACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCGTTTGTTTCTTTTGGTaGCATTTAAGGTCCAATTGC +
Preference number: 4 (lower is better)
Translates to: TFLMLQPFNTVLHTVVKPVCFFW*HLRSNC
Trigger: GCAATTGGACCTTAAATGTCACCAAAAGAAACAAAC...GGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTATTCCTGTGCACTGGTaGAGATATGCCACATGGCTT +
Preference number: 4 (lower is better)
Translates to: YKINFMCRSLADRRTKRSIPVHW*RYATWL
Trigger: AAGCCATGTGGCATATCTGCACCAGTGCACAGGAAT...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR GCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTGCTGTTTCATTCCTGTaGACTGGTGCAGATATGCCA +
Preference number: 4 (lower is better)
Translates to: YKINFMCRSLADRRTKRSAVSFL*TGADMP
Trigger: TGGCATATCTGCACCAGTGCACAGGAATGAAACAGC...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCGGATCCTTGGGGTTTTaGATATTTCCTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFGSLGF*IFPYSS
Trigger: AGAACTGTAAGGAAATATCCAAAACCCCAAGGATCC...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CCA 90 bp TCAAATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAAGGATCCTTGGGGTTTTaGATATTTCCTTACAGTTCT +
Preference number: 4 (lower is better)
Translates to: SNKRKTSVSFLCWVQAQKGSLGF*IFPYSS
Trigger: AGAACTGTAAGGAAATATCCAAAACCCCAAGGATCC...TTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTATTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp TATAAAATAAACTTCATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTTACCGTGTCCCATTATaGTGGACAGAAAACACGCAG +
Preference number: 4 (lower is better)
Translates to: YKINFMCRSLADRRTKRSYRVPL*WTENTQ
Trigger: CTGCGTGTTTTCTGTCCACCATAATGGGACACGGTA...ACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACATGAAGTTTATTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
3UTR CAA 72 bp AGGGCACCAGAATTGGCTCATAAAAACAGCAAGCATTaGTTGATTGTTTGCTACAGTTTAGCAGCTAGTATG +
Preference number: 4 (lower is better)
Translates to: RAPELAHKNSKH*LIVCYSLAASM
Trigger: CATACTAGCTGCTAAACTGTAGCAAACAATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR TCA 90 bp GAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCTGTTTTCTCACAAAATCGTCTTTATTCAATaGAGCACTGCAGTTCAACTC +
Preference number: 4 (lower is better)
Translates to: ETVHRHETSEETHLFSHKIVFIQ*STAVQL
Trigger: GAGTTGAACTGCAGTGCTTCATTGAATAAAGACGAT...TTTGTGAGAAAACAGATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CCA 90 bp ATATCGCAGGTTCCATTTCAAAGGATGTACGAAAAGGTTGAAGAAACAAGGAAGTGCAGATATGCCACATaGCTTCAGATAAAAAGGTTC +
Preference number: 4 (lower is better)
Translates to: ISQVPFQRMYEKVEETRKCRYAT*LQIKRF
Trigger: GAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA...CTTCCTTGTTTCTTCAACCTTTTCGTACATCCTTTGAAATGGAACCTGCGATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
3UTR CAA 72 bp GCACCAGAATTGGCTCATAAAAACAGCAAGCATTTGTaGATTGTTTGCTACAGTTTAGCAGCTAGTATGATC +
Preference number: 4 (lower is better)
Translates to: APELAHKNSKHL*IVCYSLAASMI
Trigger: GATCATACTAGCTGCTAAACTGTAGCAAACAATCAACAAATGCTTGCTGTTTTTATGAGCCAATTCTGGTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR TCA 90 bp TCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTTTCTTTCCATCGTCTTTATTCAATaGAGCACTGCAGTTCAACTC +
Preference number: 4 (lower is better)
Translates to: SEIISGIIQIKGRPVFLSIVFIQ*STAVQL
Trigger: GAGTTGAACTGCAGTGCTTCATTGAATAAAGACGAT...GGAAAGAAACACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR GCA 90 bp TCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTTTCTTTCCTTGAAGCATGCAGTTTaGCTTCAGAAATCCATGTTG +
Preference number: 4 (lower is better)
Translates to: SEIISGIIQIKGRPVFLSLKHAV*LQKSML
Trigger: CAACATGGATTTCTGAAGGCAAACTGCATGCTTCAA...GGAAAGAAACACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
3UTR CAA 72 bp TATGTATGTATGTTTATGTGTGTATGCTTATGTATATaGTGTTTCTTCTACTGCTATGTTTCTCCTCTGCCC +
Preference number: 4 (lower is better)
Translates to: YVCMFMCVCLCI*CFFYCYVSPLP
Trigger: GGGCAGAGGAGAAACATAGCAGTAGAAGAAACACAATATACATAAGCATACACACATAAACATACATACATA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS TCA 90 bp GTGCTGAGAGAACAGACCGCGCCTCCGACTCCTCTCTCCATGGCTTaGCGGCTTTTGCGGGCATCAGGTAAACAAGATTCTTCCAGAACC +
Preference number: 5 (lower is better)
Translates to: VLREQTAPPTPLSMA*RLLRASGKQDSSRT
Trigger: GGTTCTGGAAGAATCTTGTTTACCTGATGCCCGCAAAAGCCGTCAAGCCATGGAGAGAGGAGTCGGAGGCGCGGTCTGTTCTCTCAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CCA 90 bp TGGCTGAGAACGATGATTAGCCTCCGGCTTTTCTCTATCAGTGAATaGATCTCCTCGACAACAGCTCCGCCAGGCACCACATCTCTTTCA +
Preference number: 5 (lower is better)
Translates to: WLRTMISLRLFSISE*ISSTTAPPGTTSLS
Trigger: TGAAAGAGATGTGGTGCCTGGCGGAGCTGTTGTCGAGGAGATCCATTCACTGATAGAGAAAAGCCGGAGGCTAATCATCGTTCTCAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp CACACCAAAACTGCCTGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCCTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: HTKTACMPRAPELAHKNSLLVTS*SEKQLC
Trigger: ACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAG...GCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCAGGCAGTTTTGGTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS-3UTR CAA 90 bp TTGGAGATAAAGGTTTGCCAAAGGGGCCACAACCCACAGGTTGGGAATCACTGCCTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: LEIKVCQRGHNPQVGNHCLLVTS*SEKQLC
Trigger: ACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAG...GCAGTGATTCCCAACCTGTGGGTTGTGGCCCCTTTGGCAAACCTTTATCTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp CACTTGCAAGGTCACAAGAAGCTTTGGGCTTCTAGCTCTAGGCCAGCGGTTCTCGATTCTTCCAGAACCTaGAGTTCATGGAGGGACTGT +
Preference number: 5 (lower is better)
Translates to: HLQGHKKLWASSSRPAVLDSSRT*SSWRDC
Trigger: ACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATC...GAGAACCGCTGGCCTAGAGCTAGAAGCCCAAAGCTTCTTGTGACCTTGCAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp CACTCAGGCACTTGCAAGGTCACAAGAAGCTTTGGGCTTCTAGCTCTAGGCCAGCATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCT +
Preference number: 5 (lower is better)
Translates to: HSGTCKVTRSFGLLALGQHPSGS*GFWIFP
Trigger: AGGAAATATCCAAAACCCCAAGGATCCTGAAGGATG...CTGGCCTAGAGCTAGAAGCCCAAAGCTTCTTGTGACCTTGCAAGTGCCTGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195684.6
CDS CCA 90 bp GCCACAGAGGCGAGAACAAGCACAGTTACTCCTCCTGTAAAGACATaGCCTGGGATATCAGGTATTTCTTTTCTCACCAAGACGAAGCTC +
Preference number: 5 (lower is better)
Translates to: ATEARTSTVTPPVKT*PGISGISFLTKTKL
Trigger: GAGCTTCGTCTTGGTGAGAAAAGAAATACCTGATATCCCAGGCCATGTCTTTACAGGAGGAGTAACTGTGCTTGTTCTCGCCTCTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp TGTAAACACACTCGGACTAACAGCACAAGACGTGTGAGGAGACAGTTCACAGACTGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCT +
Preference number: 5 (lower is better)
Translates to: CKHTRTNSTRRVRRQFTDCEALP*NHLMVA
Trigger: AGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACA...GTCTGTGAACTGTCTCCTCACACGTCTTGTGCTGTTAGTCCGAGTGTGTTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp AAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGCTGGGCGAGCTTCTGTaGTTCAGCTCTCTATACTCA +
Preference number: 5 (lower is better)
Translates to: KTSVSFLCWVQAQKHELGLGELL*FSSLYS
Trigger: TGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAG...CCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp CACACCAAAACTGCCTGCATGCCCAGGGCACCAGAATTGGCTCATAAAAACAGCCATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCT +
Preference number: 5 (lower is better)
Translates to: HTKTACMPRAPELAHKNSHPSGS*GFWIFP
Trigger: AGGAAATATCCAAAACCCCAAGGATCCTGAAGGATG...GCTGTTTTTATGAGCCAATTCTGGTGCCCTGGGCATGCAGGCAGTTTTGGTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS TCA 90 bp CCTCCATCTCAACTGGCCAGAATTCCAAGGTGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGTTGTTCAGCTCTCTATACTCATGTG +
Preference number: 5 (lower is better)
Translates to: PPSQLARIPRCDHEK*LWASFCCSALYTHV
Trigger: CACATGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACACCTTGGAATTCTGGCCAGTTGAGATGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS GCA 90 bp GCCTTTGAACCATCTCATGGTGGCTGTTTCATTCCTGTGCACTGGTaGAGATATGCCACATGGCTTCAGATAAAAAGGTTCTCCCTCTAC +
Preference number: 5 (lower is better)
Translates to: AFEPSHGGCFIPVHW*RYATWLQIKRFSLY
Trigger: GTAGAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGTGCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 90 bp ACTGCCTTTGAACCATCTCATGGTGGCTGTTTCATTCCTGTGCACTaGTGCAGATATGCCACATGGCTTCAGATAAAAAGGTTCTCCCTC +
Preference number: 5 (lower is better)
Translates to: TAFEPSHGGCFIPVH*CRYATWLQIKRFSL
Trigger: GAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGTGCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp GGCCAGCGGTTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACTGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCT +
Preference number: 5 (lower is better)
Translates to: GQRFSTFLMLQPFNTVLHCEALP*NHLMVA
Trigger: AGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACA...GTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAACCGCTGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp AGCACAAGACGTGTGAGGAGACAGTTCACAGACATGAGACATCAGAAGAAACACTGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCT +
Preference number: 5 (lower is better)
Translates to: STRRVRRQFTDMRHQKKHCEALP*NHLMVA
Trigger: AGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACA...GTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTCCTCACACGTCTTGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGATGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCKHTRTNSTRCEALP*NHLMVA
Trigger: AGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACA...TCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTCTGGGCGAGCTTCTGTaGTTCAGCTCTCTATACTCA +
Preference number: 5 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSLGELL*FSSLYS
Trigger: TGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAG...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp ACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCACTTGCCTGGGCGAGCTTCTGTaGTTCAGCTCTCTATACTCA +
Preference number: 5 (lower is better)
Translates to: TVSALDFPRIFLLHSGTCLGELL*FSSLYS
Trigger: TGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAG...GCAAGTGCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTCTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSLLVTS*SEKQLC
Trigger: ACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAG...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CCA 90 bp GGAGTAGTAGCCCTCATCTCCAAACTCGGCATCCTTCAGGATCCTTaGGGTTTTGGATATTTCCTTACAGTTCTTATACAGCCATGTGTC +
Preference number: 5 (lower is better)
Translates to: GVVALISKLGILQDP*GFGYFLTVLIQPCV
Trigger: GACACATGGCTGTATAAGAACTGTAAGGAAATATCCAAAACCCCAAGGATCCTGAAGGATGCCGAGTTTGGAGATGAGGGCTACTACTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 90 bp AGAGGCGAGAACAAGCACAGTTACTCCTCCTGTAAAGACATGGCCTaGGATATCAGGTATTTCTTTTCTCACCAAGACGAAGCTCTTGGT +
Preference number: 5 (lower is better)
Translates to: RGENKHSYSSCKDMA*DIRYFFSHQDEALG
Trigger: ACCAAGAGCTTCGTCTTGGTGAGAAAAGAAATACCTGATATCCCAGGCCATGTCTTTACAGGAGGAGTAACTGTGCTTGTTCTCGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS CCA 90 bp TTGCGGGCATCAGGTAAACAAGATTCTTCCAGAACCTTGAGTTCATaGAGGGACTGTCAGCCCTCCATTTTAGAACTCTGTAGGACTTCA +
Preference number: 5 (lower is better)
Translates to: LRASGKQDSSRTLSS*RDCQPSILELCRTS
Trigger: TGAAGTCCTACAGAGTTCTAAAATGGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATCTTGTTTACCTGATGCCCGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp CTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGAAACCCCCAACCTGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCT +
Preference number: 5 (lower is better)
Translates to: LMLQPFNTVLHTVVKPPTCEALP*NHLMVA
Trigger: AGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACA...GGTTGGGGGTTTCACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTGGGCGAGCTTCTGTaGTTCAGCTCTCTATACTCA +
Preference number: 5 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQLGELL*FSSLYS
Trigger: TGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAG...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp GAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGCTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: ERGSEIISGIIQIKGRPVLLVTS*SEKQLC
Trigger: ACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAG...CACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGACATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCKHTRTNSTRHPSGS*GFWIFP
Trigger: AGGAAATATCCAAAACCCCAAGGATCCTGAAGGATG...TCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp ATGTGTCGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAAGATTCTTCCAGAACCTaGAGTTCATGGAGGGACTGT +
Preference number: 5 (lower is better)
Translates to: MCRSLADRRTKRSLKLSQDSSRT*SSWRDC
Trigger: ACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATC...TTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCGACACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS TCA 90 bp AATCCATGTTGTCGTCTCCTTCCTGTCTTCTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGATGCTCCAATAAAACAGATCGTCTTT +
Preference number: 5 (lower is better)
Translates to: NPCCRLLPVFLHIRV*AVLFPDAPIKQIVF
Trigger: AAAGACGATCTGTTTTATTGGAGCATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGAGACGACAACATGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp CGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTTTCTGGGCGAGCTTCTGTaGTTCAGCTCTCTATACTCA +
Preference number: 5 (lower is better)
Translates to: RGSEIISGIIQIKGRPVFLGELL*FSSLYS
Trigger: TGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAG...AAACACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp TCAAATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: SNKRKTSVSFLCWVQAQKLLVTS*SEKQLC
Trigger: ACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAG...TTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTATTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTCATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCT +
Preference number: 5 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLHPSGS*GFWIFP
Trigger: AGGAAATATCCAAAACCCCAAGGATCCTGAAGGATG...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp ACTCCAGGCTGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAACATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCT +
Preference number: 5 (lower is better)
Translates to: TPGWERGSEIISGIIQIKHPSGS*GFWIFP
Trigger: AGGAAATATCCAAAACCCCAAGGATCCTGAAGGATG...TTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCAGCCTGGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp AAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCTAGGGGAAATCTCAGTATTTTaGAAGCATGCAGTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: KTSVSFLCWVQAQKHELGEISVF*KHAVCL
Trigger: AAGGCAAACTGCATGCTTCAAAAATACTGAGATTTC...CCCTAGCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR CAA 90 bp TTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACACTGTGGTGGATTCTTCCAGAACCTaGAGTTCATGGAGGGACTGT +
Preference number: 5 (lower is better)
Translates to: FSTFLMLQPFNTVLHTVVDSSRT*SSWRDC
Trigger: ACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATC...CACCACAGTGTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp TCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGACCAGTGTTTCTTTCCCTGGGCGAGCTTCTGTaGTTCAGCTCTCTATACTCA +
Preference number: 5 (lower is better)
Translates to: SEIISGIIQIKGRPVFLSLGELL*FSSLYS
Trigger: TGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAG...GGAAAGAAACACTGGTCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp GGCCAGCGGTTCTCAACCTTCCTAATGCTTCAACCCTTTAATACAGTTCTTCACGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTT +
Preference number: 5 (lower is better)
Translates to: GQRFSTFLMLQPFNTVLHEKQLC*FLLVTF
Trigger: AAATGTCACCAAAAGAAACAAACACAGCTGTTTCTC...GTGAAGAACTGTATTAAAGGGTTGAAGCATTAGGAAGGTTGAGAACCGCTGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTAAACACACTCGGACTAACAGCACAAGAGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVCKHTRTNSTREKQLC*FLLVTF
Trigger: AAATGTCACCAAAAGAAACAAACACAGCTGTTTCTC...TCTTGTGCTGTTAGTCCGAGTGTGTTTACACACACACACACACACACACACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp CGAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTT +
Preference number: 5 (lower is better)
Translates to: RSLADRRTKRSLKLSQLSEKQLC*FLLVTF
Trigger: AAATGTCACCAAAAGAAACAAACACAGCTGTTTCTC...AGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp TCAAATAAAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCT +
Preference number: 5 (lower is better)
Translates to: SNKRKTSVSFLCWVQAQKHPSGS*GFWIFP
Trigger: AGGAAATATCCAAAACCCCAAGGATCCTGAAGGATG...TTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTTTATTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp AAAGGAAGACCAGTGTTTCTTTCCTTTGCTGGGTGCAGGCACAAAAACATGAGCGAAATCTCAGTATTTTaGAAGCATGCAGTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: KGRPVFLSFAGCRHKNMSEISVF*KHAVCL
Trigger: AAGGCAAACTGCATGCTTCAAAAATACTGAGATTTC...GCTCATGTTTTTGTGCCTGCACCCAGCAAAGGAAAGAAACACTGGTCTTCCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
CDS-3UTR CAA 90 bp TTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCTTGCTTCACTCAGGCGAAATCTCAGTATTTTaGAAGCATGCAGTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: FSTVSALDFPRIFLLHSGEISVF*KHAVCL
Trigger: AAGGCAAACTGCATGCTTCAAAAATACTGAGATTTC...GCCTGAGTGAAGCAAGAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp GGCTGGGAACGAGGCTCAGAGATCATTAGTGGGATCATTCAAATAAAAGGAAGAGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTT +
Preference number: 5 (lower is better)
Translates to: GWERGSEIISGIIQIKGREKQLC*FLLVTF
Trigger: AAATGTCACCAAAAGAAACAAACACAGCTGTTTCTC...TCTTCCTTTTATTTGAATGATCCCACTAATGATCTCTGAGCCTCGTTCCCAGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS-3UTR CAA 90 bp GAAGCTTGGCTGATAGAAGAACAAAGCGAAGTCTCAAACTCTCCCAACTCTCTTGAAATCTCAGTATTTTaGAAGCATGCAGTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: EAWLIEEQSEVSNSPNSLEISVF*KHAVCL
Trigger: AAGGCAAACTGCATGCTTCAAAAATACTGAGATTTC...AAGAGAGTTGGGAGAGTTTGAGACTTCGCTTTGTTCTTCTATCAGCCAAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp AACAAAAGTATCTTCCAGTGCCGAGAGATGCATATTTCAGCAGGAGGTGTTGTGGAAATCTCAGTATTTTaGAAGCATGCAGTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: NKSIFQCREMHISAGGVVEISVF*KHAVCL
Trigger: AAGGCAAACTGCATGCTTCAAAAATACTGAGATTTC...CACAACACCTCCTGCTGAAATATGCATCTCTCGGCACTGGAAGATACTTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108044.4
CDS CCA 90 bp TTTCAAATATGCATAACTTATACCCAAACTGTTTCTCCAGGACCCTaGGTAACGTCTCCACAGCAAAAGTATACTCTTCTTTATTCTCAG +
Preference number: 5 (lower is better)
Translates to: FQICITYTQTVSPGP*VTSPQQKYTLLYSQ
Trigger: CTGAGAATAAAGAAGAGTATACTTTTGCTGTGGAGACGTTACCCAGGGTCCTGGAGAAACAGTTTGGGTATAAGTTATGCATATTTGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp AATCTACTGTGTTTGTTCAGCACAGTCTCTGCTCTAGACTTCCCTAGAATATTCGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTT +
Preference number: 5 (lower is better)
Translates to: NLLCLFSTVSALDFPRIFEKQLC*FLLVTF
Trigger: AAATGTCACCAAAAGAAACAAACACAGCTGTTTCTC...GAATATTCTAGGGAAGTCTAGAGCAGAGACTGTGCTGAACAAACACAGTAGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS-3UTR CAA 90 bp GAGACAGTTCACAGACATGAGACATCAGAAGAAACACATCTGTTTTCTCACAAAGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTT +
Preference number: 5 (lower is better)
Translates to: ETVHRHETSEETHLFSHKEKQLC*FLLVTF
Trigger: AAATGTCACCAAAAGAAACAAACACAGCTGTTTCTC...TTTGTGAGAAAACAGATGTGTTTCTTCTGATGTCTCATGTCTGTGAACTGTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
CDS GCA 72 bp CGCCTCCGACTCCTCTCTCCATGGCTTGACGGCTTTTaGGGGCATCAGGTAAACAAGATTCTTCCAGAACCT +
Preference number: 6 (lower is better)
Translates to: RLRLLSPWLDGF*GHQVNKILPEP
Trigger: AGGTTCTGGAAGAATCTTGTTTACCTGATGCCCGCAAAAGCCGTCAAGCCATGGAGAGAGGAGTCGGAGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CCA 72 bp ACGATGATTAGCCTCCGGCTTTTCTCTATCAGTGAATaGATCTCCTCGACAACAGCTCCGCCAGGCACCACA +
Preference number: 6 (lower is better)
Translates to: TMISLRLFSISE*ISSTTAPPGTT
Trigger: TGTGGTGCCTGGCGGAGCTGTTGTCGAGGAGATCCATTCACTGATAGAGAAAAGCCGGAGGCTAATCATCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CCA 72 bp AAGATGATCTTAATCTTCCTCTCTACCAGTGCTTCGTaGAGTCCACTCTCGAGCTCACGCCTGGCTCCGTTA +
Preference number: 6 (lower is better)
Translates to: KMILIFLSTSAS*SPLSSSRLAPL
Trigger: TAACGGAGCCAGGCGTGAGCTCGAGAGTGGACTCCACGAAGCACTGGTAGAGAGGAAGATTAAGATCATCTT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS TCA 72 bp GGGCGAGCTTCTGTTGTTCAGCTCTCTATACTCATGTaGAGCACTGCCTTTGAACCATCTCATGGTGGCTGT +
Preference number: 6 (lower is better)
Translates to: GRASVVQLSILM*STAFEPSHGGC
Trigger: ACAGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACATGAGTATAGAGAGCTGAACAACAGAAGCTCGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 90 bp GAGCTTCTGTTGTTCAGCTCTCTATACTCATGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCTGTTTCATTCCTGTGCACTGGTGCA +
Preference number: 6 (lower is better)
Translates to: ELLLFSSLYSCEALP*NHLMVAVSFLCTGA
Trigger: TGCACCAGTGCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACATGAGTATAGAGAGCTGAACAACAGAAGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS TCA 72 bp CAACTGGCCAGAATTCCAAGGTGTGATCATGAAAAGTaGCTCTGGGCGAGCTTCTGTTGTTCAGCTCTCTAT +
Preference number: 6 (lower is better)
Translates to: QLARIPRCDHEK*LWASFCCSALY
Trigger: ATAGAGAGCTGAACAACAGAAGCTCGCCCAGAGTCACTTTTCATGATCACACCTTGGAATTCTGGCCAGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS TCA 72 bp TGTCGTCTCCTTCCTGTCTTCTTGCACATTAGGGTCTaGGCTGTCCTCTTTCCTGATGCTCCAATAAAACAG +
Preference number: 6 (lower is better)
Translates to: CRLLPVFLHIRV*AVLFPDAPIKQ
Trigger: CTGTTTTATTGGAGCATCAGGAAAGAGGACAGCTCAGACCCTAATGTGCAAGAAGACAGGAAGGAGACGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS GCA 72 bp TGGTGGCTGTTTCATTCCTGTGCACTGGTGCAGATATaGCACATGGCTTCAGATAAAAAGGTTCTCCCTCTA +
Preference number: 6 (lower is better)
Translates to: WWLFHSCALVQI*HMASDKKVLPL
Trigger: TAGAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGTGCACAGGAATGAAACAGCCACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS GCA 72 bp CCATCTCATGGTGGCTGTTTCATTCCTGTGCACTGGTaGAGATATGCCACATGGCTTCAGATAAAAAGGTTC +
Preference number: 6 (lower is better)
Translates to: PSHGGCFIPVHW*RYATWLQIKRF
Trigger: GAACCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGTGCACAGGAATGAAACAGCCACCATGAGATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp GAACCATCTCATGGTGGCTGTTTCATTCCTGTGCACTaGTGCAGATATGCCACATGGCTTCAGATAAAAAGG +
Preference number: 6 (lower is better)
Translates to: EPSHGGCFIPVH*CRYATWLQIKR
Trigger: CCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGTGCACAGGAATGAAACAGCCACCATGAGATGGTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 72 bp TTGCGGGCATCAGGTAAACAAGATTCTTCCAGAACCTaGAGTTCATGGAGGGACTGTCAGCCCTCCATTTTA +
Preference number: 6 (lower is better)
Translates to: LRASGKQDSSRT*SSWRDCQPSIL
Trigger: TAAAATGGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATCTTGTTTACCTGATGCCCGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CAA 90 bp AGGAGTAGTAGCCCTCATCTCCAAACTCGGCATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCTTACAGTTCTTATACAGCCATGTGT +
Preference number: 6 (lower is better)
Translates to: RSSSPHLQTRHPSGS*GFWIFPYSSYTAMC
Trigger: ACACATGGCTGTATAAGAACTGTAAGGAAATATCCAAAACCCCAAGGATCCTGAAGGATGCCGAGTTTGGAGATGAGGGCTACTACTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS TCA 72 bp TGTTCAGCTCTCTATACTCATGTGAAGCACTGCCTTTaGACCATCTCATGGTGGCTGTTTCATTCCTGTGCA +
Preference number: 6 (lower is better)
Translates to: CSALYTHVKHCL*TISWWLFHSCA
Trigger: TGCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACATGAGTATAGAGAGCTGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp TGTTTCATTCCTGTGCACTGGTGCAGATATGCCACATaGCTTCAGATAAAAAGGTTCTCCCTCTACCACATG +
Preference number: 6 (lower is better)
Translates to: CFIPVHWCRYAT*LQIKRFSLYHM
Trigger: CATGTGGTAGAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCACCAGTGCACAGGAATGAAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp GCCCTCATCTCCAAACTCGGCATCCTTCAGGATCCTTaGGGTTTTGGATATTTCCTTACAGTTCTTATACAG +
Preference number: 6 (lower is better)
Translates to: ALISKLGILQDP*GFGYFLTVLIQ
Trigger: CTGTATAAGAACTGTAAGGAAATATCCAAAACCCCAAGGATCCTGAAGGATGCCGAGTTTGGAGATGAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp GCGAGAACAAGCACAGTTACTCCTCCTGTAAAGACATaGCCTGGGATATCAGGTATTTCTTTTCTCACCAAG +
Preference number: 6 (lower is better)
Translates to: ARTSTVTPPVKT*PGISGISFLTK
Trigger: CTTGGTGAGAAAAGAAATACCTGATATCCCAGGCCATGTCTTTACAGGAGGAGTAACTGTGCTTGTTCTCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS CAA 72 bp TTGTTCAGCTCTCTATACTCATGTGAAGCACTGCCTTaGAACCATCTCATGGTGGCTGTTTCATTCCTGTGC +
Preference number: 6 (lower is better)
Translates to: LFSSLYSCEALP*NHLMVAVSFLC
Trigger: GCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGTGCTTCACATGAGTATAGAGAGCTGAACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 72 bp ATATCAGGTATTTCTTTTCTCACCAAGACGAAGCTCTaGGTGTCTATGGCTTCTTCGTTGGCCACGGTGCAA +
Preference number: 6 (lower is better)
Translates to: ISGISFLTKTKL*VSMASSLATVQ
Trigger: TTGCACCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCTTCGTCTTGGTGAGAAAAGAAATACCTGATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS CAA 90 bp TGGCCTGGGATATCAGGTATTTCTTTTCTCACCAAGACGAAGCTCTaGGTGTCTATGGCTTCTTCGTTGGCCACGGTGCAATTATATAAA +
Preference number: 6 (lower is better)
Translates to: WPGISGISFLTKTKL*VSMASSLATVQLYK
Trigger: TTTATATAATTGCACCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCTTCGTCTTGGTGAGAAAAGAAATACCTGATATCCCAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS CCA 72 bp TTGAGAAATGTACGTTCCCTCATCCTCCATCTCAACTaGCCAGAATTCCAAGGTGTGATCATGAAAAGTGAC +
Preference number: 6 (lower is better)
Translates to: LRNVRSLILHLN*PEFQGVIMKSD
Trigger: GTCACTTTTCATGATCACACCTTGGAATTCTGGCCAGTTGAGATGGAGGATGAGGGAACGTACATTTCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp TCAGGTAAACAAGATTCTTCCAGAACCTTGAGTTCATaGAGGGACTGTCAGCCCTCCATTTTAGAACTCTGT +
Preference number: 6 (lower is better)
Translates to: SGKQDSSRTLSS*RDCQPSILELC
Trigger: ACAGAGTTCTAAAATGGAGGGCTGACAGTCCCTCCATGAACTCAAGGTTCTGGAAGAATCTTGTTTACCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CAA 72 bp AGCCCTCATCTCCAAACTCGGCATCCTTCAGGATCCTaGGGGTTTTGGATATTTCCTTACAGTTCTTATACA +
Preference number: 6 (lower is better)
Translates to: SPHLQTRHPSGS*GFWIFPYSSYT
Trigger: TGTATAAGAACTGTAAGGAAATATCCAAAACCCCAAGGATCCTGAAGGATGCCGAGTTTGGAGATGAGGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS TCA 72 bp ACATTTAAGGTCCAATTGCGACGATCATTTCCGACTTaGGAAATGTACGTTCCCTCATCCTCCATCTCAACT +
Preference number: 6 (lower is better)
Translates to: TFKVQLRRSFPT*EMYVPSSSIST
Trigger: AGTTGAGATGGAGGATGAGGGAACGTACATTTCTCAAGTCGGAAATGATCGTCGCAATTGGACCTTAAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp AACAAGCACAGTTACTCCTCCTGTAAAGACATGGCCTaGGATATCAGGTATTTCTTTTCTCACCAAGACGAA +
Preference number: 6 (lower is better)
Translates to: NKHSYSSCKDMA*DIRYFFSHQDE
Trigger: TTCGTCTTGGTGAGAAAAGAAATACCTGATATCCCAGGCCATGTCTTTACAGGAGGAGTAACTGTGCTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS CCA 72 bp TGCATAACTTATACCCAAACTGTTTCTCCAGGACCCTaGGTAACGTCTCCACAGCAAAAGTATACTCTTCTT +
Preference number: 6 (lower is better)
Translates to: CITYTQTVSPGP*VTSPQQKYTLL
Trigger: AAGAAGAGTATACTTTTGCTGTGGAGACGTTACCCAGGGTCCTGGAGAAACAGTTTGGGTATAAGTTATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CAA 72 bp CTGCTTGTCACGAGCTTGTCAGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTTAAGGTCCAATTGCGA +
Preference number: 6 (lower is better)
Translates to: LLVTSLSEKQLC*FLLVTFKVQLR
Trigger: TCGCAATTGGACCTTAAATGTCACCAAAAGAAACAAACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CCA 72 bp TTTCTTTTCTCACCAAGACGAAGCTCTTGGTGTCTATaGCTTCTTCGTTGGCCACGGTGCAATTATATAAAA +
Preference number: 6 (lower is better)
Translates to: FLFSPRRSSWCL*LLRWPRCNYIK
Trigger: TTTTATATAATTGCACCGTGGCCAACGAAGAAGCCATAGACACCAAGAGCTTCGTCTTGGTGAGAAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000195684.6
CDS CAA 90 bp TCAACATCTCTGCTTGTCACGAGCTTGTCAGAGAAACAGCTGTGTTaGTTTCTTTTGGTGACATTTAAGGTCCAATTGCGACGATCATTT +
Preference number: 6 (lower is better)
Translates to: STSLLVTSLSEKQLC*FLLVTFKVQLRRSF
Trigger: AAATGATCGTCGCAATTGGACCTTAAATGTCACCAAAAGAAACAAACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAGAGATGTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 90 bp GGAGTTACTTTACTCCTTCCTTCAATAACTGTTATATTGACAGTCTaGGTGATGTTGTACCGTGTCCCATTATGGTGGACAGAAAACACG +
Preference number: 6 (lower is better)
Translates to: GVTLLLPSITVILTV*VMLYRVPLWWTENT
Trigger: CGTGTTTTCTGTCCACCATAATGGGACACGGTACAACATCACCAAGACTGTCAATATAACAGTTATTGAAGGAAGGAGTAAAGTAACTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 72 bp GATTTGTTAACTTCAACATCTCTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGTTTGTTTCTTTTGGTG +
Preference number: 6 (lower is better)
Translates to: DLLTSTSLLVTS*SEKQLCLFLLV
Trigger: CACCAAAAGAAACAAACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAGAGATGTTGAAGTTAACAAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 90 bp AAAATAGCTGGAGTTACTTTACTCCTTCCTTCAATAACTGTTATATaGACAGTCTTGGTGATGTTGTACCGTGTCCCATTATGGTGGACA +
Preference number: 6 (lower is better)
Translates to: KIAGVTLLLPSITVI*TVLVMLYRVPLWWT
Trigger: TGTCCACCATAATGGGACACGGTACAACATCACCAAGACTGTCAATATAACAGTTATTGAAGGAAGGAGTAAAGTAACTCCAGCTATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS GCA 72 bp TTTTACCATCTGTTAGTGTCTCGTCTCTTTCCGCTATaGGCCTATAGAACAGAACCAAGTCAACTTTATAAA +
Preference number: 6 (lower is better)
Translates to: FYHLLVSRLFPL*AYRTEPSQLYK
Trigger: TTTATAAAGTTGACTTGGTTCTGTTCTATAGGCGCATAGCGGAAAGAGACGAGACACTAACAGATGGTAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000195684.6
CDS CAA 72 bp GGAGTTACTTTACTCCTTCCTTCAATAACTGTTATATaGACAGTCTTGGTGATGTTGTACCGTGTCCCATTA +
Preference number: 6 (lower is better)
Translates to: GVTLLLPSITVI*TVLVMLYRVPL
Trigger: TAATGGGACACGGTACAACATCACCAAGACTGTCAATATAACAGTTATTGAAGGAAGGAGTAAAGTAACTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6
CDS CAA 90 bp ATATGCAGAGATTTGTTAACTTCAACATCTCTGCTTGTCACGAGCTaGTCAGAGAAACAGCTGTGTTTGTTTCTTTTGGTGACATTTAAG +
Preference number: 6 (lower is better)
Translates to: ICRDLLTSTSLLVTS*SEKQLCLFLLVTFK
Trigger: CTTAAATGTCACCAAAAGAAACAAACACAGCTGTTTCTCTGACAAGCTCGTGACAAGCAGAGATGTTGAAGTTAACAAATCTCTGCATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000087983.8
ENSMUST00000108044.4
ENSMUST00000167723.8
ENSMUST00000193391.6
ENSMUST00000193793.6
ENSMUST00000195684.6