Pregenerated sensors for IL18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039217Ensembl transcript IDs: ENSMUST00000059081.13, ENSMUST00000180021.2, ENSMUST00000213916.2, ENSMUST00000214117.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCATCATCTTCCTTTTGGCAAGCAAGAAAGTGTCCTTCATACAGTaGAGATTCAAACTCCATCTTGTTGTGTCCTGGAACACGTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: SIIFLLASKKVSFIQ*RFKLHLVVSWNTFL Trigger: CAGAAACGTGTTCCAGGACACAACAAGATGGAGTTTGAATCTTCACTGTATGAAGGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213916.2 |
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| 3UTR-3UTR CAA 90 bp | TTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGAGCATCATCTTCCTTTaGGCAAGCAAGAAAGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: LLYKSCSLGYSVMEIQARSIIFL*ASKKVS Trigger: GGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCT...CCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213916.2 |
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| 3UTR TCA 72 bp | TTCCTTTTGGCAAGCAAGAAAGTGTCCTTCATACAGTaGAGATTCAAACTCCATCTTGTTGTGTCCTGGAAC | + |
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Preference number: 3 (lower is better) Translates to: FLLASKKVSFIQ*RFKLHLVVSWN Trigger: GTTCCAGGACACAACAAGATGGAGTTTGAATCTTCACTGTATGAAGGACACTTTCTTGCTTGCCAAAAGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213916.2 |
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| 3UTR CCA 72 bp | TTTTTCAGAATGAGTTTGAAAGCATCATCTTCCTTTTaGCAAGCAAGAAAGTGTCCTTCATACAGTGAAGAT | + |
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Preference number: 3 (lower is better) Translates to: FFRMSLKASSSF*QARKCPSYSED Trigger: ATCTTCACTGTATGAAGGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCTTTCAAACTCATTCTGAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000213916.2 |
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| CDS-3UTR TCA 90 bp | AAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAATCGGCCAAAGTTGTCTaGTTCCAGGTCTCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: KSCSLGYSVMEIQARSSQSAKVV*FQVSSL Trigger: GAGGCTGGAGACCTGGAATCAGACAACTTTGGCCGA...TTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059081.13 |
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| CDS-3UTR TCA 90 bp | TCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: SCSLGYSVMEIQARSSQGSAKVV*FQVSIF Trigger: GAAAATGGAGACCTGGAATCAGACAACTTTGGCCGA...GCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | CAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGGTGTCCTTCATACAGTaGAGATTCAAACTCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: QPRVFCYGNTGEVITRRMVSFIQ*RFKLHL Trigger: AAGATGGAGTTTGAATCTTCACTGTATGAAGGACAC...CATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | CGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGCTGCATCATCTTCCTTTTaGCAAGCAAGAAAGTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RVFCYGNTGEVITRRMCAASSSF*QARKCP Trigger: AGGACACTTTCTTGCTTGCCAAAAGGAAGATGATGC...AGCACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | CGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGCTCCTGGAACACGTTTCTaGAAGAATATGAGATCACTT | + |
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Preference number: 4 (lower is better) Translates to: RVFCYGNTGEVITRRMCAPGTRF*KNMRSL Trigger: AAGTGATCTCATATTCTTTCAGAAACGTGTTCCAGG...AGCACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | ATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: INHAASGILLWKYRRGHHSAKVV*FQVSIF Trigger: GAAAATGGAGACCTGGAATCAGACAACTTTGGCCGA...GTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR GCA 90 bp | CCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTTATATTCCGTATTACTaGGGTTGTACAGTGAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: PRVFCYGNTGEVITRRMCYIPYY*GCTVKS Trigger: CGACTTCACTGTACAACCGCAGTAATACGGAATATA...ACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | ATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGGCATCATCTTCCTTTTaGCAAGCAAGAAAGTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: IMQPRVFCYGNTGEVITRASSSF*QARKCP Trigger: AGGACACTTTCTTGCTTGCCAAAAGGAAGATGATGC...CCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | ATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCCTGGAACACGTTTCTaGAAGAATATGAGATCACTT | + |
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Preference number: 4 (lower is better) Translates to: IMQPRVFCYGNTGEVITRPGTRF*KNMRSL Trigger: AAGTGATCTCATATTCTTTCAGAAACGTGTTCCAGG...CCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR GCA 90 bp | ATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGTATATTCCGTATTACTaGGGTTGTACAGTGAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: IMQPRVFCYGNTGEVITRYIPYY*GCTVKS Trigger: CGACTTCACTGTACAACCGCAGTAATACGGAATATA...CCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | GTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGCTAATTGGTCTGGGGTTCACTaGCACTTTGATCAATATCAG | + |
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Preference number: 4 (lower is better) Translates to: VFCYGNTGEVITRRMCANWSGVH*HFDQYQ Trigger: CTGATATTGATCAAAGTGCCAGTGAACCCCAGACCA...ATTAGCACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | TGTTTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: CLLYKSCSLGYSVMEIQASAKVV*FQVSIF Trigger: GAAAATGGAGACCTGGAATCAGACAACTTTGGCCGA...CGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | TCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATTGGTCTGGGGTTCACTaGCACTTTGATCAATATCAG | + |
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Preference number: 4 (lower is better) Translates to: SINHAASGILLWKYRRGHWSGVH*HFDQYQ Trigger: CTGATATTGATCAAAGTGCCAGTGAACCCCAGACCA...ATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | CGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGCTATCAATATTTTCAGGTaGATCCATTTCCTCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: RVFCYGNTGEVITRRMCAINIFR*IHFLKG Trigger: TCCTTTGAGGAAATGGATCCACCTGAAAATATTGAT...AGCACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR GCA 90 bp | CTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATATATTCCGTATTACTaGGGTTGTACAGTGAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: LYKSCSLGYSVMEIQARSYIPYY*GCTVKS Trigger: CGACTTCACTGTACAACCGCAGTAATACGGAATATA...TGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | CGTGTTTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGTGGTCTGGGGTTCACTaGCACTTTGATCAATATCAG | + |
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Preference number: 4 (lower is better) Translates to: RVYSINHAASGILLWKYRWSGVH*HFDQYQ Trigger: CTGATATTGATCAAAGTGCCAGTGAACCCCAGACCA...CCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAAACACG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | TATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACCTGGAACACGTTTCTaGAAGAATATGAGATCACTT | + |
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Preference number: 4 (lower is better) Translates to: YKSCSLGYSVMEIQARSSPGTRF*KNMRSL Trigger: AAGTGATCTCATATTCTTTCAGAAACGTGTTCCAGG...TGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR GCA 90 bp | TATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCATATATTCCGTATTACTaGGGTTGTACAGTGAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: YKSCSLGYSVMEIQARSSYIPYY*GCTVKS Trigger: CGACTTCACTGTACAACCGCAGTAATACGGAATATA...TGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CCA 90 bp | TGTTTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGGCATCATCTTCCTTTTaGCAAGCAAGAAAGTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: CLLYKSCSLGYSVMEIQAASSSF*QARKCP Trigger: AGGACACTTTCTTGCTTGCCAAAAGGAAGATGATGC...CGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR TCA 90 bp | CGTGTTTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGGATCCATTTCCACTTTaGTCAATATCAGTCATATCC | + |
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Preference number: 4 (lower is better) Translates to: RVYSINHAASGILLWKYRDPFPL*SISVIS Trigger: GGATATGACTGATATTGATCAAAGTGGAAATGGATC...CCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAAACACG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000213916.2 |
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| CDS-3UTR CCA 90 bp | CGTGTTTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGATCAATATTTTCAGGTaGATCCATTTCCTCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: RVYSINHAASGILLWKYRINIFR*IHFLKG Trigger: TCCTTTGAGGAAATGGATCCACCTGAAAATATTGAT...CCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAAACACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCAGCATCATCTTCCTTTaGGCAAGCAAGAAAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: MQPRVFCYGNTGEVITRRSIIFL*ASKKVS Trigger: GGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCT...GCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 90 bp | ATTCCGTATTACTGCGGTTGTACAGTGAAGTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCAGCCTCCTGCCGTATAAAGTAAAGCGTGTT | + |
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Preference number: 5 (lower is better) Translates to: IPYYCGCTVKSAKVV*FQVSSLLPYKVKRV Trigger: AACACGCTTTACTTTATACGGCAGGAGGCTGGAGACCTGGAATCAGACAACTTTGGCCGACTTCACTGTACAACCGCAGTAATACGGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059081.13 |
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| CDS-3UTR CAA 90 bp | CTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGTCAAACTCCATCTTGTaGTGTCCTGGAACACGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LGYSVMEIQARSSQGACVSNSIL*CPGTRF Trigger: GAAACGTGTTCCAGGACACAACAAGATGGAGTTTGA...CACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | CTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGAGCATCATCTTCCTTTaGGCAAGCAAGAAAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: LGYSVMEIQARSSQGACVSIIFL*ASKKVS Trigger: GGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCT...CACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | ATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGTCAAACTCCATCTTGTaGTGTCCTGGAACACGTTTC | + |
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Preference number: 5 (lower is better) Translates to: IMQPRVFCYGNTGEVITRSNSIL*CPGTRF Trigger: GAAACGTGTTCCAGGACACAACAAGATGGAGTTTGA...CCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | GTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGCTAATAACACAGGCTGTCTTTaGTCAACGAAGAGAACTTGG | + |
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Preference number: 5 (lower is better) Translates to: VFCYGNTGEVITRRMCANNTGCL*STKRTW Trigger: CCAAGTTCTCTTCGTTGACAAAAGACAGCCTGTGTT...ATTAGCACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS CCA 90 bp | CACTGTCTTTGTACATGTATATTATCAGTCTGGTCTGGGGTTCACTaGCACTTTGATCAATATCAGTCATATCCTCGAACACAGGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: HCLCTCILSVWSGVH*HFDQYQSYPRTQAV Trigger: GACAGCCTGTGTTCGAGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATACATGTACAAAGACAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | TCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATAACACAGGCTGTCTTTaGTCAACGAAGAGAACTTGG | + |
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Preference number: 5 (lower is better) Translates to: SINHAASGILLWKYRRGHNTGCL*STKRTW Trigger: CCAAGTTCTCTTCGTTGACAAAAGACAGCCTGTGTT...ATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | TACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTAACACAGGCTGTCTTTaGTCAACGAAGAGAACTTGG | + |
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Preference number: 5 (lower is better) Translates to: YSINHAASGILLWKYRRGNTGCL*STKRTW Trigger: CCAAGTTCTCTTCGTTGACAAAAGACAGCCTGTGTT...ACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | GTATTCTGTTATGGAAATACAGGCGAGGTCATCACAAGGCGCATGTGTGCTAATGGGTTCACTGGCACTTaGATCAATATCAGTCATATC | + |
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Preference number: 5 (lower is better) Translates to: VFCYGNTGEVITRRMCANGFTGT*INISHI Trigger: GATATGACTGATATTGATCAAAGTGCCAGTGAACCC...ATTAGCACACATGCGCCTTGTGATGACCTCGCCTGTATTTCCATAACAGAATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | TCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGTCATAGCATCATCTTCCTTTaGGCAAGCAAGAAAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SINHAASGILLWKYRRGHSIIFL*ASKKVS Trigger: GGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCT...ATGACCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 90 bp | ATTCCGTATTACTGCGGTTGTACAGTGAAGTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCATTTTCTTCAGGTATAAAGTAAAGCGTGTT | + |
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Preference number: 5 (lower is better) Translates to: IPYYCGCTVKSAKVV*FQVSIFFRYKVKRV Trigger: AACACGCTTTACTTTATACCTGAAGAAAATGGAGACCTGGAATCAGACAACTTTGGCCGACTTCACTGTACAACCGCAGTAATACGGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | TTACTCTATAAATCATGCAGCCTCGGGTATTCTGTTATGGAAATACAGGCGAGGGGGTTCACTGGCACTTaGATCAATATCAGTCATATC | + |
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Preference number: 5 (lower is better) Translates to: LLYKSCSLGYSVMEIQARGFTGT*INISHI Trigger: GATATGACTGATATTGATCAAAGTGCCAGTGAACCC...CCTCGCCTGTATTTCCATAACAGAATACCCGAGGCTGCATGATTTATAGAGTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 90 bp | TTGTACATGTATATTATCAGTCTGGTCTGGGGTTCACTGGCACTTTaGTCAATATCAGTCATATCCTCGAACACAGGCTGTCTTTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: LYMYIISLVWGSLAL*SISVISSNTGCLLS Trigger: TGACAAAAGACAGCCTGTGTTCGAGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATACATGTACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS CCA 90 bp | CCAGTCCTCTTACTTCACTGTCTTTGTACATGTATATTATCAGTCTaGTCTGGGGTTCACTGGCACTTTGATCAATATCAGTCATATCCT | + |
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Preference number: 5 (lower is better) Translates to: PVLLLHCLCTCILSV*SGVHWHFDQYQSYP Trigger: AGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATACATGTACAAAGACAGTGAAGTAAGAGGACTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS-3UTR CAA 90 bp | CAGAATGAGTTTGAAAGCATCATCTTCCTTTTGGCAAGCAAGAAAGTGTCCTTCGGATCCATTTCCACTTaGATCAATATCAGTCATATC | + |
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Preference number: 5 (lower is better) Translates to: QNEFESIIFLLASKKVSFGSIST*INISHI Trigger: GATATGACTGATATTGATCAAAGTGGAAATGGATCC...GAAGGACACTTTCTTGCTTGCCAAAAGGAAGATGATGCTTTCAAACTCATTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213916.2 |
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| CDS TCA 90 bp | CAAACTCCATCTTGTTGTGTCCTGGAACACGTTTCTGAAAGAATATaGGATCACTTTGTATATCATCAATATTTTCAGGTGGATCCATTT | + |
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Preference number: 5 (lower is better) Translates to: QTPSCCVLEHVSERI*DHFVYHQYFQVDPF Trigger: AAATGGATCCACCTGAAAATATTGATGATATACAAAGTGATCTCATATTCTTTCAGAAACGTGTTCCAGGACACAACAAGATGGAGTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 72 bp | TACTGCGGTTGTACAGTGAAGTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCAGCCTCCTGCCGTATAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: YCGCTVKSAKVV*FQVSSLLPYKV Trigger: TACTTTATACGGCAGGAGGCTGGAGACCTGGAATCAGACAACTTTGGCCGACTTCACTGTACAACCGCAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059081.13 |
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| CDS CAA 90 bp | TCCTTCACAGAGAGGGTCACAGCCAGTCCTCTTACTTCACTGTCTTaGTACATGTATATTATCAGTCTGGTCTGGGGTTCACTGGCACTT | + |
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Preference number: 6 (lower is better) Translates to: SFTERVTASPLTSLS*YMYIISLVWGSLAL Trigger: AAGTGCCAGTGAACCCCAGACCAGACTGATAATATACATGTACAAAGACAGTGAAGTAAGAGGACTGGCTGTGACCCTCTCTGTGAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS CAA 72 bp | GAGAGGGTCACAGCCAGTCCTCTTACTTCACTGTCTTaGTACATGTATATTATCAGTCTGGTCTGGGGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ERVTASPLTSLS*YMYIISLVWGS Trigger: TGAACCCCAGACCAGACTGATAATATACATGTACAAAGACAGTGAAGTAAGAGGACTGGCTGTGACCCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 72 bp | TGGTCATTTATATTCCGTATTACTGCGGTTGTACAGTaGAGTCGGCCAAAGTTGTCTGATTCCAGGTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: WSFIFRITAVVQ*SRPKLSDSRSP Trigger: TGGAGACCTGGAATCAGACAACTTTGGCCGACTTCACTGTACAACCGCAGTAATACGGAATATAAATGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS CAA 72 bp | GTATATTATCAGTCTGGTCTGGGGTTCACTGGCACTTaGATCAATATCAGTCATATCCTCGAACACAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: VYYQSGLGFTGT*INISHILEHRL Trigger: CAGCCTGTGTTCGAGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 72 bp | TATATTATCAGTCTGGTCTGGGGTTCACTGGCACTTTaGTCAATATCAGTCATATCCTCGAACACAGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: YIISLVWGSLAL*SISVISSNTGC Trigger: ACAGCCTGTGTTCGAGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS TCA 72 bp | TACTGCGGTTGTACAGTGAAGTCGGCCAAAGTTGTCTaGTTCCAGGTCTCCATTTTCTTCAGGTATAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: YCGCTVKSAKVV*FQVSIFFRYKV Trigger: TACTTTATACCTGAAGAAAATGGAGACCTGGAATCAGACAACTTTGGCCGACTTCACTGTACAACCGCAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS CAA 90 bp | TTTGTACATGTATATTATCAGTCTGGTCTGGGGTTCACTGGCACTTaGATCAATATCAGTCATATCCTCGAACACAGGCTGTCTTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: FVHVYYQSGLGFTGT*INISHILEHRLSFV Trigger: GACAAAAGACAGCCTGTGTTCGAGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATACATGTACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS CCA 72 bp | TGTACATGTATATTATCAGTCTGGTCTGGGGTTCACTaGCACTTTGATCAATATCAGTCATATCCTCGAACA | + |
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Preference number: 6 (lower is better) Translates to: CTCILSVWSGVH*HFDQYQSYPRT Trigger: TGTTCGAGGATATGACTGATATTGATCAAAGTGCCAGTGAACCCCAGACCAGACTGATAATATACATGTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS CAA 72 bp | TCAATATCAGTCATATCCTCGAACACAGGCTGTCTTTaGTCAACGAAGAGAACTTGGTCATTTATATTCCGT | + |
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Preference number: 6 (lower is better) Translates to: SISVISSNTGCL*STKRTWSFIFR Trigger: ACGGAATATAAATGACCAAGTTCTCTTCGTTGACAAAAGACAGCCTGTGTTCGAGGATATGACTGATATTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000213916.2 ENSMUST00000214117.2 |
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| CDS CAA 72 bp | TTTTCAGGTGGATCCATTTCCTCAAAGGAAATGATCTaGTTCTTACAGGAGAGGGTAGACATTTTACTATCC | + |
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Preference number: 6 (lower is better) Translates to: FSGGSISSKEMI*FLQERVDILLS Trigger: GGATAGTAAAATGTCTACCCTCTCCTGTAAGAACAAGATCATTTCCTTTGAGGAAATGGATCCACCTGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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| CDS CAA 90 bp | TCATCAATATTTTCAGGTGGATCCATTTCCTCAAAGGAAATGATCTaGTTCTTACAGGAGAGGGTAGACATTTTACTATCCTTCACAGAG | + |
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Preference number: 6 (lower is better) Translates to: SSIFSGGSISSKEMI*FLQERVDILLSFTE Trigger: CTCTGTGAAGGATAGTAAAATGTCTACCCTCTCCTGTAAGAACAAGATCATTTCCTTTGAGGAAATGGATCCACCTGAAAATATTGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059081.13 ENSMUST00000180021.2 ENSMUST00000214117.2 |
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