RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL17RD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040717

Ensembl transcript IDs: ENSMUST00000035336.5, ENSMUST00000223942.2, ENSMUST00000225146.2, ENSMUST00000226105.2

Found 458 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCGCGTGGGATAGCTGCCGCTCAGCAGGTAGGCAGGTGCTGGCCTTaGAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAG +
Preference number: 1 (lower is better)
Translates to: ARGIAAAQQVGRCWP*RRHQTQAPAAHLQE
Trigger: CTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCCAGCACCTGCCTACCTGCTGAGCGGCAGCTATCCCACGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 90 bp TGCCCTCCAGTTTCCTCATCTGAGTTCATGCATCGAGCCTGGGCCTaGGATCCAGTGAAGCTAAGCCCTCCTCCACCCAGGGCCCCATGC +
Preference number: 1 (lower is better)
Translates to: CPPVSSSEFMHRAWA*DPVKLSPPPPRAPC
Trigger: GCATGGGGCCCTGGGTGGAGGAGGGCTTAGCTTCACTGGATCCCAGGCCCAGGCTCGATGCATGAACTCAGATGAGGAAACTGGAGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp GAGTGCTGTCTCTTCTTGGATAGGAAAGCCACGGCACATCAGTACTaGGCCTGGGAGCTGGAGGGAGTTAGGGGTGAGCCCACAGTCCTC +
Preference number: 1 (lower is better)
Translates to: ECCLFLDRKATAHQY*AWELEGVRGEPTVL
Trigger: GAGGACTGTGGGCTCACCCCTAACTCCCTCCAGCTCCCAGGCTCAGTACTGATGTGCCGTGGCTTTCCTATCCAAGAAGAGACAGCACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CCA 90 bp TCTTGGATAGGAAAGCCACGGCACATCAGTACTGAGCCTGGGAGCTaGAGGGAGTTAGGGGTGAGCCCACAGTCCTCTCCAGAGCACACA +
Preference number: 1 (lower is better)
Translates to: SWIGKPRHISTEPGS*RELGVSPQSSPEHT
Trigger: TGTGTGCTCTGGAGAGGACTGTGGGCTCACCCCTAACTCCCTCCAGCTCCCAGGCTCAGTACTGATGTGCCGTGGCTTTCCTATCCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 90 bp GAAAACCAAGAAGCCCAGGAAACACTGCTGAAGGCTGGACAAGGGTaGCTTGGTTTGCCCCAGTCGGTGCCACGCCCTGATGTCTCTCTT +
Preference number: 1 (lower is better)
Translates to: ENQEAQETLLKAGQG*LGLPQSVPRPDVSL
Trigger: AAGAGAGACATCAGGGCGTGGCACCGACTGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTCCTGGGCTTCTTGGTTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp TTTCATTCCAGATATCCCCGTGTGCGCCTTCAGCTCCAAGTAGGCTaGACAACCACAGAGGTGAACTGGGGAGCCAGAGAGATCAGCAGC +
Preference number: 1 (lower is better)
Translates to: FHSRYPRVRLQLQVG*TTTEVNWGAREISS
Trigger: GCTGCTGATCTCTCTGGCTCCCCAGTTCACCTCTGTGGTTGTGCAGCCTACTTGGAGCTGAAGGCGCACACGGGGATATCTGGAATGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR GCA 90 bp CTGTTCTCTGCTAGAGAACATGTGGAGCACGCTCTCCTGAGAAGCTaGCAGCTGCCTGTGCAGAGCAGGGAGAAGGGTGTTTCCATCCAA +
Preference number: 1 (lower is better)
Translates to: LFSAREHVEHALLRS*QLPVQSREKGVSIQ
Trigger: TTGGATGGAAACACCCTTCTCCCTGCTCTGCACAGGCAGCTGGCAGCTTCTCAGGAGAGCGTGCTCCACATGTTCTCTAGCAGAGAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp AGGCAGGTGCTGGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTaGTCACCTGCAGGAGAGAATAAAGCACAAGACAAGGACTGCCAC +
Preference number: 1 (lower is better)
Translates to: RQVLALKKTPDTSPS*SPAGENKAQDKDCH
Trigger: GTGGCAGTCCTTGTCTTGTGCTTTATTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCCAGCACCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 90 bp CCGCTTCCAGCTGGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTaGAAATGTGGTGATATGACAAGGGCCAAACACTGTGGGGATACC +
Preference number: 1 (lower is better)
Translates to: PLPAGSPLANFPPWV*KCGDMTRAKHCGDT
Trigger: GGTATCCCCACAGTGTTTGGCCCTTGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp TGTCCACCCCACCACCTACAAAAGACCCGCACTCCACACTGTCACTaGGACATAATTCCAGGGCCAGGCAAAGCCCAGGAAAGCAGAAAG +
Preference number: 1 (lower is better)
Translates to: CPPHHLQKTRTPHCH*DIIPGPGKAQESRK
Trigger: CTTTCTGCTTTCCTGGGCTTTGCCTGGCCCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGGGGTGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 90 bp CCAGCTGCCTGTGCAGAGCAGGGAGAAGGGTGTTTCCATCCAAAATaGACACAAACCGCTTCTTCTCAGCAGGAACTAAGGGCTCCCTTC +
Preference number: 1 (lower is better)
Translates to: PAACAEQGEGCFHPK*TQTASSQQELRAPF
Trigger: GAAGGGAGCCCTTAGTTCCTGCTGAGAAGAAGCGGTTTGTGTGCATTTTGGATGGAAACACCCTTCTCCCTGCTCTGCACAGGCAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 90 bp CTGATGCTTCAGTGTAACCAGAGAGGTGCGTTTACCAGTACTTTCTaGGTGTGTGACGGGCTCAGCTGCCTCCCATTCTCGACCACCTTG +
Preference number: 1 (lower is better)
Translates to: LMLQCNQRGAFTSTF*VCDGLSCLPFSTTL
Trigger: CAAGGTGGTCGAGAATGGGAGGCAGCTGAGCCCGTCACACACCCAGAAAGTACTGGTAAACGCACCTCTCTGGTTACACTGAAGCATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 90 bp GAGGAGGAGGGAGAGGTATCTGGGGTCCCCAGTGAGTATCAAGGGTaGACCAAGAGGCAGGAAAGAAGACTACTGGCTGAAATTCTCCAG +
Preference number: 1 (lower is better)
Translates to: EEEGEVSGVPSEYQG*TKRQERRLLAEILQ
Trigger: CTGGAGAATTTCAGCCAGTAGTCTTCTTTCCTGCCTCTTGGTTCACCCTTGATACTCACTGGGGACCCCAGATACCTCTCCCTCCTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp GCCCCATGCTGCTCCTGGGCACTCTCAGGGACCCCACACTCCACATaGAAAGCTCAGTATCTATCCGAAATGTGGTTTCTAATGGCTCTT +
Preference number: 1 (lower is better)
Translates to: APCCSWALSGTPHST*KAQYLSEMWFLMAL
Trigger: AAGAGCCATTAGAAACCACATTTCGGATAGATACTGAGCTTTGCATGTGGAGTGTGGGGTCCCTGAGAGTGCCCAGGAGCAGCATGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp TCTGCAAGGAAGACATACAAAGGACCATCTGATCAGCAGGGAGGTTaGAGAATCCCCTCGGCTAAAGAGCCAGAATCTCAGCCACAGCCG +
Preference number: 1 (lower is better)
Translates to: SARKTYKGPSDQQGG*RIPSAKEPESQPQP
Trigger: CGGCTGTGGCTGAGATTCTGGCTCTTTAGCCGAGGGGATTCTGCAACCTCCCTGCTGATCAGATGGTCCTTTGTATGTCTTCCTTGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp TGGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTGGAAATGTGGTaGTATGACAAGGGCCAAACACTGTGGGGATACCTGGTGTCTCAA +
Preference number: 1 (lower is better)
Translates to: WLSFGQLSPLGLEMW*YDKGQTLWGYLVSQ
Trigger: TTGAGACACCAGGTATCCCCACAGTGTTTGGCCCTTGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp AGGGAGTTAGGGGTGAGCCCACAGTCCTCTCCAGAGCACACAAGCTaGTGCTTCAGTGTAACCAGAGAGGTGCGTTTACCAGTACTTTCT +
Preference number: 1 (lower is better)
Translates to: RELGVSPQSSPEHTS*CFSVTREVRLPVLS
Trigger: AGAAAGTACTGGTAAACGCACCTCTCTGGTTACACTGAAGCATCAGCTTGTGTGCTCTGGAGAGGACTGTGGGCTCACCCCTAACTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 90 bp CCAGCCAAAATACAAACCACGATTCTAATAATGTTGCTGCCCAGCTaGGTAATGGATAGCAGTCCTCCACGTCCAGCCGTCACCACCCGA +
Preference number: 1 (lower is better)
Translates to: PAKIQTTILIMLLPS*VMDSSPPRPAVTTR
Trigger: TCGGGTGGTGACGGCTGGACGTGGAGGACTGCTATCCATTACTCAGCTGGGCAGCAACATTATTAGAATCGTGGTTTGTATTTTGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR GCA 90 bp GCTCTACTCCCAAAAGGTATCCTTCTATCTGCATGTGCCTGCACGTaGCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAA +
Preference number: 1 (lower is better)
Translates to: ALLPKGILLSACACT*HTQPLFPCVYTHRK
Trigger: TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGCACATGCAGATAGAAGGATACCTTTTGGGAGTAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR TCA 90 bp CTCCTTTGGCCAACTTTCCCCCTTGGGTCTGGAAATGTGGTGATATaGCAAGGGCCAAACACTGTGGGGATACCTGGTGTCTCAACAATA +
Preference number: 1 (lower is better)
Translates to: LLWPTFPLGSGNVVI*QGPNTVGIPGVSTI
Trigger: TATTGTTGAGACACCAGGTATCCCCACAGTGTTTGGCCCTTGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp GGTGGCCCTTGGCAACCTCTGGCCTCACCTTGCCAGAGGTTCTGGTaGAGTGTGTGCCATTTAAACAATATGATTCACAAAATACAGGGC +
Preference number: 1 (lower is better)
Translates to: GGPWQPLASPCQRFW*SVCHLNNMIHKIQG
Trigger: GCCCTGTATTTTGTGAATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGTGAGGCCAGAGGTTGCCAAGGGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp GGTGATCGCTTCTGTCTGGCTCTTGATTGCATCAAACATTATGCCTaGTTAACTGAGAGATCCAGCCCTAGAGGAGGAGGGAGAGGTATC +
Preference number: 1 (lower is better)
Translates to: GDRFCLALDCIKHYA*LTERSSPRGGGRGI
Trigger: GATACCTCTCCCTCCTCCTCTAGGGCTGGATCTCTCAGTTAAGCAGGCATAATGTTTGATGCAATCAAGAGCCAGACAGAAGCGATCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp AGTGTTTTGCCTGCGTGTATGTCTATACACCACTGGTATGCCTGCTaGCCTCAGAGGTCAGAAGGAGTAATCGGATCCCTTGGCATTAGA +
Preference number: 1 (lower is better)
Translates to: SVLPACMSIHHWYAC*PQRSEGVIGSLGIR
Trigger: TCTAATGCCAAGGGATCCGATTACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGGCAAAACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 90 bp ATGTATGAGTGTTTTGCCTGCGTGTATGTCTATACACCACTGGTATaGCTGCTGCCCTCAGAGGTCAGAAGGAGTAATCGGATCCCTTGG +
Preference number: 1 (lower is better)
Translates to: MYECFACVYVYTPLV*LLPSEVRRSNRIPW
Trigger: CCAAGGGATCCGATTACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGGCAAAACACTCATACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 90 bp AGGGCCTCAGATCCCATTATAGATGGTTGTGAACCACCATGTGGTTaGTGGGAATTAAACTCAGGGCCTCTAGAACAGTCAGTCAGCACT +
Preference number: 1 (lower is better)
Translates to: RASDPIIDGCEPPCG*WELNSGPLEQSVST
Trigger: AGTGCTGACTGACTGTTCTAGAGGCCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTCACAACCATCTATAATGGGATCTGAGGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 90 bp ATATGGGACGATAGAGATCTGACTTTGAAATTAACAGCAGCAGAATaGTGGCGGTGGCAGTGGAGGCAGCGCACATCTTTAATCCCAGCA +
Preference number: 1 (lower is better)
Translates to: IWDDRDLTLKLTAAE*WRWQWRQRTSLIPA
Trigger: TGCTGGGATTAAAGATGTGCGCTGCCTCCACTGCCACCGCCATCATTCTGCTGCTGTTAATTTCAAAGTCAGATCTCTATCGTCCCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp GACCTCAAGTTGACAGCAATTCTCCTGCTTTTCTCTCCTGAATATTaGGATCACAGGCATGTGCTACCATGTCTAGCAAGTACCCCCTAC +
Preference number: 1 (lower is better)
Translates to: DLKLTAILLLFSPEY*DHRHVLPCLASTPY
Trigger: GTAGGGGGTACTTGCTAGACATGGTAGCACATGCCTGTGATCGCAATATTCAGGAGAGAAAAGCAGGAGAATTGCTGTCAACTTGAGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CCA 90 bp TTTATATGTATGAGTGTTTTGCCTGCGTGTATGTCTATACACCACTaGTATGCCTGCTGCCCTCAGAGGTCAGAAGGAGTAATCGGATCC +
Preference number: 1 (lower is better)
Translates to: FICMSVLPACMSIHH*YACCPQRSEGVIGS
Trigger: GGATCCGATTACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGGCAAAACACTCATACATATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 90 bp TGTGGGTACGTTGTCTGGGTTTGTTTCAGAAATGCTTGTACTTTCTaGGCTGTCTTGCCAGCGCTAGGCATTGACAGCTTCAAAATGAGA +
Preference number: 1 (lower is better)
Translates to: CGYVVWVCFRNACTF*AVLPALGIDSFKMR
Trigger: TCTCATTTTGAAGCTGTCAATGCCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAGACAACGTACCCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp GGTGGTGTTCTGATTGAGCATATGCACCATGATATTTTTATGTGGTaGGAGCAGCCAGCCCACACAAATCTCCCTGTAATCCTAACTGGA +
Preference number: 1 (lower is better)
Translates to: GGVLIEHMHHDIFMW*EQPAHTNLPVILTG
Trigger: TCCAGTTAGGATTACAGGGAGATTTGTGTGGGCTGGCTGCTCTCACCACATAAAAATATCATGGTGCATATGCTCAATCAGAACACCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 90 bp TGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTTAGAAGGCTaGAGCAGAACAGATCGAGTGCTAGCCAGAATTTCATTCCAGATA +
Preference number: 1 (lower is better)
Translates to: CFWETGDFAKYPLEG*SRTDRVLARISFQI
Trigger: TATCTGGAATGAAATTCTGGCTAGCACTCGATCTGTTCTGCTCCAGCCTTCTAAGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CCA 90 bp GTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGAAAGCTaGTTTGAATTTCTGCAAGGAAGACATACAAAGGACCATCTGATC +
Preference number: 1 (lower is better)
Translates to: VTSCSFSSMLQTKES*FEFLQGRHTKDHLI
Trigger: GATCAGATGGTCCTTTGTATGTCTTCCTTGCAGAAATTCAAACCAGCTTTCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp GCTAAGAAACCATCACCTGGCACGTTAGAATCTGGCTCTCTCTTCTaGTCAAAAACACTTGTATGTCAAAATAAAGTCACCCAATGGCTA +
Preference number: 1 (lower is better)
Translates to: AKKPSPGTLESGSLF*SKTLVCQNKVTQWL
Trigger: TAGCCATTGGGTGACTTTATTTTGACATACAAGTGTTTTTGATCAGAAGAGAGAGCCAGATTCTAACGTGCCAGGTGATGGTTTCTTAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 90 bp ACCTGGCAGCCACTGGGCAAAATTAGATCTATCTACATGTTCTATTaGTCCTGGGTTCATTTAAGTAGTTTCCAAAGCTTAATTGCTAAT +
Preference number: 1 (lower is better)
Translates to: TWQPLGKIRSIYMFY*SWVHLSSFQSLIAN
Trigger: ATTAGCAATTAAGCTTTGGAAACTACTTAAATGAACCCAGGACCAATAGAACATGTAGATAGATCTAATTTTGCCCAGTGGCTGCCAGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 90 bp TCAAATATACCACAATATACCAGCAATATCGCCAATGTAAAAATATaGCACAGTGCTATAGGCTGTCAGTGCTTACCATTCTGCCAAAAG +
Preference number: 1 (lower is better)
Translates to: SNIPQYTSNIANVKI*HSAIGCQCLPFCQK
Trigger: CTTTTGGCAGAATGGTAAGCACTGACAGCCTATAGCACTGTGCCATATTTTTACATTGGCGATATTGCTGGTATATTGTGGTATATTTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 90 bp TTTGAACAGAAGTTTTTGCTTCTGTTCAAACTTGATATGCTTCTTTaGGAGAAAGATGGATTTAACACACACACACACACACACACACAC +
Preference number: 1 (lower is better)
Translates to: FEQKFLLLFKLDMLL*EKDGFNTHTHTHTH
Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTTAAATCCATCTTTCTCTCAAAGAAGCATATCAAGTTTGAACAGAAGCAAAAACTTCTGTTCAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 90 bp CACTTGAGTTTGAACAGAAGTTTTTGCTTCTGTTCAAACTTGATATaGTTCTTTGAGAGAAAGATGGATTTAACACACACACACACACAC +
Preference number: 1 (lower is better)
Translates to: HLSLNRSFCFCSNLI*FFERKMDLTHTHTH
Trigger: GTGTGTGTGTGTGTGTGTTAAATCCATCTTTCTCTCAAAGAAGCATATCAAGTTTGAACAGAAGCAAAAACTTCTGTTCAAACTCAAGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CAA 90 bp GAAGCCCAGGAAACACTGCTGAAGGCTGGACAAGGGTGCCTTGGTTaGCCCCAGTCGGTGCCACGCCCTGATGTCTCTCTTCAAGGTGCT +
Preference number: 2 (lower is better)
Translates to: EAQETLLKAGQGCLG*PQSVPRPDVSLQGA
Trigger: AGCACCTTGAAGAGAGACATCAGGGCGTGGCACCGACTGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTCCTGGGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR TCA 90 bp CCAGTTTCCTCATCTGAGTTCATGCATCGAGCCTGGGCCTGGGATCCAGTGAAGTGGAGCACGCTCTCCTaGGAAGCTGCCAGCTGCCTG +
Preference number: 2 (lower is better)
Translates to: PVSSSEFMHRAWAWDPVKWSTLS*EAASCL
Trigger: CAGGCAGCTGGCAGCTTCTCAGGAGAGCGTGCTCCA...CTTCACTGGATCCCAGGCCCAGGCTCGATGCATGAACTCAGATGAGGAAACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp AGAAGCCCAGGAAACACTGCTGAAGGCTGGACAAGGGTGCCTTGGTTTGCCCCAGCCAGGAGAGCCTCATaGAGGTGGGAGCTCTGTCTG +
Preference number: 2 (lower is better)
Translates to: RSPGNTAEGWTRVPWFAPARRAS*RWELCL
Trigger: CAGACAGAGCTCCCACCTCCATGAGGCTCTCCTGGC...TGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTCCTGGGCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp AGAAGCCCAGGAAACACTGCTGAAGGCTGGACAAGGGTGCCTTGGTTTGCCCCAGACAGAAACATGACCTaGAGCGCAGCCTGGGTCCCA +
Preference number: 2 (lower is better)
Translates to: RSPGNTAEGWTRVPWFAPDRNMT*SAAWVP
Trigger: TGGGACCCAGGCTGCGCTGCAGGTCATGTTTCTGTC...TGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTCCTGGGCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAACACCTCTGGGCCAGATaGATGAGAAGCACCTGTAGG +
Preference number: 2 (lower is better)
Translates to: GLEEDTRHKPQLLTCRREHLWAR*MRSTCR
Trigger: CCTACAGGTGCTTCTCATGCATCTGGCCCAGAGGTG...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGAGACATAATTCCAGGTGTGACGGGCTCAGCTaGCTCCCATTCTCGACCACC +
Preference number: 2 (lower is better)
Translates to: PPPTKDPHSTLSLRHNSRCDGLS*LPFSTT
Trigger: GGTGGTCGAGAATGGGAGGCAGCTGAGCCCGTCACA...CCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR GCA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGCTATCTGCATGTGCCTaGACGTGCCACACCCAGCCC +
Preference number: 2 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQLSACA*TCHTQP
Trigger: GGGCTGGGTGTGGCACGTGCAGGCACATGCAGATAG...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR-3UTR CCA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCACCCTCGAGACCCCATaGTGGGAGGGGCTCTACTCC +
Preference number: 2 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSTLETP*WEGLYS
Trigger: GGAGTAGAGCCCCTCCCACCATGGGGTCTCGAGGGT...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR-3UTR TCA 90 bp GAACCACCATGTGGTTGCTGGGAATTAAACTCAGGGCCTCTAGAACAGTCAGTCTACTTTCTGGGTGTGTaGCGGGCTCAGCTGCCTCCC +
Preference number: 2 (lower is better)
Translates to: EPPCGCWELNSGPLEQSVYFLGV*RAQLPP
Trigger: GGGAGGCAGCTGAGCCCGTCACACACCCAGAAAGTA...GACTGACTGTTCTAGAGGCCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR TCA 90 bp GAACCACCATGTGGTTGCTGGGAATTAAACTCAGGGCCTCTAGAACAGTCAGTCACGGCACATCAGTACTaGGCCTGGGAGCTGGAGGGA +
Preference number: 2 (lower is better)
Translates to: EPPCGCWELNSGPLEQSVTAHQY*AWELEG
Trigger: TCCCTCCAGCTCCCAGGCTCAGTACTGATGTGCCGT...GACTGACTGTTCTAGAGGCCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR TCA 90 bp CCAGTCCTCCCCACGCCTGAGGCCCTCCTCCATAACATGGAAGCTTCCACAGTAATCCTCAGCTTTTCTTaGAAACCAAGAAGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: PVLPTPEALLHNMEASTVILSFS*KPRSPG
Trigger: TCCTGGGCTTCTTGGTTTTCAAGAAAAGCTGAGGAT...TACTGTGGAAGCTTCCATGTTATGGAGGAGGGCCTCAGGCGTGGGGAGGACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCAGCTAAAGTGGCGATaGTTAGACTCTTCCGAGTCC +
Preference number: 2 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDQLKWR*LDSSES
Trigger: GGACTCGGAAGAGTCTAAGCATCGCCACTTTAGCTG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR GCA 90 bp AGCTTGCCCAGAGCAGCTGCTCTGTTCTCTGCTAGAGAACATGTGGAGCACGCTGCTGAGAAGATAGGCTaGCAAAATCCAACAGCACCC +
Preference number: 2 (lower is better)
Translates to: SLPRAAALFSAREHVEHAAEKIG*QNPTAP
Trigger: GGGTGCTGTTGGATTTTGGCAGCCTATCTTCTCAGC...AGCGTGCTCCACATGTTCTCTAGCAGAGAACAGAGCAGCTGCTCTGGGCAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CAA 90 bp GTTCTAAAACCGGAACCGAACCAACCGCTTCCAGCTGGCTCTCCTTaGGCCAACTTTCCCCCTTGGGTCTGGAAATGTGGTGATATGACA +
Preference number: 2 (lower is better)
Translates to: VLKPEPNQPLPAGSP*ANFPPWVWKCGDMT
Trigger: TGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCGGTTCCGGTTTTAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CAA 90 bp CAGCCAGCCCACACAAATCTCCCTGTAATCCTAACTGGAGCATGGTaGTCAGGCAACACCCATGTGAACAAGGCATGGGTGTCATTCGGA +
Preference number: 2 (lower is better)
Translates to: QPAHTNLPVILTGAW*SGNTHVNKAWVSFG
Trigger: TCCGAATGACACCCATGCCTTGTTCACATGGGTGTTGCCTGACAACCATGCTCCAGTTAGGATTACAGGGAGATTTGTGTGGGCTGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CAA 90 bp CCAACAGTCAACGGGAGGTGGCCCTTGGCAACCTCTGGCCTCACCTaGCCAGAGGTTCTGGTGAAGTGTGTGCCATTTAAACAATATGAT +
Preference number: 2 (lower is better)
Translates to: PTVNGRWPLATSGLT*PEVLVKCVPFKQYD
Trigger: ATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGTGAGGCCAGAGGTTGCCAAGGGCCACCTCCCGTTGACTGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGACCAGGGCCCCACATATaGGCAATTACTGTGGCTGGT +
Preference number: 2 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRPGPHI*AITVAG
Trigger: ACCAGCCACAGTAATTGCGCATATGTGGGGCCCTGG...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGACTGAGCCTGGGAGCTaGAGGGAGTTAGGGGTGAGC +
Preference number: 2 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLTEPGS*RELGVS
Trigger: GCTCACCCCTAACTCCCTCCAGCTCCCAGGCTCAGT...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR TCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACATCCAAGGATCAGTCTaGGATGGACAGCTGCAGTCA +
Preference number: 2 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHIQGSV*DGQLQS
Trigger: TGACTGCAGCTGTCCATCTCAGACTGATCCTTGGAT...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR TCA 90 bp CTGGGTTTGTTTCAGAAATGCTTGTACTTTCTGAGCTGTCTTGCCAGCGCTAGGAAATGGACAGAAACATaGCCTGCAGCGCAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: LGLFQKCLYFLSCLASARKWTET*PAAQPG
Trigger: CCCAGGCTGCGCTGCAGGTCATGTTTCTGTCCATTT...CCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR TCA 90 bp CCAGTCCTCCCCACGCCTGAGGCCCTCCTCCATAACATGGAAGCTTCCACAGTACAAAACGTGACTGGATaGATGTTCAATCATTGTCTG +
Preference number: 2 (lower is better)
Translates to: PVLPTPEALLHNMEASTVQNVTG*MFNHCL
Trigger: CAGACAATGATTGAACATTCATCCAGTCACGTTTTG...TACTGTGGAAGCTTCCATGTTATGGAGGAGGGCCTCAGGCGTGGGGAGGACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR TCA 90 bp ACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCAAGGTTACCCTGCTTTTCTCTCCTaGATATTGCGATCACAGGCA +
Preference number: 2 (lower is better)
Translates to: TTEPSPQPHNKFLARQGYPAFLS*ILRSQA
Trigger: TGCCTGTGATCGCAATATTCAGGAGAGAAAAGCAGG...GTAACCTTGCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR GCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACACTCCTCTGCAGAGATaGCTGGTTTTACTGCGAGAC +
Preference number: 2 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHTPLQR*LVLLRD
Trigger: GTCTCGCAGTAAAACCAGGCATCTCTGCAGAGGAGT...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAATGGCACGTTAGAATCTaGCTCTCTCTTCTGATCAAA +
Preference number: 2 (lower is better)
Translates to: GLEEDTRHKPQLLTCRREWHVRI*LSLLIK
Trigger: TTTGATCAGAAGAGAGAGCCAGATTCTAACGTGCCA...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp CCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGAGACATAATTCCAGGTTTACCAGTACTTTCTaGGTGTGTGACGGGCTCAGC +
Preference number: 2 (lower is better)
Translates to: PPPTKDPHSTLSLRHNSRFTSTF*VCDGLS
Trigger: GCTGAGCCCGTCACACACCCAGAAAGTACTGGTAAA...CCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR GCA 90 bp GATCGAGTTCCAAGACAGCCAGGGCTACACAGAGAACCTTATCTTGAAAAATCAGACCAGCTCACAGCTTaGCCAGAGCAGCTGCTCTGT +
Preference number: 2 (lower is better)
Translates to: DRVPRQPGLHREPYLEKSDQLTA*PEQLLC
Trigger: ACAGAGCAGCTGCTCTGGGCAAGCTGTGAGCTGGTC...TGATTTTTCAAGATAAGGTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGAGACATAATTCCAGGGCTACAGAAGGAGAGTaGTGTCTCTTCTTGGATAGG +
Preference number: 2 (lower is better)
Translates to: PPPTKDPHSTLSLRHNSRATEGE*CLFLDR
Trigger: CCTATCCAAGAAGAGACAGCACTCTCCTTCTGTAGC...CCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR CCA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTGATCAGCAGCTAAAGTaGCGATGCTTAGACTCTTCC +
Preference number: 2 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSDQQLK*RCLDSS
Trigger: GGAAGAGTCTAAGCATCGCCACTTTAGCTGCTGATC...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR CCA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACCACAGGATTCTGTCCTaGTTGGTCATGTTTCCCAGT +
Preference number: 2 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHHRILS*LVMFPS
Trigger: ACTGGGAAACATGACCAACCAGGACAGAATCCTGTG...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR CCA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGAGTAGGACAAACAAGATaGTCCAGCCCCACAGGATTC +
Preference number: 2 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRVGQTR*SSPTGF
Trigger: GAATCCTGTGGGGCTGGACCATCTTGTTTGTCCTAC...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp TGTTGTTGTTGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACACCCACGTACATCACGCCTTCCACTGTaGGTACGTTGTCTGGGTTTG +
Preference number: 2 (lower is better)
Translates to: CCCCCMWFWCCTRAHPRTSRLPL*VRCLGL
Trigger: CAAACCCAGACAACGTACCCACAGTGGAAGGCGTGA...TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR TCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAATCCAAGGATCAGTCTaGGATGGACAGCTGCAGTCA +
Preference number: 2 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRIQGSV*DGQLQS
Trigger: TGACTGCAGCTGTCCATCTCAGACTGATCCTTGGAT...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR TCA 90 bp ACCATAGCCTGGCCGAGACCCTGTTTTAAGAAGCAAAATCATCAGAAGAGCATCGGTGAGCTACATTTCTaGCTCACCTCTGGGCCAGAT +
Preference number: 2 (lower is better)
Translates to: TIAWPRPCFKKQNHQKSIGELHF*LTSGPD
Trigger: ATCTGGCCCAGAGGTGAGTCAGAAATGTAGCTCACC...GATGCTCTTCTGATGATTTTGCTTCTTAAAACAGGGTCTCGGCCAGGCTATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR TCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAAAGCATCAAGTTTGTCTaGAAGATAGATAGGGCTAAT +
Preference number: 2 (lower is better)
Translates to: GLEEDTRHKPQLLTCRRESIKFV*KIDRAN
Trigger: ATTAGCCCTATCTATCTTTCAGACAAACTTGATGCT...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp ACCTGTAGGGCACGCATAAACACAGGTCAACAACTTTCTTTCTTGGTTTCCTGGCAGCTCCAAGTAGGCTaGACAACCACAGAGGTGAAC +
Preference number: 2 (lower is better)
Translates to: TCRARINTGQQLSFLVSWQLQVG*TTTEVN
Trigger: GTTCACCTCTGTGGTTGTGCAGCCTACTTGGAGCTG...CCAGGAAACCAAGAAAGAAAGTTGTTGACCTGTGTTTATGCGTGCCCTACAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCAGCTCCAAGTAGGCTaGACAACCACAGAGGTGAAC +
Preference number: 2 (lower is better)
Translates to: PQSILSLSSQSSSEARAGQLQVG*TTTEVN
Trigger: GTTCACCTCTGTGGTTGTGCAGCCTACTTGGAGCTG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR GCA 90 bp CGAAGGCAGGTGTATCTTAAGAGTTCGAGGCCAGCCTGGACTACAGATCGAGTTCAATCCCCTCCTTTCTaGCTTCTGAAAAGGAGGTTT +
Preference number: 2 (lower is better)
Translates to: RRQVYLKSSRPAWTTDRVQSPPF*LLKRRF
Trigger: AAACCTCCTTTTCAGAAGGCAGAAAGGAGGGGATTG...AACTCGATCTGTAGTCCAGGCTGGCCTCGAACTCTTAAGATACACCTGCCTTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp TGTTGTTGTTGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACACCCACGTACATTTCTGACTCACCTCTaGGCCAGATGCATGAGAAGC +
Preference number: 2 (lower is better)
Translates to: CCCCCMWFWCCTRAHPRTFLTHL*ARCMRS
Trigger: GCTTCTCATGCATCTGGCCCAGAGGTGAGTCAGAAA...TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp GAACCACCATGTGGTTGCTGGGAATTAAACTCAGGGCCTCTAGAACAGTCAGTCTTTGAGCTTGTGCAGTaGCTCATGCCTCTAATCCTG +
Preference number: 2 (lower is better)
Translates to: EPPCGCWELNSGPLEQSVFELVQ*LMPLIL
Trigger: CAGGATTAGAGGCATGAGCCACTGCACAAGCTCAAA...GACTGACTGTTCTAGAGGCCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR CCA 90 bp GGCACAATCCCACAGACCCTTATCCAACACATGCATTTAGTATTCCAATCTTTTCTCGAGACCCCATGGTaGGAGGGGCTCTACTCCCAA +
Preference number: 2 (lower is better)
Translates to: GTIPQTLIQHMHLVFQSFLETPW*EGLYSQ
Trigger: TTGGGAGTAGAGCCCCTCCCACCATGGGGTCTCGAG...AAAAGATTGGAATACTAAATGCATGTGTTGGATAAGGGTCTGTGGGATTGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR-3UTR TCA 90 bp AATAAAGCACAAGACAAGGACTGCCACCAAGGAAGCAACGGGTGGTGTTCTGATGATGCTCAAACCAAGTaGGCCAGAGCAAGGGATAAA +
Preference number: 2 (lower is better)
Translates to: NKAQDKDCHQGSNGWCSDDAQTK*ARARDK
Trigger: TTTATCCCTTGCTCTGGCTCACTTGGTTTGAGCATC...ATCAGAACACCACCCGTTGCTTCCTTGGTGGCAGTCCTTGTCTTGTGCTTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CGAAGGCAGGTGTATCTTAAGAGTTCGAGGCCAGCCTGGACTACAGATCGAGTTAATTACCAGCAGCCATaGCCAGTGATGGAAGATTTT +
Preference number: 2 (lower is better)
Translates to: RRQVYLKSSRPAWTTDRVNYQQP*PVMEDF
Trigger: AAAATCTTCCATCACTGGGCATGGCTGCTGGTAATT...AACTCGATCTGTAGTCCAGGCTGGCCTCGAACTCTTAAGATACACCTGCCTTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGAAGACTGGGGCTTAAATaGAACTGCTGCCTGCTTTTT +
Preference number: 2 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRRLGLK*NCCLLF
Trigger: AAAAAGCAGGCAGCAGTTGCATTTAAGCCCCAGTCT...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp TCTGGAGTGAGGGTGTGTCATTTTGGCTCCAGGAATAACACAGCTTCCCTCTTCTGTTTCCATCCAAAATaGACACAAACCGCTTCTTCT +
Preference number: 2 (lower is better)
Translates to: SGVRVCHFGSRNNTASLFCFHPK*TQTASS
Trigger: AGAAGAAGCGGTTTGTGTGCATTTTGGATGGAAACA...GAAGAGGGAAGCTGTGTTATTCCTGGAGCCAAAATGACACACCCTCACTCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp GATCGAGTTCCAAGACAGCCAGGGCTACACAGAGAACCTTATCTTGAAAAATCATCAGAACTGGCACCTTaGCTTAATCTGCAAGGCCAT +
Preference number: 2 (lower is better)
Translates to: DRVPRQPGLHREPYLEKSSELAP*LNLQGH
Trigger: ATGGCCTTGCAGATTAAGGCAAGGTGCCAGTTCTGA...TGATTTTTCAAGATAAGGTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGAGCTGGTTTGAATTTCTaGAAGGAAGACATACAAAGG +
Preference number: 2 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRAGLNF*KEDIQR
Trigger: CCTTTGTATGTCTTCCTTGCAGAAATTCAAACCAGC...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp CTGGGTTTGTTTCAGAAATGCTTGTACTTTCTGAGCTGTCTTGCCAGCGCTAGGGGTTCCATATGCTTTTaGGAAACTGGAGACTTTGCT +
Preference number: 2 (lower is better)
Translates to: LGLFQKCLYFLSCLASARGSICF*ETGDFA
Trigger: AGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACC...CCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGGTTCCATATGCTTTTaGGAAACTGGAGACTTTGCT +
Preference number: 2 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRGSICF*ETGDFA
Trigger: AGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACC...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR CCA 90 bp ACCTTGCCAGAGGTTCTGGTGAAGTGTGTGCCATTTAAACAATATGATTCACAACCAGAGCAGGCTGTGTaGGAGCTTTCCTATTTCTCG +
Preference number: 2 (lower is better)
Translates to: TLPEVLVKCVPFKQYDSQPEQAV*ELSYFS
Trigger: CGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGG...TTGTGAATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp ACCATAGCCTGGCCGAGACCCTGTTTTAAGAAGCAAAATCATCAGAAGAGCATCCTGACTCTGACTTTTTaGACTAGCAAGCTAGATGGC +
Preference number: 2 (lower is better)
Translates to: TIAWPRPCFKKQNHQKSILTLTF*TSKLDG
Trigger: GCCATCTAGCTTGCTAGTCCAAAAAGTCAGAGTCAG...GATGCTCTTCTGATGATTTTGCTTCTTAAAACAGGGTCTCGGCCAGGCTATGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp GAACCACCATGTGGTTGCTGGGAATTAAACTCAGGGCCTCTAGAACAGTCAGTCGATCTTAGTCTAACCTaGACTACCTACAGAATTCCA +
Preference number: 2 (lower is better)
Translates to: EPPCGCWELNSGPLEQSVDLSLT*TTYRIP
Trigger: TGGAATTCTGTAGGTAGTCCAGGTTAGACTAAGATC...GACTGACTGTTCTAGAGGCCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR TCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGAAATGGACAGAAACATaGCCTGCAGCGCAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLKWTET*PAAQPG
Trigger: CCCAGGCTGCGCTGCAGGTCATGTTTCTGTCCATTT...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR GCA 90 bp ACCTTGCCAGAGGTTCTGGTGAAGTGTGTGCCATTTAAACAATATGATTCACAACAGCTAAAGTGGCGATaGTTAGACTCTTCCGAGTCC +
Preference number: 2 (lower is better)
Translates to: TLPEVLVKCVPFKQYDSQQLKWR*LDSSES
Trigger: GGACTCGGAAGAGTCTAAGCATCGCCACTTTAGCTG...TTGTGAATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp TGTTGTTGTTGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACACCCACGTACAAGAAAACACAAACTTTaGCAATTACCAGCAGCCATG +
Preference number: 2 (lower is better)
Translates to: CCCCCMWFWCCTRAHPRTRKHKL*QLPAAM
Trigger: CATGGCTGCTGGTAATTGGCAAAGTTTGTGTTTTCT...TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR GCA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGAACAACCATTTCTaGAGTTCACTATTCCTGTTA +
Preference number: 2 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSQNNHF*SSLFLL
Trigger: TAACAGGAATAGTGAACTGCAGAAATGGTTGTTCTG...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CAA 90 bp ATCTTTCTATGCAGCCCTGCCTATGCAAGTAAAACTGACCTCAAGTaGACAGCAATTCTCCTGCTTTTCTCTCCTGAATATTGCGATCAC +
Preference number: 2 (lower is better)
Translates to: IFLCSPAYASKTDLK*TAILLLFSPEYCDH
Trigger: GTGATCGCAATATTCAGGAGAGAAAAGCAGGAGAATTGCTGTCAACTTGAGGTCAGTTTTACTTGCATAGGCAGGGCTGCATAGAAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR TCA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGTTTGTTGGAGTTCATTaGTGTGAGTTTGCTTCTCAC +
Preference number: 2 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLFVGVH*CEFASH
Trigger: GTGAGAAGCAAACTCACATCAATGAACTCCAACAAA...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR CCA 90 bp GATCGAGTTCCAAGACAGCCAGGGCTACACAGAGAACCTTATCTTGAAAAATCACAGGATAGGAAGAGATaGTTTACCTTTGGAAACAGA +
Preference number: 2 (lower is better)
Translates to: DRVPRQPGLHREPYLEKSQDRKR*FTFGNR
Trigger: TCTGTTTCCAAAGGTAAACCATCTCTTCCTATCCTG...TGATTTTTCAAGATAAGGTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCGATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp ACCTGTAGGGCACGCATAAACACAGGTCAACAACTTTCTTTCTTGGTTTCCTGGAATGCTGGTCCAATCTaGTGGAGTAGTAAGAAAAAT +
Preference number: 2 (lower is better)
Translates to: TCRARINTGQQLSFLVSWNAGPI*WSSKKN
Trigger: ATTTTTCTTACTACTCCACCAGATTGGACCAGCATT...CCAGGAAACCAAGAAAGAAAGTTGTTGACCTGTGTTTATGCGTGCCCTACAGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGGATCAGCAGCTAAAGTaGCGATGCTTAGACTCTTCC +
Preference number: 2 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLDQQLK*RCLDSS
Trigger: GGAAGAGTCTAAGCATCGCCACTTTAGCTGCTGATC...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 90 bp GACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTaGAATAAACTAACTAACTATCTATCTATCTATCTCCATGCTTTT +
Preference number: 2 (lower is better)
Translates to: DRRFASLNLYNFRPC*NKLTNYLSIYLHAF
Trigger: AAAAGCATGGAGATAGATAGATAGATAGTTAGTTAGTTTATTCAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp GAAGCCCAGGAAACACTGCTGAAGGCTGGACAAGGGTaGCTTGGTTTGCCCCAGTCGGTGCCACGCCCTGAT +
Preference number: 3 (lower is better)
Translates to: EAQETLLKAGQG*LGLPQSVPRPD
Trigger: ATCAGGGCGTGGCACCGACTGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTCCTGGGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GCCCACCAATCTCCCTCACAGAATGAATGCCAAGACTaGGCACGGCCAGGAGAGCCTCATGGAGGTGGGAGC +
Preference number: 3 (lower is better)
Translates to: AHQSPSQNECQD*ARPGEPHGGGS
Trigger: GCTCCCACCTCCATGAGGCTCTCCTGGCCGTGCTCAGTCTTGGCATTCATTCTGTGAGGGAGATTGGTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp ATAGCTGCCGCTCAGCAGGTAGGCAGGTGCTGGCCTTaGAGAAGACACCAGACACAAGCCCCAGCTGCTCAC +
Preference number: 3 (lower is better)
Translates to: IAAAQQVGRCWP*RRHQTQAPAAH
Trigger: GTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCCAGCACCTGCCTACCTGCTGAGCGGCAGCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CCAAGACTGAGCACGGCCAGGAGAGCCTCATGGAGGTaGGAGCTCTGTCTGCTCAGTCTGGATTCCACAGTG +
Preference number: 3 (lower is better)
Translates to: PRLSTARRASWR*ELCLLSLDSTV
Trigger: CACTGTGGAATCCAGACTGAGCAGACAGAGCTCCCACCTCCATGAGGCTCTCCTGGCCGTGCTCAGTCTTGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CCCAACAGTCAACGGGAGGTGGCCCTTGGCAACCTCTaGCCTCACCTTGCCAGAGGTTCTGGTGAAGTGTGT +
Preference number: 3 (lower is better)
Translates to: PNSQREVALGNL*PHLARGSGEVC
Trigger: ACACACTTCACCAGAACCTCTGGCAAGGTGAGGCCAGAGGTTGCCAAGGGCCACCTCCCGTTGACTGTTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GCCGTGAGTCTGGAACAACTCAAGCACAGCCTGCCTTaGGTCGCTGAGGGATCACACTGGGTGAGTTCAGCC +
Preference number: 3 (lower is better)
Translates to: AVSLEQLKHSLP*VAEGSHWVSSA
Trigger: GGCTGAACTCACCCAGTGTGATCCCTCAGCGACTCAAGGCAGGCTGTGCTTGAGTTGTTCCAGACTCACGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp AGATATCCCCGTGTGCGCCTTCAGCTCCAAGTAGGCTaGACAACCACAGAGGTGAACTGGGGAGCCAGAGAG +
Preference number: 3 (lower is better)
Translates to: RYPRVRLQLQVG*TTTEVNWGARE
Trigger: CTCTCTGGCTCCCCAGTTCACCTCTGTGGTTGTGCAGCCTACTTGGAGCTGAAGGCGCACACGGGGATATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR GCA 72 bp GTAAAAATAGAACCCCAGGTTGGCGCGTGGGATAGCTaGCGCTCAGCAGGTAGGCAGGTGCTGGCCTTGAAG +
Preference number: 3 (lower is better)
Translates to: VKIEPQVGAWDS*RSAGRQVLALK
Trigger: CTTCAAGGCCAGCACCTGCCTACCTGCTGAGCGGCAGCTATCCCACGCGCCAACCTGGGGTTCTATTTTTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CGGAACCGAACCAACCGCTTCCAGCTGGCTCTCCTTTaGCCAACTTTCCCCCTTGGGTCTGGAAATGTGGTG +
Preference number: 3 (lower is better)
Translates to: RNRTNRFQLALL*PTFPLGSGNVV
Trigger: CACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCGGTTCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp CACAATGGCTGGGTAGGTCTGCGCTTCAAGGGCAGGTaGGCTACATTTCTGACTCACCTCTGGGCCAGATGC +
Preference number: 3 (lower is better)
Translates to: HNGWVGLRFKGR*ATFLTHLWARC
Trigger: GCATCTGGCCCAGAGGTGAGTCAGAAATGTAGCTCACCTGCCCTTGAAGCGCAGACCTACCCAGCCATTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp CCCTCGGCTAAAGAGCCAGAATCTCAGCCACAGCCGTaGGTCTGGAACAACTCAAGCACAGCCTGCCTTGAG +
Preference number: 3 (lower is better)
Translates to: PSAKEPESQPQP*VWNNSSTACLE
Trigger: CTCAAGGCAGGCTGTGCTTGAGTTGTTCCAGACTCACGGCTGTGGCTGAGATTCTGGCTCTTTAGCCGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp CCAGAGAGGTGCGTTTACCAGTACTTTCTGGGTGTGTaGCGGGCTCAGCTGCCTCCCATTCTCGACCACCTT +
Preference number: 3 (lower is better)
Translates to: PERCVYQYFLGV*RAQLPPILDHL
Trigger: AAGGTGGTCGAGAATGGGAGGCAGCTGAGCCCGTCACACACCCAGAAAGTACTGGTAAACGCACCTCTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 72 bp CCTAGAGGAGGAGGGAGAGGTATCTGGGGTCCCCAGTaGGTATCAAGGGTGAACCAAGAGGCAGGAAAGAAG +
Preference number: 3 (lower is better)
Translates to: PRGGGRGIWGPQ*VSRVNQEAGKK
Trigger: CTTCTTTCCTGCCTCTTGGTTCACCCTTGATACTCACTGGGGACCCCAGATACCTCTCCCTCCTCCTCTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GGGGTGAGCCCACAGTCCTCTCCAGAGCACACAAGCTaGTGCTTCAGTGTAACCAGAGAGGTGCGTTTACCA +
Preference number: 3 (lower is better)
Translates to: GVSPQSSPEHTS*CFSVTREVRLP
Trigger: TGGTAAACGCACCTCTCTGGTTACACTGAAGCATCAGCTTGTGTGCTCTGGAGAGGACTGTGGGCTCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp GGCTCTACTCCCAAAAGGTATCCTTCTATCTGCATGTaGCTGCACGTGCCACACCCAGCCCCTATTCCCATG +
Preference number: 3 (lower is better)
Translates to: GSTPKRYPSICM*LHVPHPAPIPM
Trigger: CATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGCACATGCAGATAGAAGGATACCTTTTGGGAGTAGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CCA 72 bp AGTTCTAAAACCGGAACCGAACCAACCGCTTCCAGCTaGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTG +
Preference number: 3 (lower is better)
Translates to: SSKTGTEPTASS*LSFGQLSPLGL
Trigger: CAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCGGTTCCGGTTTTAGAACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CAGTGTAACCAGAGAGGTGCGTTTACCAGTACTTTCTaGGTGTGTGACGGGCTCAGCTGCCTCCCATTCTCG +
Preference number: 3 (lower is better)
Translates to: QCNQRGAFTSTF*VCDGLSCLPFS
Trigger: CGAGAATGGGAGGCAGCTGAGCCCGTCACACACCCAGAAAGTACTGGTAAACGCACCTCTCTGGTTACACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 72 bp AGGGTGCCTTGGTTTGCCCCAGTCGGTGCCACGCCCTaGTGTCTCTCTTCAAGGTGCTATGTTACTGTTTTC +
Preference number: 3 (lower is better)
Translates to: RVPWFAPVGATP*CLSSRCYVTVF
Trigger: GAAAACAGTAACATAGCACCTTGAAGAGAGACATCAGGGCGTGGCACCGACTGGGGCAAACCAAGGCACCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GGGATGACCTCACTGCGGTTTCCACTGCTGGGAAGGTaGCCAGCTGTTCTTTCTCCTCTATGCTGCAGACAA +
Preference number: 3 (lower is better)
Translates to: GMTSLRFPLLGR*PAVLSPLCCRQ
Trigger: TTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTGGAAACCGCAGTGAGGTCATCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp CACCACCTACAAAAGACCCGCACTCCACACTGTCACTaGGACATAATTCCAGGGCCAGGCAAAGCCCAGGAA +
Preference number: 3 (lower is better)
Translates to: HHLQKTRTPHCH*DIIPGPGKAQE
Trigger: TTCCTGGGCTTTGCCTGGCCCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp AGATGCCTGGTTTTACTGCGAGACCAGCTCACAGCTTaGCCAGAGCAGCTGCTCTGTTCTCTGCTAGAGAAC +
Preference number: 3 (lower is better)
Translates to: RCLVLLRDQLTA*PEQLLCSLLEN
Trigger: GTTCTCTAGCAGAGAACAGAGCAGCTGCTCTGGGCAAGCTGTGAGCTGGTCTCGCAGTAAAACCAGGCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp GCTGAGGGATCACACTGGGTGAGTTCAGCCTTTCTTTaGCCCCAAGTTCTAAAACCGGAACCGAACCAACCG +
Preference number: 3 (lower is better)
Translates to: AEGSHWVSSAFL*PQVLKPEPNQP
Trigger: CGGTTGGTTCGGTTCCGGTTTTAGAACTTGGGGGCAAAGAAAGGCTGAACTCACCCAGTGTGATCCCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp AATAAAGCACAAGACAAGGACTGCCACCAAGGAAGCAACGGGTGGTGTTCTGATCCAGCTGGCTCTCCTTaGGCCAACTTTCCCCCTTGG +
Preference number: 3 (lower is better)
Translates to: NKAQDKDCHQGSNGWCSDPAGSP*ANFPPW
Trigger: CCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGG...ATCAGAACACCACCCGTTGCTTCCTTGGTGGCAGTCCTTGTCTTGTGCTTTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp CCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTaGGATGGACAGCTGCAGTCAGATCTAATGGACATG +
Preference number: 3 (lower is better)
Translates to: PLSEQAQIQGSV*DGQLQSDLMDM
Trigger: CATGTCCATTAGATCTGACTGCAGCTGTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp GATGGCTACCTCGATGCAGGGAAAACGCCCAGGTCCTaGCAACGTCTGCACATTAATCAGCCAGTTTCACGT +
Preference number: 3 (lower is better)
Translates to: DGYLDAGKTPRS*QRLHINQPVSR
Trigger: ACGTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTGCATCGAGGTAGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp CCAACTTTCCCCCTTGGGTCTGGAAATGTGGTGATATaGCAAGGGCCAAACACTGTGGGGATACCTGGTGTC +
Preference number: 3 (lower is better)
Translates to: PTFPLGSGNVVI*QGPNTVGIPGV
Trigger: GACACCAGGTATCCCCACAGTGTTTGGCCCTTGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp TCTGGAACAACTCAAGCACAGCCTGCCTTGAGTCGCTaGGGGATCACACTGGGTGAGTTCAGCCTTTCTTTG +
Preference number: 3 (lower is better)
Translates to: SGTTQAQPALSR*GITLGEFSLSL
Trigger: CAAAGAAAGGCTGAACTCACCCAGTGTGATCCCTCAGCGACTCAAGGCAGGCTGTGCTTGAGTTGTTCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GGAGAGGTATCTGGGGTCCCCAGTGAGTATCAAGGGTaGACCAAGAGGCAGGAAAGAAGACTACTGGCTGAA +
Preference number: 3 (lower is better)
Translates to: GEVSGVPSEYQG*TKRQERRLLAE
Trigger: TTCAGCCAGTAGTCTTCTTTCCTGCCTCTTGGTTCACCCTTGATACTCACTGGGGACCCCAGATACCTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp ATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTaGTTCACGCCTTCCACTGTGGGTACGTTGTCTGGG +
Preference number: 3 (lower is better)
Translates to: MRKPKKTTLGQG*FTPSTVGTLSG
Trigger: CCCAGACAACGTACCCACAGTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp CCTGCGTGTATGTCTATACACCACTGGTATGCCTGCTaGCCTCAGAGGTCAGAAGGAGTAATCGGATCCCTT +
Preference number: 3 (lower is better)
Translates to: PACMSIHHWYAC*PQRSEGVIGSL
Trigger: AAGGGATCCGATTACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp TTGCCTGCGTGTATGTCTATACACCACTGGTATGCCTaGTGCCCTCAGAGGTCAGAAGGAGTAATCGGATCC +
Preference number: 3 (lower is better)
Translates to: LPACMSIHHWYA*CPQRSEGVIGS
Trigger: GGATCCGATTACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp CCAAAAGGTATCCTTCTATCTGCATGTGCCTGCACGTaGCACACCCAGCCCCTATTCCCATGTGTGTACACA +
Preference number: 3 (lower is better)
Translates to: PKGILLSACACT*HTQPLFPCVYT
Trigger: TGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGCACATGCAGATAGAAGGATACCTTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CCA 72 bp GCTGGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTaGAAATGTGGTGATATGACAAGGGCCAAACACTGT +
Preference number: 3 (lower is better)
Translates to: AGSPLANFPPWV*KCGDMTRAKHC
Trigger: ACAGTGTTTGGCCCTTGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp CCAGTTTCCTCATCTGAGTTCATGCATCGAGCCTGGGCCTGGGATCCAGTGAAGGGGTTCCATATGCTTTaGGGAAACTGGAGACTTTGC +
Preference number: 3 (lower is better)
Translates to: PVSSSEFMHRAWAWDPVKGFHML*GNWRLC
Trigger: GCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCC...CTTCACTGGATCCCAGGCCCAGGCTCGATGCATGAACTCAGATGAGGAAACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp CACTCCCAACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCAAAACTGACCTCAAGTaGACAGCAATTCTCCTGCTT +
Preference number: 3 (lower is better)
Translates to: HSQPLSHLPSPITSFWQGKTDLK*TAILLL
Trigger: AAGCAGGAGAATTGCTGTCAACTTGAGGTCAGTTTT...GCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGTTGGGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 72 bp GACAGTGTAAGTTCCACATCAAAATGGACAGAAACATaGCCTGCAGCGCAGCCTGGGTCCCAGCAGTACTTG +
Preference number: 3 (lower is better)
Translates to: DSVSSTSKWTET*PAAQPGSQQYL
Trigger: CAAGTACTGCTGGGACCCAGGCTGCGCTGCAGGTCATGTTTCTGTCCATTTTGATGTGGAACTTACACTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp ATTAGCAATTTAGGCCCACCAATCTCCCTCACAGAATaGATGCCAAGACTGAGCACGGCCAGGAGAGCCTCA +
Preference number: 3 (lower is better)
Translates to: ISNLGPPISLTE*MPRLSTARRAS
Trigger: TGAGGCTCTCCTGGCCGTGCTCAGTCTTGGCATTCATTCTGTGAGGGAGATTGGTGGGCCTAAATTGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp TTTGGCCAACTTTCCCCCTTGGGTCTGGAAATGTGGTaGTATGACAAGGGCCAAACACTGTGGGGATACCTG +
Preference number: 3 (lower is better)
Translates to: FGQLSPLGLEMW*YDKGQTLWGYL
Trigger: CAGGTATCCCCACAGTGTTTGGCCCTTGTCATATCACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp CTTGTGCCTTGTCAGAACTGGCACCTTGCCTTAATCTaGAAGGCCATTCTCATTCCTGGCTCAACGATGAGG +
Preference number: 3 (lower is better)
Translates to: LVPCQNWHLALI*KAILIPGSTMR
Trigger: CCTCATCGTTGAGCCAGGAATGAGAATGGCCTTGCAGATTAAGGCAAGGTGCCAGTTCTGACAAGGCACAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp TGTTTTGCCTGCGTGTATGTCTATACACCACTGGTATaGCTGCTGCCCTCAGAGGTCAGAAGGAGTAATCGG +
Preference number: 3 (lower is better)
Translates to: CFACVYVYTPLV*LLPSEVRRSNR
Trigger: CCGATTACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGGCAAAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CCA 72 bp GCCCACACAAATCTCCCTGTAATCCTAACTGGAGCATaGTTGTCAGGCAACACCCATGTGAACAAGGCATGG +
Preference number: 3 (lower is better)
Translates to: AHTNLPVILTGA*LSGNTHVNKAW
Trigger: CCATGCCTTGTTCACATGGGTGTTGCCTGACAACCATGCTCCAGTTAGGATTACAGGGAGATTTGTGTGGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp GCAGCCAGCCCACACAAATCTCCCTGTAATCCTAACTaGAGCATGGTTGTCAGGCAACACCCATGTGAACAA +
Preference number: 3 (lower is better)
Translates to: AASPHKSPCNPN*SMVVRQHPCEQ
Trigger: TTGTTCACATGGGTGTTGCCTGACAACCATGCTCCAGTTAGGATTACAGGGAGATTTGTGTGGGCTGGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTGGGTTCCATATGCTTTaGGGAAACTGGAGACTTTGC +
Preference number: 3 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSGFHML*GNWRLC
Trigger: GCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCC...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR CAA 90 bp CGAACCAACCGCTTCCAGCTGGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTGATAGAGATCTGACTTaGAAATTAACAGCAGCAGAA +
Preference number: 3 (lower is better)
Translates to: RTNRFQLALLWPTFPLGSDRDLT*KLTAAE
Trigger: TTCTGCTGCTGTTAATTTCAAAGTCAGATCTCTATC...AGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp CACTCCCAACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCGTCCTTTTTGGTTTGTaGGAGTTCATTGATGTGAGT +
Preference number: 3 (lower is better)
Translates to: HSQPLSHLPSPITSFWQGVLFGL*EFIDVS
Trigger: ACTCACATCAATGAACTCCAACAAACCAAAAAGGAC...GCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGTTGGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp TGTGCAGAGCAGGGAGAAGGGTGTTTCCATCCAAAATaGACACAAACCGCTTCTTCTCAGCAGGAACTAAGG +
Preference number: 3 (lower is better)
Translates to: CAEQGEGCFHPK*TQTASSQQELR
Trigger: CCTTAGTTCCTGCTGAGAAGAAGCGGTTTGTGTGCATTTTGGATGGAAACACCCTTCTCCCTGCTCTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp CTGGATTCCACAGTGATAATATGGCGTGAACTCCTCTaGAGAGATGCCTGGTTTTACTGCGAGACCAGCTCA +
Preference number: 3 (lower is better)
Translates to: LDSTVIIWRELL*RDAWFYCETSS
Trigger: TGAGCTGGTCTCGCAGTAAAACCAGGCATCTCTGCAGAGGAGTTCACGCCATATTATCACTGTGGAATCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp AAGACATACAAAGGACCATCTGATCAGCAGGGAGGTTaGAGAATCCCCTCGGCTAAAGAGCCAGAATCTCAG +
Preference number: 3 (lower is better)
Translates to: KTYKGPSDQQGG*RIPSAKEPESQ
Trigger: CTGAGATTCTGGCTCTTTAGCCGAGGGGATTCTGCAACCTCCCTGCTGATCAGATGGTCCTTTGTATGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp ACAAGATGGTCCAGCCCCACAGGATTCTGTCCTGGTTaGTCATGTTTCCCAGTAAGAGAGAGAGAGCTGTTT +
Preference number: 3 (lower is better)
Translates to: TRWSSPTGFCPG*SCFPVRERELF
Trigger: AAACAGCTCTCTCTCTCTTACTGGGAAACATGACCAACCAGGACAGAATCCTGTGGGGCTGGACCATCTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CCA 72 bp ATGAGTGTTTTGCCTGCGTGTATGTCTATACACCACTaGTATGCCTGCTGCCCTCAGAGGTCAGAAGGAGTA +
Preference number: 3 (lower is better)
Translates to: MSVLPACMSIHH*YACCPQRSEGV
Trigger: TACTCCTTCTGACCTCTGAGGGCAGCAGGCATACCAGTGGTGTATAGACATACACGCAGGCAAAACACTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR CAA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAAAGAGATGGTTTACCTTaGGAAACAGAATTTCTGTAC +
Preference number: 3 (lower is better)
Translates to: GLEEDTRHKPQLLTCRRERDGLP*ETEFLY
Trigger: GTACAGAAATTCTGTTTCCAAAGGTAAACCATCTCT...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp ATACAAACCACGATTCTAATAATGTTGCTGCCCAGCTaGGTAATGGATAGCAGTCCTCCACGTCCAGCCGTC +
Preference number: 3 (lower is better)
Translates to: IQTTILIMLLPS*VMDSSPPRPAV
Trigger: GACGGCTGGACGTGGAGGACTGCTATCCATTACTCAGCTGGGCAGCAACATTATTAGAATCGTGGTTTGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp CCAGAAGAGGGCCTCAGATCCCATTATAGATGGTTGTaGACCACCATGTGGTTGCTGGGAATTAAACTCAGG +
Preference number: 3 (lower is better)
Translates to: PEEGLRSHYRWL*TTMWLLGIKLR
Trigger: CCTGAGTTTAATTCCCAGCAACCACATGGTGGTTCACAACCATCTATAATGGGATCTGAGGCCCTCTTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp CATCAAAAAGCTTGTGCCTTGTCAGAACTGGCACCTTaGCTTAATCTGCAAGGCCATTCTCATTCCTGGCTC +
Preference number: 3 (lower is better)
Translates to: HQKACALSELAP*LNLQGHSHSWL
Trigger: GAGCCAGGAATGAGAATGGCCTTGCAGATTAAGGCAAGGTGCCAGTTCTGACAAGGCACAAGCTTTTTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp TTCTGTCTGGCTCTTGATTGCATCAAACATTATGCCTaGTTAACTGAGAGATCCAGCCCTAGAGGAGGAGGG +
Preference number: 3 (lower is better)
Translates to: FCLALDCIKHYA*LTERSSPRGGG
Trigger: CCCTCCTCCTCTAGGGCTGGATCTCTCAGTTAAGCAGGCATAATGTTTGATGCAATCAAGAGCCAGACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CTCTGTCTGCTCAGTCTGGATTCCACAGTGATAATATaGCGTGAACTCCTCTGCAGAGATGCCTGGTTTTAC +
Preference number: 3 (lower is better)
Translates to: LCLLSLDSTVII*RELLCRDAWFY
Trigger: GTAAAACCAGGCATCTCTGCAGAGGAGTTCACGCCATATTATCACTGTGGAATCCAGACTGAGCAGACAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp GGTGATATGACAAGGGCCAAACACTGTGGGGATACCTaGTGTCTCAACAATAGAAGAGCATTTTGCCACCTC +
Preference number: 3 (lower is better)
Translates to: GDMTRAKHCGDT*CLNNRRAFCHL
Trigger: GAGGTGGCAAAATGCTCTTCTATTGTTGAGACACCAGGTATCCCCACAGTGTTTGGCCCTTGTCATATCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGACAACAACTTTCTTTCTaGGTTTCCTGGTACCCTAGC +
Preference number: 3 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRQQLSF*VSWYPS
Trigger: GCTAGGGTACCAGGAAACCAAGAAAGAAAGTTGTTG...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACATGAATGTTCAATCATaGTCTGGACCTTGGACTCAA +
Preference number: 3 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHMNVQS*SGPWTQ
Trigger: TTGAGTCCAAGGTCCAGACAATGATTGAACATTCAT...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp ACCGTCTCCCGTACACTGACGAGTATTAGTGGATTCTaGCCTCTAAAATTCAAGACACGGCACCAGCCAAAA +
Preference number: 3 (lower is better)
Translates to: TVSRTLTSISGF*PLKFKTRHQPK
Trigger: TTTTGGCTGGTGCCGTGTCTTGAATTTTAGAGGTCAGAATCCACTAATACTCGTCAGTGTACGGGAGACGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp GTTGTCTGGGTTTGTTTCAGAAATGCTTGTACTTTCTaGGCTGTCTTGCCAGCGCTAGGCATTGACAGCTTC +
Preference number: 3 (lower is better)
Translates to: VVWVCFRNACTF*AVLPALGIDSF
Trigger: GAAGCTGTCAATGCCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAGACAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GATAGAGATCTGACTTTGAAATTAACAGCAGCAGAATaGTGGCGGTGGCAGTGGAGGCAGCGCACATCTTTA +
Preference number: 3 (lower is better)
Translates to: DRDLTLKLTAAE*WRWQWRQRTSL
Trigger: TAAAGATGTGCGCTGCCTCCACTGCCACCGCCATCATTCTGCTGCTGTTAATTTCAAAGTCAGATCTCTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp CTTAGGTTTCAAATCCCAGATGCTACAGAAGGAGAGTaGTGTCTCTTCTTGGATAGGAAAGCCACGGCACAT +
Preference number: 3 (lower is better)
Translates to: LRFQIPDATEGE*CLFLDRKATAH
Trigger: ATGTGCCGTGGCTTTCCTATCCAAGAAGAGACAGCACTCTCCTTCTGTAGCATCTGGGATTTGAAACCTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR-3UTR CAA 90 bp GATCGAGTTCCAAGACAGCCAGGGCTACACAGAGAACCTTATCTTGAAAAATCAAGGATTCTGTCCTGGTaGGTCATGTTTCCCAGTAAG +
Preference number: 3 (lower is better)
Translates to: DRVPRQPGLHREPYLEKSRILSW*VMFPSK
Trigger: CTTACTGGGAAACATGACCAACCAGGACAGAATCCT...TGATTTTTCAAGATAAGGTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCGATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp TGGCAACCTCTGGCCTCACCTTGCCAGAGGTTCTGGTaGAGTGTGTGCCATTTAAACAATATGATTCACAAA +
Preference number: 3 (lower is better)
Translates to: WQPLASPCQRFW*SVCHLNNMIHK
Trigger: TTTGTGAATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGTGAGGCCAGAGGTTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR GCA 72 bp GATCCCATTATAGATGGTTGTGAACCACCATGTGGTTaGTGGGAATTAAACTCAGGGCCTCTAGAACAGTCA +
Preference number: 3 (lower is better)
Translates to: DPIIDGCEPPCG*WELNSGPLEQS
Trigger: TGACTGTTCTAGAGGCCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTCACAACCATCTATAATGGGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CCA 72 bp GAAACTGGAGACTTTGCTAAGTATCCCTTAGAAGGCTaGAGCAGAACAGATCGAGTGCTAGCCAGAATTTCA +
Preference number: 3 (lower is better)
Translates to: ETGDFAKYPLEG*SRTDRVLARIS
Trigger: TGAAATTCTGGCTAGCACTCGATCTGTTCTGCTCCAGCCTTCTAAGGGATACTTAGCAAAGTCTCCAGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR-3UTR CAA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGGACTGTAGAGAGACTTaGTCCTTTTTGGTTTGTTGG +
Preference number: 3 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLDCRET*SFLVCW
Trigger: CCAACAAACCAAAAAGGACAAAGTCTCTCTACAGTC...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 72 bp CTGATTGAGCATATGCACCATGATATTTTTATGTGGTaGGAGCAGCCAGCCCACACAAATCTCCCTGTAATC +
Preference number: 3 (lower is better)
Translates to: LIEHMHHDIFMW*EQPAHTNLPVI
Trigger: GATTACAGGGAGATTTGTGTGGGCTGGCTGCTCTCACCACATAAAAATATCATGGTGCATATGCTCAATCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGTTCATTGATGTGAGTTaGCTTCTCACCCTACTTACT +
Preference number: 3 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLFIDVS*LLTLLT
Trigger: AGTAAGTAGGGTGAGAAGCAAACTCACATCAATGAA...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CCA 72 bp TTAGCTTTTGTTGTTGTTTGTTGTTGTTGTTGCATGTaGTTTTGGTGTTGCACTCGTGCACACCCACGTACA +
Preference number: 3 (lower is better)
Translates to: LAFVVVCCCCCM*FWCCTRAHPRT
Trigger: TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACAAACAACAACAAAAGCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR-3UTR CAA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGTTTGAAAATACATTTTaGAGCTTGTGCAGTGGCTCA +
Preference number: 3 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLFENTF*SLCSGS
Trigger: TGAGCCACTGCACAAGCTCAAAAATGTATTTTCAAA...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR TCA 72 bp AAGAGAGAGAGAGCTGTTTTACAAAACGTGACTGGATaGATGTTCAATCATTGTCTGGACCTTGGACTCAAG +
Preference number: 3 (lower is better)
Translates to: KRERAVLQNVTG*MFNHCLDLGLK
Trigger: CTTGAGTCCAAGGTCCAGACAATGATTGAACATTCATCCAGTCACGTTTTGTAAAACAGCTCTCTCTCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR TCA 72 bp TTCCCAGTAAGAGAGAGAGAGCTGTTTTACAAAACGTaGCTGGATGAATGTTCAATCATTGTCTGGACCTTG +
Preference number: 3 (lower is better)
Translates to: FPVRERELFYKT*LDECSIIVWTL
Trigger: CAAGGTCCAGACAATGATTGAACATTCATCCAGTCACGTTTTGTAAAACAGCTCTCTCTCTCTTACTGGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CCA 72 bp TTTCTCAGCAACCCCCTTAATGCTGGTCCAATCTGGTaGAGTAGTAAGAAAAATCAATGGTTCGTAACAGAA +
Preference number: 3 (lower is better)
Translates to: FLSNPLNAGPIW*SSKKNQWFVTE
Trigger: TTCTGTTACGAACCATTGATTTTTCTTACTACTCCACCAGATTGGACCAGCATTAAGGGGGTTGCTGAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp ATCTTTCTCAGCAACCCCCTTAATGCTGGTCCAATCTaGTGGAGTAGTAAGAAAAATCAATGGTTCGTAACA +
Preference number: 3 (lower is better)
Translates to: IFLSNPLNAGPI*WSSKKNQWFVT
Trigger: TGTTACGAACCATTGATTTTTCTTACTACTCCACCAGATTGGACCAGCATTAAGGGGGTTGCTGAGAAAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CCACAATATACCAGCAATATCGCCAATGTAAAAATATaGCACAGTGCTATAGGCTGTCAGTGCTTACCATTC +
Preference number: 3 (lower is better)
Translates to: PQYTSNIANVKI*HSAIGCQCLPF
Trigger: GAATGGTAAGCACTGACAGCCTATAGCACTGTGCCATATTTTTACATTGGCGATATTGCTGGTATATTGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp AAGAAGCAAAATCATCAGAAGAGCATCAAGTTTGTCTaGAAGATAGATAGGGCTAATACAGCTTTCCCCAGG +
Preference number: 3 (lower is better)
Translates to: KKQNHQKSIKFV*KIDRANTAFPR
Trigger: CCTGGGGAAAGCTGTATTAGCCCTATCTATCTTTCAGACAAACTTGATGCTCTTCTGATGATTTTGCTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp TTTCTCCTCTATGCTGCAGACAAAAGAAAGCTGGTTTaGATTTCTGCAAGGAAGACATACAAAGGACCATCT +
Preference number: 3 (lower is better)
Translates to: FLLYAADKRKLV*ISARKTYKGPS
Trigger: AGATGGTCCTTTGTATGTCTTCCTTGCAGAAATTCAAACCAGCTTTCTTTTGTCTGCAGCATAGAGGAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp GAGAGACTTTGTCCTTTTTGGTTTGTTGGAGTTCATTaGTGTGAGTTTGCTTCTCACCCTACTTACTCTGTA +
Preference number: 3 (lower is better)
Translates to: ERLCPFWFVGVH*CEFASHPTYSV
Trigger: TACAGAGTAAGTAGGGTGAGAAGCAAACTCACATCAATGAACTCCAACAAACCAAAAAGGACAAAGTCTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CCA 72 bp CATCTTACAAAGCAGAATTCACAACCTGGCAGCCACTaGGCAAAATTAGATCTATCTACATGTTCTATTGGT +
Preference number: 3 (lower is better)
Translates to: HLTKQNSQPGSH*AKLDLSTCSIG
Trigger: ACCAATAGAACATGTAGATAGATCTAATTTTGCCCAGTGGCTGCCAGGTTGTGAATTCTGCTTTGTAAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp TTTCATTTCCCATCTTACAAAGCAGAATTCACAACCTaGCAGCCACTGGGCAAAATTAGATCTATCTACATG +
Preference number: 3 (lower is better)
Translates to: FHFPSYKAEFTT*QPLGKIRSIYM
Trigger: CATGTAGATAGATCTAATTTTGCCCAGTGGCTGCCAGGTTGTGAATTCTGCTTTGTAAGATGGGAAATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR TCA 72 bp ACTTTGTCCTTTTTGGTTTGTTGGAGTTCATTGATGTaGGTTTGCTTCTCACCCTACTTACTCTGTATCAGT +
Preference number: 3 (lower is better)
Translates to: TLSFLVCWSSLM*VCFSPYLLCIS
Trigger: ACTGATACAGAGTAAGTAGGGTGAGAAGCAAACTCACATCAATGAACTCCAACAAACCAAAAAGGACAAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR GCA 72 bp AACGTATTCAAAATCATATTAAGGCTATGGGTCATGTaGACACCAGAGAGAGAAAGAAGTATCAGAAGTTCA +
Preference number: 3 (lower is better)
Translates to: NVFKIILRLWVM*TPERERSIRSS
Trigger: TGAACTTCTGATACTTCTTTCTCTCTCTGGTGTGCACATGACCCATAGCCTTAATATGATTTTGAATACGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp CCACTGGGCAAAATTAGATCTATCTACATGTTCTATTaGTCCTGGGTTCATTTAAGTAGTTTCCAAAGCTTA +
Preference number: 3 (lower is better)
Translates to: PLGKIRSIYMFY*SWVHLSSFQSL
Trigger: TAAGCTTTGGAAACTACTTAAATGAACCCAGGACCAATAGAACATGTAGATAGATCTAATTTTGCCCAGTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CCA 72 bp GGCAAAATTAGATCTATCTACATGTTCTATTGGTCCTaGGTTCATTTAAGTAGTTTCCAAAGCTTAATTGCT +
Preference number: 3 (lower is better)
Translates to: GKIRSIYMFYWS*VHLSSFQSLIA
Trigger: AGCAATTAAGCTTTGGAAACTACTTAAATGAACCCAGGACCAATAGAACATGTAGATAGATCTAATTTTGCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAAGCCGCCCGCGGCCACTaGCAGCTGCGAGCCGTTGAG +
Preference number: 4 (lower is better)
Translates to: GLEEDTRHKPQLLTCRREAARGH*QLRAVE
Trigger: CTCAACGGCTCGCAGCTGGCAGTGGCCGCGGGCGGC...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp AGAGAACTGTCCACCCCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGGTCCGCTGTTCCTGCTaGCCGGCCCCACTCCCCTCC +
Preference number: 4 (lower is better)
Translates to: RELSTPPPTKDPHSTLSLVRCSC*PAPLPS
Trigger: GGAGGGGAGTGGGGCCGGCCAGCAGGAACAGCGGAC...CAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGGGGTGGACAGTTCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR GCA 90 bp CCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGAGACATAATTCCAGGGCCGCCCGCGGCCACTaGCAGCTGCGAGCCGTTGAG +
Preference number: 4 (lower is better)
Translates to: PPPTKDPHSTLSLRHNSRAARGH*QLRAVE
Trigger: CTCAACGGCTCGCAGCTGGCAGTGGCCGCGGGCGGC...CCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
3UTR CAA 72 bp GATAGCTGCCGCTCAGCAGGTAGGCAGGTGCTGGCCTaGAAGAAGACACCAGACACAAGCCCCAGCTGCTCA +
Preference number: 4 (lower is better)
Translates to: DSCRSAGRQVLA*KKTPDTSPSCS
Trigger: TGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCCAGCACCTGCCTACCTGCTGAGCGGCAGCTATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGAGACATAATTCCAGGGCGGCCACTGCCAGCTaGGAGCCGTTGAGACAGGCG +
Preference number: 4 (lower is better)
Translates to: PPPTKDPHSTLSLRHNSRAATAS*EPLRQA
Trigger: CGCCTGTCTCAACGGCTCGCAGCTGGCAGTGGCCGC...CCTGGAATTATGTCTCAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR GCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAACGGAAGCCGAAGTTCTaGGGGGCATGGTCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: GLEEDTRHKPQLLTCRRERKPKF*GAWSKD
Trigger: GTCCTTCGACCATGCCCCGCAGAACTTCGGCTTCCG...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp TCTGGAGTGAGGGTGTGTCATTTTGGCTCCAGGAATAACACAGCTTCCCTCTTCGTCCGCTGTTCCTGCTaGCCGGCCCCACTCCCCTCC +
Preference number: 4 (lower is better)
Translates to: SGVRVCHFGSRNNTASLFVRCSC*PAPLPS
Trigger: GGAGGGGAGTGGGGCCGGCCAGCAGGAACAGCGGAC...GAAGAGGGAAGCTGTGTTATTCCTGGAGCCAAAATGACACACCCTCACTCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAATCTGCTGCTGTGGCCTaGGTGCTGACCCAGCACCTC +
Preference number: 4 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKSAAVA*VLTQHL
Trigger: GAGGTGCTGGGTCAGCACCCAGGCCACAGCAGCAGA...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAAGAGCTCTGCTTGGCCTaGCGGAGCTTCTCAGCAATG +
Preference number: 4 (lower is better)
Translates to: GLEEDTRHKPQLLTCRREELCLA*RSFSAM
Trigger: CATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTC...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCGGAAGCCGAAGTTCTaGGGGGCATGGTCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDRKPKF*GAWSKD
Trigger: GTCCTTCGACCATGCCCCGCAGAACTTCGGCTTCCG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAACGGAAGCCGAAGTTCTaGGGGGCATGGTCGAAGGAC +
Preference number: 4 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKRKPKF*GAWSKD
Trigger: GTCCTTCGACCATGCCCCGCAGAACTTCGGCTTCCG...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CAA 72 bp GAAACACTGCTGAAGGCTGGACAAGGGTGCCTTGGTTaGCCCCAGTCGGTGCCACGCCCTGATGTCTCTCTT +
Preference number: 4 (lower is better)
Translates to: ETLLKAGQGCLG*PQSVPRPDVSL
Trigger: AAGAGAGACATCAGGGCGTGGCACCGACTGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CAA 72 bp CCGGAACCGAACCAACCGCTTCCAGCTGGCTCTCCTTaGGCCAACTTTCCCCCTTGGGTCTGGAAATGTGGT +
Preference number: 4 (lower is better)
Translates to: PEPNQPLPAGSP*ANFPPWVWKCG
Trigger: ACCACATTTCCAGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCGGTTCCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp CGAACCAACCGCTTCCAGCTGGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTCCTCTCTGCAGAGGCTaGAATCTTCCCACAAGTCCA +
Preference number: 4 (lower is better)
Translates to: RTNRFQLALLWPTFPLGSPLCRG*NLPTSP
Trigger: TGGACTTGTGGGAAGATTTCAGCCTCTGCAGAGAGG...AGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp ACCATAGCCTGGCCGAGACCCTGTTTTAAGAAGCAAAATCATCAGAAGAGCATCGCAGTCCGCTGTTCCTaGTGGCCGGCCCCACTCCCC +
Preference number: 4 (lower is better)
Translates to: TIAWPRPCFKKQNHQKSIAVRCS*WPAPLP
Trigger: GGGGAGTGGGGCCGGCCAGCAGGAACAGCGGACTGC...GATGCTCTTCTGATGATTTTGCTTCTTAAAACAGGGTCTCGGCCAGGCTATGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GGTAGGTCTGCGCTTCAAGGGCAGGTGAGCTACATTTCTGACTCACCTCTGGGCCCAAAGAATGGTGACTaGCACCTGGTCGTGGCAAGC +
Preference number: 4 (lower is better)
Translates to: GRSALQGQVSYISDSPLGPKNGD*HLVVAS
Trigger: GCTTGCCACGACCAGGTGGCAGTCACCATTCTTTGG...GCCCAGAGGTGAGTCAGAAATGTAGCTCACCTGCCCTTGAAGCGCAGACCTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAAGCGTGTAACAGGGGCTaGAAGGCAGGGGCACTATCA +
Preference number: 4 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKACNRG*KAGALS
Trigger: TGATAGTGCCCCTGCCTTGCAGCCCCTGTTACACGC...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp CACTCCCAACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCAATGCCAAGGGCCCCTaGGGACCAAAGAATGGTGAC +
Preference number: 4 (lower is better)
Translates to: HSQPLSHLPSPITSFWQGNAKGP*GPKNGD
Trigger: GTCACCATTCTTTGGTCCCCAGGGGCCCTTGGCATT...GCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGTTGGGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CCA 90 bp CGAAGGCAGGTGTATCTTAAGAGTTCGAGGCCAGCCTGGACTACAGATCGAGTTTCTGCTGCTGTGGCCTaGGTGCTGACCCAGCACCTC +
Preference number: 4 (lower is better)
Translates to: RRQVYLKSSRPAWTTDRVSAAVA*VLTQHL
Trigger: GAGGTGCTGGGTCAGCACCCAGGCCACAGCAGCAGA...AACTCGATCTGTAGTCCAGGCTGGCCTCGAACTCTTAAGATACACCTGCCTTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTTCTGCTGCTGTGGCCTaGGTGCTGACCCAGCACCTC +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISSAAVA*VLTQHL
Trigger: GAGGTGCTGGGTCAGCACCCAGGCCACAGCAGCAGA...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CGAACCAACCGCTTCCAGCTGGCTCTCCTTTGGCCAACTTTCCCCCTTGGGTCTGGTGCATGTTGCAAATaGCAACATACAGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: RTNRFQLALLWPTFPLGSGACCK*QHTGSG
Trigger: GCCGCTCCCTGTATGTTGCCATTTGCAACATGCACC...AGACCCAAGGGGGAAAGTTGGCCAAAGGAGAGCCAGCTGGAAGCGGTTGGTTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GCACTCTCAGGGACCCCACACTCCACATGCAAAGCTCAGTATCTATCCGAAATGGGGACCAAAGAATGGTaGCTGCCACCTGGTCGTGGC +
Preference number: 4 (lower is better)
Translates to: ALSGTPHSTCKAQYLSEMGTKEW*LPPGRG
Trigger: GCCACGACCAGGTGGCAGTCACCATTCTTTGGTCCC...CATTTCGGATAGATACTGAGCTTTGCATGTGGAGTGTGGGGTCCCTGAGAGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCGAAGTAGACGGCGATaGACTTGCGCAGTGCGGCAG +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISRSRRR*TCAVRQ
Trigger: CTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCG...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAATACGAAGTAGACGGCGATaGACTTGCGCAGTGCGGCAG +
Preference number: 4 (lower is better)
Translates to: LHVPHPAPIPMCVHTQKIRSRRR*TCAVRQ
Trigger: CTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCG...TATTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp AGCCTCATGGAGGTGGGAGCTCTGTCTGCTCAGTCTGGATTCCACAGTGATAATCACCTCCTGCTCTCCTaGGTGCAGATGGGCACAGAG +
Preference number: 4 (lower is better)
Translates to: SLMEVGALSAQSGFHSDNHLLLS*VQMGTE
Trigger: CTCTGTGCCCATCTGCACTCAGGAGAGCAGGAGGTG...ATTATCACTGTGGAATCCAGACTGAGCAGACAGAGCTCCCACCTCCATGAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCACCTCCTGCTCTCCTaGGTGCAGATGGGCACAGAG +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISHLLLS*VQMGTE
Trigger: CTCTGTGCCCATCTGCACTCAGGAGAGCAGGAGGTG...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGCACCTCCTGCTCTCCTaGGTGCAGATGGGCACAGAG +
Preference number: 4 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQHLLLS*VQMGTE
Trigger: CTCTGTGCCCATCTGCACTCAGGAGAGCAGGAGGTG...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp AGAGAACTGTCCACCCCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGCCAAAGAATGGTGACTaGCACCTGGTCGTGGCAAGC +
Preference number: 4 (lower is better)
Translates to: RELSTPPPTKDPHSTLSLPKNGD*HLVVAS
Trigger: GCTTGCCACGACCAGGTGGCAGTCACCATTCTTTGG...CAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGGGGTGGACAGTTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR GCA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAAGGAAGTAGTTCCTTCTaGTGCTGTGGCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKGSSSF*CCGLGA
Trigger: AGCACCCAGGCCACAGCAGCAGAAGGAACTACTTCC...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTAGCAGAGGAAGACCTTaGGCTGAGGCCGGAGCCTGT +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISSRGRP*AEAGAC
Trigger: ACAGGCTCCGGCCTCAGCCCAAGGTCTTCCTCTGCT...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp GGAAATCCCCGGCTCATCTCACCTCCACACCTGACCTaGGGATCTTTCTCAGCAACCCCCTTAATGCTGGTC +
Preference number: 4 (lower is better)
Translates to: GNPRLISPPHLT*GSFSATPLMLV
Trigger: GACCAGCATTAAGGGGGTTGCTGAGAAAGATCCCAAGGTCAGGTGTGGAGGTGAGATGAGCCGGGGATTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTGAGCTCTGCTTGGCCTaGCGGAGCTTCTCAGCAATG +
Preference number: 4 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSELCLA*RSFSAM
Trigger: CATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTC...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGGAGCTCTGCTTGGCCTaGCGGAGCTTCTCAGCAATG +
Preference number: 4 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQELCLA*RSFSAM
Trigger: CATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTC...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp GCACTCTCAGGGACCCCACACTCCACATGCAAAGCTCAGTATCTATCCGAAATGGGGAGCGGCCCGATTTaGTCCGGAAGTAGTTCCTTC +
Preference number: 4 (lower is better)
Translates to: ALSGTPHSTCKAQYLSEMGSGPI*SGSSSF
Trigger: GAAGGAACTACTTCCGGAGCAAATCGGGCCGCTCCC...CATTTCGGATAGATACTGAGCTTTGCATGTGGAGTGTGGGGTCCCTGAGAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTGGGAGCGGCCCGATTTaGTCCGGAAGTAGTTCCTTC +
Preference number: 4 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSGSGPI*SGSSSF
Trigger: GAAGGAACTACTTCCGGAGCAAATCGGGCCGCTCCC...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp GATAAAAGGCAGCAAACACTTCAGCTCCCAGAAGGGCACAATCCCACAGACCCTGGGAGCGGCCCGATTTaGTCCGGAAGTAGTTCCTTC +
Preference number: 4 (lower is better)
Translates to: DKRQQTLQLPEGHNPTDPGSGPI*SGSSSF
Trigger: GAAGGAACTACTTCCGGAGCAAATCGGGCCGCTCCC...AGGGTCTGTGGGATTGTGCCCTTCTGGGAGCTGAAGTGTTTGCTGCCTTTTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp AGAAGCCCAGGAAACACTGCTGAAGGCTGGACAAGGGTGCCTTGGTTTGCCCCATTTAGAATCAGCTGTTaGCACTGTCTGCCCTCCGAC +
Preference number: 4 (lower is better)
Translates to: RSPGNTAEGWTRVPWFAPFRISC*HCLPSD
Trigger: GTCGGAGGGCAGACAGTGCCAACAGCTGATTCTAAA...TGGGGCAAACCAAGGCACCCTTGTCCAGCCTTCAGCAGTGTTTCCTGGGCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACGGTGCATGTTGCAAATaGCAACATACAGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDGACCK*QHTGSG
Trigger: GCCGCTCCCTGTATGTTGCCATTTGCAACATGCACC...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAAAAATTTCTCCAGGACTaGCTCCTGGTAACGCACAGG +
Preference number: 4 (lower is better)
Translates to: GLEEDTRHKPQLLTCRREKFLQD*LLVTHR
Trigger: CCTGTGCGTTACCAGGAGCCAGTCCTGGAGAAATTT...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACCTATCACAGGAGGGCTaGGCCTCAGTGTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHLSQEG*ASVSWS
Trigger: GGACCAAGACACTGAGGCCCAGCCCTCCTGTGATAG...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCACAGGCCCGTGTTCTaGAGAAGAAGGGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDHRPVF*RRRDGN
Trigger: ATTACCATCCCTTCTTCTTCAGAACACGGGCCTGTG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp ACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCAAGGTTACCTGAAGGTGATGTTGTaGAGTCCGCTGTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: TTEPSPQPHNKFLARQGYLKVML*SPLFLL
Trigger: CAGCAGGAACAGCGGACTGCACAACATCACCTTCAG...GTAACCTTGCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR GCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCTTTCCTGGTGGTGTTaGTGTCATCCACCAGCTCAA +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDLSWWC*CHPPAQ
Trigger: TTGAGCTGGTGGATGACAGCAACACCACCAGGAAAG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp GCACTCTCAGGGACCCCACACTCCACATGCAAAGCTCAGTATCTATCCGAAATGCTTCTCAGCAATGGCTaGCACGGCCACCAGGAAGAA +
Preference number: 4 (lower is better)
Translates to: ALSGTPHSTCKAQYLSEMLLSNG*HGHQEE
Trigger: TTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAG...CATTTCGGATAGATACTGAGCTTTGCATGTGGAGTGTGGGGTCCCTGAGAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTTCTCAGCAATGGCTaGCACGGCCACCAGGAAGAA +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISLLSNG*HGHQEE
Trigger: TTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAG...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACGGAAGTAGTTCCTTCTaGTGCTGTGGCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHGSSSF*CCGLGA
Trigger: AGCACCCAGGCCACAGCAGCAGAAGGAACTACTTCC...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTGGAAGTAGTTCCTTCTaGTGCTGTGGCCTGGGTGCT +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISGSSSF*CCGLGA
Trigger: AGCACCCAGGCCACAGCAGCAGAAGGAACTACTTCC...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp AGAGAACTGTCCACCCCACCACCTACAAAAGACCCGCACTCCACACTGTCACTGTTTAGAATCAGCTGTTaGCACTGTCTGCCCTCCGAC +
Preference number: 4 (lower is better)
Translates to: RELSTPPPTKDPHSTLSLFRISC*HCLPSD
Trigger: GTCGGAGGGCAGACAGTGCCAACAGCTGATTCTAAA...CAGTGACAGTGTGGAGTGCGGGTCTTTTGTAGGTGGTGGGGTGGACAGTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CCA 90 bp CGAAGGCAGGTGTATCTTAAGAGTTCGAGGCCAGCCTGGACTACAGATCGAGTTAAGTTCTGCGGGGCATaGTCGAAGGACACGTGCATG +
Preference number: 4 (lower is better)
Translates to: RRQVYLKSSRPAWTTDRVKFCGA*SKDTCM
Trigger: CATGCACGTGTCCTTCGACCATGCCCCGCAGAACTT...AACTCGATCTGTAGTCCAGGCTGGCCTCGAACTCTTAAGATACACCTGCCTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CCAGTCCTCCCCACGCCTGAGGCCCTCCTCCATAACATGGAAGCTTCCACAGTATCTGGCCATCTTTATTaGAGTAGCAGAGGAAGACCT +
Preference number: 4 (lower is better)
Translates to: PVLPTPEALLHNMEASTVSGHLY*SSRGRP
Trigger: AGGTCTTCCTCTGCTACTCCAATAAAGATGGCCAGA...TACTGTGGAAGCTTCCATGTTATGGAGGAGGGCCTCAGGCGTGGGGAGGACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACCAGATGAGCTCTGCTTaGCCTGACGGAGCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHQMSSA*PDGASQ
Trigger: CTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTG...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCAGAGCTCAGGAAGGTaGTCCATGAGCTTGTACTTG +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDQSSGR*SMSLYL
Trigger: CAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CGAAGGCAGGTGTATCTTAAGAGTTCGAGGCCAGCCTGGACTACAGATCGAGTTTCTCCTGAGTGCAGATaGGCACAGAGCTCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: RRQVYLKSSRPAWTTDRVSPECR*AQSSGR
Trigger: CCTTCCTGAGCTCTGTGCCCATCTGCACTCAGGAGA...AACTCGATCTGTAGTCCAGGCTGGCCTCGAACTCTTAAGATACACCTGCCTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAATATCTCCTGAGTGCAGATaGGCACAGAGCTCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: LHVPHPAPIPMCVHTQKISPECR*AQSSGR
Trigger: CCTTCCTGAGCTCTGTGCCCATCTGCACTCAGGAGA...TATTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp AGCTTGCCCAGAGCAGCTGCTCTGTTCTCTGCTAGAGAACATGTGGAGCACGCTCGCACAGGGGGATGTTaGAAGGGTATAAACTGCTTC +
Preference number: 4 (lower is better)
Translates to: SLPRAAALFSAREHVEHARTGGC*KGINCF
Trigger: GAAGCAGTTTATACCCTTCCAACATCCCCCTGTGCG...AGCGTGCTCCACATGTTCTCTAGCAGAGAACAGAGCAGCTGCTCTGGGCAAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCGCACAGGGGGATGTTaGAAGGGTATAAACTGCTTC +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDRTGGC*KGINCF
Trigger: GAAGCAGTTTATACCCTTCCAACATCCCCCTGTGCG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAAAAATTTCTCCAGGACTaGCTCCTGGTAACGCACAGG +
Preference number: 4 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKKFLQD*LLVTHR
Trigger: CCTGTGCGTTACCAGGAGCCAGTCCTGGAGAAATTT...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
53% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CAA 72 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTaGCTTCACGCCTTCCACTGTGGGTACGTTGTCTGG +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTG*LHAFHCGYVVW
Trigger: CCAGACAACGTACCCACAGTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCCTCTCTGCAGAGGCTaGAATCTTCCCACAAGTCCA +
Preference number: 4 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISPLCRG*NLPTSP
Trigger: TGGACTTGTGGGAAGATTTCAGCCTCTGCAGAGAGG...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCGAAGTAGACGGCGATaGACTTGCGCAGTGCGGCAG +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGRSRRR*TCAVRQ
Trigger: CTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACCTGAAGGTGATGTTGTaGAGTCCGCTGTTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHLKVML*SPLFLL
Trigger: CAGCAGGAACAGCGGACTGCACAACATCACCTTCAG...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CTGGGTTTGTTTCAGAAATGCTTGTACTTTCTGAGCTGTCTTGCCAGCGCTAGGGCTGTTGGCACTGTCTaGCCTCCGACTTCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: LGLFQKCLYFLSCLASARAVGTV*PPTSAP
Trigger: AGGAGCTGAAGTCGGAGGGCAGACAGTGCCAACAGC...CCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAATATGGTCGAAGGACACGTaGATGTCAGAACCATGCTGG +
Preference number: 4 (lower is better)
Translates to: LHVPHPAPIPMCVHTQKIWSKDT*MSEPCW
Trigger: CCAGCATGGTTCTGACATGCACGTGTCCTTCGACCA...TATTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp TGTTGTTGTTGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACACCCACGTACAATGGCCCATTCTCTCTaGCCCTCTCTGCAGAGGCTG +
Preference number: 4 (lower is better)
Translates to: CCCCCMWFWCCTRAHPRTMAHSL*PSLQRL
Trigger: CAGCCTCTGCAGAGAGGGGCAGAGAGAATGGGCCAT...TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCTTCTCAGCAATGGCTaGCACGGCCACCAGGAAGAA +
Preference number: 4 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSLLSNG*HGHQEE
Trigger: TTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAG...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCTCCTGCTCTCCTGAGTaGAGATGGGCACAGAGCTCA +
Preference number: 4 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSSCSPE*RWAQSS
Trigger: TGAGCTCTGTGCCCATCTGCACTCAGGAGAGCAGGA...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp CTGGGTTTGTTTCAGAAATGCTTGTACTTTCTGAGCTGTCTTGCCAGCGCTAGGGCGTGTAACAGGGGCTaGAAGGCAGGGGCACTATCA +
Preference number: 4 (lower is better)
Translates to: LGLFQKCLYFLSCLASARACNRG*KAGALS
Trigger: TGATAGTGCCCCTGCCTTGCAGCCCCTGTTACACGC...CCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTGCATCTCTGAGGGACTaGCAGCTTTCACTGCGTGTA +
Preference number: 4 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSASLRD*QLSLRV
Trigger: TACACGCAGTGAAAGCTGGCAGTCCCTCAGAGATGC...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAACTGCCACCTGGTCGTaGCAAGCGTACTGGCTGATG +
Preference number: 4 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRTATWS*QAYWLM
Trigger: CATCAGCCAGTACGCTTGCCACGACCAGGTGGCAGT...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTAAGTTCTGCGGGGCATaGTCGAAGGACACGTGCATG +
Preference number: 4 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAKFCGA*SKDTCM
Trigger: CATGCACGTGTCCTTCGACCATGCCCCGCAGAACTT...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACTTTGGAGGAGGCAGCTaGTTGTCTCTGTATTCTGGT +
Preference number: 4 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDFGGGS*LSLYSG
Trigger: ACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAA...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp ACCATAGCCTGGCCGAGACCCTGTTTTAAGAAGCAAAATCATCAGAAGAGCATCAGCAGAGGAAGACCTTaGGCTGAGGCCGGAGCCTGT +
Preference number: 4 (lower is better)
Translates to: TIAWPRPCFKKQNHQKSISRGRP*AEAGAC
Trigger: ACAGGCTCCGGCCTCAGCCCAAGGTCTTCCTCTGCT...GATGCTCTTCTGATGATTTTGCTTCTTAAAACAGGGTCTCGGCCAGGCTATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACCGTGGATCTTCTGAATaGCCCATTCTCTCTGCCCCT +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHRGSSE*PILSAP
Trigger: AGGGGCAGAGAGAATGGGCCATTCAGAAGATCCACG...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTTCGTCAGTGTGGCTGTaGCAACCATGTTCTCTGGAC +
Preference number: 4 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSSSVWL*QPCSLD
Trigger: GTCCAGAGAACATGGTTGCCACAGCCACACTGACGA...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACCACAGGCCCGTGTTCTaGAGAAGAAGGGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHHRPVF*RRRDGN
Trigger: ATTACCATCCCTTCTTCTTCAGAACACGGGCCTGTG...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGCAGAACCATGCTGGCTaGTATTCAGGTTTCGAGGCT +
Preference number: 4 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQQNHAG*YSGFEA
Trigger: AGCCTCGAAACCTGAATATCAGCCAGCATGGTTCTG...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp TCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGACTTCACCACATACTaGGCAGCTTTCCTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: SGLQRRWKDKRQQTLQLPDFTTY*AAFLVV
Trigger: CACCACCAGGAAAGCTGCTCAGTATGTGGTGAAGTC...TGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp CCAGTTTCCTCATCTGAGTTCATGCATCGAGCCTGGGCCTGGGATCCAGTGAAGTGGACCACGTTCATGTaGTTCTGGCCATCTTTATTG +
Preference number: 4 (lower is better)
Translates to: PVSSSEFMHRAWAWDPVKWTTFM*FWPSLL
Trigger: CAATAAAGATGGCCAGAATCACATGAACGTGGTCCA...CTTCACTGGATCCCAGGCCCAGGCTCGATGCATGAACTCAGATGAGGAAACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTGACTCGTGGATCTTCTaGATGGCCCATTCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQADSWIF*MAHSLC
Trigger: GCAGAGAGAATGGGCCATTCAGAAGATCCACGAGTC...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGGCTGTTGGCACTGTCTaGCCTCCGACTTCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLAVGTV*PPTSAP
Trigger: AGGAGCTGAAGTCGGAGGGCAGACAGTGCCAACAGC...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR GCA 90 bp CTGGGTTTGTTTCAGAAATGCTTGTACTTTCTGAGCTGTCTTGCCAGCGCTAGGTCTGTATTCTGGTCCTaGCTGCAAGTCCTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: LGLFQKCLYFLSCLASARSVFWS*LQVLRL
Trigger: CAGGCGGAGGACTTGCAGGCAGGACCAGAATACAGA...CCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGATCTGTATTCTGGTCCTaGCTGCAAGTCCTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRSVFWS*LQVLRL
Trigger: CAGGCGGAGGACTTGCAGGCAGGACCAGAATACAGA...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGATCCTGCTCTCCTGAGTaGAGATGGGCACAGAGCTCA +
Preference number: 4 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRSCSPE*RWAQSS
Trigger: TGAGCTCTGTGCCCATCTGCACTCAGGAGAGCAGGA...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCGCGTGTAACAGGGGCTaGAAGGCAGGGGCACTATCA +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGACNRG*KAGALS
Trigger: TGATAGTGCCCCTGCCTTGCAGCCCCTGTTACACGC...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTGCATCTCTGAGGGACTaGCAGCTTTCACTGCGTGTA +
Preference number: 4 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAASLRD*QLSLRV
Trigger: TACACGCAGTGAAAGCTGGCAGTCCCTCAGAGATGC...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp AATAAAGCACAAGACAAGGACTGCCACCAAGGAAGCAACGGGTGGTGTTCTGATAATGCCAAGGGCCCCTaGGGACCAAAGAATGGTGAC +
Preference number: 4 (lower is better)
Translates to: NKAQDKDCHQGSNGWCSDNAKGP*GPKNGD
Trigger: GTCACCATTCTTTGGTCCCCAGGGGCCCTTGGCATT...ATCAGAACACCACCCGTTGCTTCCTTGGTGGCAGTCCTTGTCTTGTGCTTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACACTGAGCAGCTTTCCTaGTGGTGTTGCTGTCATCCA +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHTEQLS*WCCCHP
Trigger: TGGATGACAGCAACACCACCAGGAAAGCTGCTCAGT...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAATAACTGAGCAGCTTTCCTaGTGGTGTTGCTGTCATCCA +
Preference number: 4 (lower is better)
Translates to: LHVPHPAPIPMCVHTQKITEQLS*WCCCHP
Trigger: TGGATGACAGCAACACCACCAGGAAAGCTGCTCAGT...TATTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAAGTCACTCTCTGGCCCTaGTTTGCTTATGACATCATT +
Preference number: 4 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKVTLWP*FAYDII
Trigger: AATGATGTCATAAGCAAACCAGGGCCAGAGAGTGAC...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGAACCATGCTGGCTaGTATTCAGGTTTCGAGGCT +
Preference number: 4 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAQNHAG*YSGFEA
Trigger: AGCCTCGAAACCTGAATATCAGCCAGCATGGTTCTG...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp TGTTGTTGTTGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACACCCACGTACAGACTTCACCACATACTaGGCAGCTTTCCTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: CCCCCMWFWCCTRAHPRTDFTTY*AAFLVV
Trigger: CACCACCAGGAAAGCTGCTCAGTATGTGGTGAAGTC...TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGGCGGCCACTGCCAGCTaGGAGCCGTTGAGACAGGCG +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLAATAS*EPLRQA
Trigger: CGCCTGTCTCAACGGCTCGCAGCTGGCAGTGGCCGC...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGACTTTCCTGGTGGTGTTaGTGTCATCCACCAGCTCAA +
Preference number: 4 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRLSWWC*CHPPAQ
Trigger: TTGAGCTGGTGGATGACAGCAACACCACCAGGAAAG...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCATGGCCCATTCTCTCTaGCCCTCTCTGCAGAGGCTG +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSMAHSL*PSLQRL
Trigger: CAGCCTCTGCAGAGAGGGGCAGAGAGAATGGGCCAT...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp CAGCATAGCCTGGACTGTAGAGAGACTTTGTCCTTTTTGGTTTGTTGGAGTTCAACTGCCACCTGGTCGTaGCAAGCGTACTGGCTGATG +
Preference number: 4 (lower is better)
Translates to: QHSLDCRETLSFLVCWSSTATWS*QAYWLM
Trigger: CATCAGCCAGTACGCTTGCCACGACCAGGTGGCAGT...TGAACTCCAACAAACCAAAAAGGACAAAGTCTCTCTACAGTCCAGGCTATGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTATGGTGACTGCCACCTaGTCGTGGCAAGCGTACTGG +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPMVTAT*SWQAYW
Trigger: CCAGTACGCTTGCCACGACCAGGTGGCAGTCACCAT...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCAGATGAGCTCTGCTTaGCCTGACGGAGCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGQMSSA*PDGASQ
Trigger: CTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGAGCTCAGGAAGGTaGTCCATGAGCTTGTACTTG +
Preference number: 4 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSQSSGR*SMSLYL
Trigger: CAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTG...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTAAATTTCTCCAGGACTaGCTCCTGGTAACGCACAGG +
Preference number: 4 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAKFLQD*LLVTHR
Trigger: CCTGTGCGTTACCAGGAGCCAGTCCTGGAGAAATTT...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CATGAGGAAGCCAAAGAAGACAACTTTGGGACAGGGTTGCTTCACGCCTTCCACACAGAAGTCACTCTCTaGCCCTGGTTTGCTTATGAC +
Preference number: 4 (lower is better)
Translates to: HEEAKEDNFGTGLLHAFHTEVTL*PWFAYD
Trigger: GTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGT...GTGGAAGGCGTGAAGCAACCCTGTCCCAAAGTTGTCTTCTTTGGCTTCCTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTCTATCACAGGAGGGCTaGGCCTCAGTGTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPLSQEG*ASVSWS
Trigger: GGACCAAGACACTGAGGCCCAGCCCTCCTGTGATAG...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCCTATCACAGGAGGGCTaGGCCTCAGTGTCTTGGTCC +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSLSQEG*ASVSWS
Trigger: GGACCAAGACACTGAGGCCCAGCCCTCCTGTGATAG...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CAA 72 bp AACAAGATGGTCCAGCCCCACAGGATTCTGTCCTGGTaGGTCATGTTTCCCAGTAAGAGAGAGAGAGCTGTT +
Preference number: 4 (lower is better)
Translates to: NKMVQPHRILSW*VMFPSKRERAV
Trigger: AACAGCTCTCTCTCTCTTACTGGGAAACATGACCAACCAGGACAGAATCCTGTGGGGCTGGACCATCTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp CACACAAATCTCCCTGTAATCCTAACTGGAGCATGGTaGTCAGGCAACACCCATGTGAACAAGGCATGGGTG +
Preference number: 4 (lower is better)
Translates to: HTNLPVILTGAW*SGNTHVNKAWV
Trigger: CACCCATGCCTTGTTCACATGGGTGTTGCCTGACAACCATGCTCCAGTTAGGATTACAGGGAGATTTGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCTGGTCGAAGGACACGTaGATGTCAGAACCATGCTGG +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGWSKDT*MSEPCW
Trigger: CCAGCATGGTTCTGACATGCACGTGTCCTTCGACCA...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCTCTGTATTCTGGTCCTaGCTGCAAGTCCTCCGCCTG +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSSVFWS*LQVLRL
Trigger: CAGGCGGAGGACTTGCAGGCAGGACCAGAATACAGA...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAATCATCAATAAACTGGTaGATGTTGCAAATGGCAACA +
Preference number: 4 (lower is better)
Translates to: GLEEDTRHKPQLLTCRRESSINW*MLQMAT
Trigger: TGTTGCCATTTGCAACATGCACCAGTTTATTGATGA...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTTTTGGAGGAGGCAGCTaGTTGTCTCTGTATTCTGGT +
Preference number: 4 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAFGGGS*LSLYSG
Trigger: ACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAA...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp TCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCATTTGGAGGAGGCAGCTaGTTGTCTCTGTATTCTGGT +
Preference number: 4 (lower is better)
Translates to: SGLQRRWKDKRQQTLQLPFGGGS*LSLYSG
Trigger: ACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAA...TGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCGTGGATCTTCTGAATaGCCCATTCTCTCTGCCCCT +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGRGSSE*PILSAP
Trigger: AGGGGCAGAGAGAATGGGCCATTCAGAAGATCCACG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCCAGATGAGCTCTGCTTaGCCTGACGGAGCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSQMSSA*PDGASQ
Trigger: CTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTG...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTGGCAACCATGTTCTCTaGACACCCCAGAGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPGNHVL*TPQRQG
Trigger: TCCTTGCCTCTGGGGTGTCCAGAGAACATGGTTGCC...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp CTGTGGGTACGTTGTCTGGGTTTGTTTCAGAAATGCTaGTACTTTCTGAGCTGTCTTGCCAGCGCTAGGCAT +
Preference number: 4 (lower is better)
Translates to: LWVRCLGLFQKC*YFLSCLASARH
Trigger: ATGCCTAGCGCTGGCAAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAGACAACGTACCCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGTCAGCTCCTCCAGGATaGCTCGGAATCCTTTTAGGA +
Preference number: 4 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLSAPPG*LGILLG
Trigger: TCCTAAAAGGATTCCGAGTCATCCTGGAGGAGCTGA...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR TCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGAGGAAGACCTTGGGCTaGGGCCGGAGCCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLRKTLG*GRSLSL
Trigger: CAGAGACAGGCTCCGGCCTCAGCCCAAGGTCTTCCT...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCCCTCTCTGCAGAGGCTaGAATCTTCCCACAAGTCCA +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSPLCRG*NLPTSP
Trigger: TGGACTTGTGGGAAGATTTCAGCCTCTGCAGAGAGG...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACGCCCTGGTTTGCTTATaGCATCATTTAAAACCAAGC +
Preference number: 4 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHALVCL*HHLKPS
Trigger: GCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGC...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp GCACTCTCAGGGACCCCACACTCCACATGCAAAGCTCAGTATCTATCCGAAATGAATGATATAGTCCCCTaGAGAAACGTTTTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: ALSGTPHSTCKAQYLSEMNDIVP*RNVLEE
Trigger: CTCCTCCAAAACGTTTCTCCAGGGGACTATATCATT...CATTTCGGATAGATACTGAGCTTTGCATGTGGAGTGTGGGGTCCCTGAGAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGAATGATATAGTCCCCTaGAGAAACGTTTTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQNDIVP*RNVLEE
Trigger: CTCCTCCAAAACGTTTCTCCAGGGGACTATATCATT...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp TCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCATCTGGCCATCTTTATTaGAGTAGCAGAGGAAGACCT +
Preference number: 4 (lower is better)
Translates to: SGLQRRWKDKRQQTLQLPSGHLY*SSRGRP
Trigger: AGGTCTTCCTCTGCTACTCCAATAAAGATGGCCAGA...TGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCAGAGCTCAGGAAGGTaGTCCATGAGCTTGTACTTG +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGQSSGR*SMSLYL
Trigger: CAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCGGTGCATGTTGCAAATaGCAACATACAGGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSGACCK*QHTGSG
Trigger: GCCGCTCCCTGTATGTTGCCATTTGCAACATGCACC...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAACAGAAGTCACTCTCTaGCCCTGGTTTGCTTATGAC +
Preference number: 4 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRTEVTL*PWFAYD
Trigger: GTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGT...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCTGCAGTTCGTCAGTGTaGCTGTGGCAACCATGTTCT +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGCSSSV*LWQPCS
Trigger: AGAACATGGTTGCCACAGCCACACTGACGAACTGCA...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CTCTGTATCAGTACCTGGTGTGTTTGTAATCACTCAAAAGAAATCACTCCTTTAGGGACCAAAGAATGGTaGCTGCCACCTGGTCGTGGC +
Preference number: 4 (lower is better)
Translates to: LCISTWCVCNHSKEITPLGTKEW*LPPGRG
Trigger: GCCACGACCAGGTGGCAGTCACCATTCTTTGGTCCC...TAAAGGAGTGATTTCTTTTGAGTGATTACAAACACACCAGGTACTGATACAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR TCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTTCAGCTCCTCCAGGATaGCTCGGAATCCTTTTAGGA +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPSAPPG*LGILLG
Trigger: TCCTAAAAGGATTCCGAGTCATCCTGGAGGAGCTGA...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GATCGAGTTCCAAGACAGCCAGGGCTACACAGAGAACCTTATCTTGAAAAATCACAGAACCATGCTGGCTaGTATTCAGGTTTCGAGGCT +
Preference number: 4 (lower is better)
Translates to: DRVPRQPGLHREPYLEKSQNHAG*YSGFEA
Trigger: AGCCTCGAAACCTGAATATCAGCCAGCATGGTTCTG...TGATTTTTCAAGATAAGGTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp CGTTATATACATCTAATTAAGGTACAGGATAGGAAGAGATGGTTTACCTTTGGAAGGAAGACCTTGGGCTaGGGCCGGAGCCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: RYIHLIKVQDRKRWFTFGRKTLG*GRSLSL
Trigger: CAGAGACAGGCTCCGGCCTCAGCCCAAGGTCTTCCT...TCCAAAGGTAAACCATCTCTTCCTATCCTGTACCTTAATTAGATGTATATAACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp TACCAGAACAACCATTTCTGCAGTTCACTATTCCTGTTACTGGAATTCATATTAAGGAAGACCTTGGGCTaGGGCCGGAGCCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: YQNNHFCSSLFLLLEFILRKTLG*GRSLSL
Trigger: CAGAGACAGGCTCCGGCCTCAGCCCAAGGTCTTCCT...TAATATGAATTCCAGTAACAGGAATAGTGAACTGCAGAAATGGTTGTTCTGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp TCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCACTACAAAGTACTTCATaGCTTTGGAGCACACGACAA +
Preference number: 4 (lower is better)
Translates to: SGLQRRWKDKRQQTLQLPLQSTS*LWSTRQ
Trigger: TTGTCGTGTGCTCCAAAGGCATGAAGTACTTTGTAG...TGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp ACCTTGCCAGAGGTTCTGGTGAAGTGTGTGCCATTTAAACAATATGATTCACAATCCTGCTCTCCTGAGTaGAGATGGGCACAGAGCTCA +
Preference number: 4 (lower is better)
Translates to: TLPEVLVKCVPFKQYDSQSCSPE*RWAQSS
Trigger: TGAGCTCTGTGCCCATCTGCACTCAGGAGAGCAGGA...TTGTGAATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR GCA 90 bp CCAACACATGCATTTAGTATTCCAATCTTTTCAGAGTTAGGAGACTGCCAACCCGCATCTCTGAGGGACTaGCAGCTTTCACTGCGTGTA +
Preference number: 4 (lower is better)
Translates to: PTHAFSIPIFSELGDCQPASLRD*QLSLRV
Trigger: TACACGCAGTGAAAGCTGGCAGTCCCTCAGAGATGC...GGGTTGGCAGTCTCCTAACTCTGAAAAGATTGGAATACTAAATGCATGTGTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp GGCACAATCCCACAGACCCTTATCCAACACATGCATTTAGTATTCCAATCTTTTAAGTTCTGCGGGGCATaGTCGAAGGACACGTGCATG +
Preference number: 4 (lower is better)
Translates to: GTIPQTLIQHMHLVFQSFKFCGA*SKDTCM
Trigger: CATGCACGTGTCCTTCGACCATGCCCCGCAGAACTT...AAAAGATTGGAATACTAAATGCATGTGTTGGATAAGGGTCTGTGGGATTGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp TGTTGTTGTTGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACACCCACGTACAGTCACTCTCTGGCCCTaGTTTGCTTATGACATCATT +
Preference number: 4 (lower is better)
Translates to: CCCCCMWFWCCTRAHPRTVTLWP*FAYDII
Trigger: AATGATGTCATAAGCAAACCAGGGCCAGAGAGTGAC...TGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGTCACTCTCTGGCCCTaGTTTGCTTATGACATCATT +
Preference number: 4 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRVTLWP*FAYDII
Trigger: AATGATGTCATAAGCAAACCAGGGCCAGAGAGTGAC...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTTGCAGTTCGTCAGTGTaGCTGTGGCAACCATGTTCT +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPCSSSV*LWQPCS
Trigger: AGAACATGGTTGCCACAGCCACACTGACGAACTGCA...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp GCTTCACGCCTTCCACTGTGGGTACGTTGTCTGGGTTaGTTTCAGAAATGCTTGTACTTTCTGAGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: ASRLPLWVRCLG*FQKCLYFLSCL
Trigger: AAGACAGCTCAGAAAGTACAAGCATTTCTGAAACAAACCCAGACAACGTACCCACAGTGGAAGGCGTGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR TCA 90 bp GGCACAATCCCACAGACCCTTATCCAACACATGCATTTAGTATTCCAATCTTTTGACTCGTGGATCTTCTaGATGGCCCATTCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: GTIPQTLIQHMHLVFQSFDSWIF*MAHSLC
Trigger: GCAGAGAGAATGGGCCATTCAGAAGATCCACGAGTC...AAAAGATTGGAATACTAAATGCATGTGTTGGATAAGGGTCTGTGGGATTGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCCCTGGTTTGCTTATaGCATCATTTAAAACCAAGC +
Preference number: 4 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRALVCL*HHLKPS
Trigger: GCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGC...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp CCAACACATGCATTTAGTATTCCAATCTTTTCAGAGTTAGGAGACTGCCAACCCCTTTCCTGGTGGTGTTaGTGTCATCCACCAGCTCAA +
Preference number: 4 (lower is better)
Translates to: PTHAFSIPIFSELGDCQPLSWWC*CHPPAQ
Trigger: TTGAGCTGGTGGATGACAGCAACACCACCAGGAAAG...GGGTTGGCAGTCTCCTAACTCTGAAAAGATTGGAATACTAAATGCATGTGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGATGGCCCATTCTCTCTaGCCCTCTCTGCAGAGGCTG +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLMAHSL*PSLQRL
Trigger: CAGCCTCTGCAGAGAGGGGCAGAGAGAATGGGCCAT...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACTCATCAATAAACTGGTaGATGTTGCAAATGGCAACA +
Preference number: 4 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHSSINW*MLQMAT
Trigger: TGTTGCCATTTGCAACATGCACCAGTTTATTGATGA...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp TACCAGAACAACCATTTCTGCAGTTCACTATTCCTGTTACTGGAATTCATATTAAGCAGAGGAAGACCTTaGGCTGAGGCCGGAGCCTGT +
Preference number: 4 (lower is better)
Translates to: YQNNHFCSSLFLLLEFILSRGRP*AEAGAC
Trigger: ACAGGCTCCGGCCTCAGCCCAAGGTCTTCCTCTGCT...TAATATGAATTCCAGTAACAGGAATAGTGAACTGCAGAAATGGTTGTTCTGGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp GGCACAATCCCACAGACCCTTATCCAACACATGCATTTAGTATTCCAATCTTTTCACAGGCCCGTGTTCTaGAGAAGAAGGGATGGTAAT +
Preference number: 4 (lower is better)
Translates to: GTIPQTLIQHMHLVFQSFHRPVF*RRRDGN
Trigger: ATTACCATCCCTTCTTCTTCAGAACACGGGCCTGTG...AAAAGATTGGAATACTAAATGCATGTGTTGGATAAGGGTCTGTGGGATTGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCTACAAAGTACTTCATaGCTTTGGAGCACACGACAA +
Preference number: 4 (lower is better)
Translates to: PQSILSLSSQSSSEARAGLQSTS*LWSTRQ
Trigger: TTGTCGTGTGCTCCAAAGGCATGAAGTACTTTGTAG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp AATAAAGCACAAGACAAGGACTGCCACCAAGGAAGCAACGGGTGGTGTTCTGATTCCTCATCAATAAACTaGTGCATGTTGCAAATGGCA +
Preference number: 4 (lower is better)
Translates to: NKAQDKDCHQGSNGWCSDSSSIN*CMLQMA
Trigger: TGCCATTTGCAACATGCACCAGTTTATTGATGAGGA...ATCAGAACACCACCCGTTGCTTCCTTGGTGGCAGTCCTTGTCTTGTGCTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGGGCAACCATGTTCTCTaGACACCCCAGAGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLGNHVL*TPQRQG
Trigger: TCCTTGCCTCTGGGGTGTCCAGAGAACATGGTTGCC...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp TGTAAGGATGCCGAGAGGGCTTTTCCACAAAGCATTTaGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGA +
Preference number: 4 (lower is better)
Translates to: CKDAERAFPQSI*SLSSQSSSEAR
Trigger: TCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGGAAAAGCCCTCTCGGCATCCTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp TTTTGTTGTTGTTTGTTGTTGTTGTTGCATGTGGTTTaGGTGTTGCACTCGTGCACACCCACGTACACACAC +
Preference number: 4 (lower is better)
Translates to: FCCCLLLLLHVV*VLHSCTPTYTH
Trigger: GTGTGTGTACGTGGGTGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACAAACAACAACAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
3UTR CAA 72 bp TGCAGCCCTGCCTATGCAAGTAAAACTGACCTCAAGTaGACAGCAATTCTCCTGCTTTTCTCTCCTGAATAT +
Preference number: 4 (lower is better)
Translates to: CSPAYASKTDLK*TAILLLFSPEY
Trigger: ATATTCAGGAGAGAAAAGCAGGAGAATTGCTGTCAACTTGAGGTCAGTTTTACTTGCATAGGCAGGGCTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR TCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCGCCCTGGTTTGCTTATaGCATCATTTAAAACCAAGC +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSALVCL*HHLKPS
Trigger: GCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGC...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGTGGTCGAAGGACACGTaGATGTCAGAACCATGCTGG +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLWSKDT*MSEPCW
Trigger: CCAGCATGGTTCTGACATGCACGTGTCCTTCGACCA...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTAATGATATAGTCCCCTaGAGAAACGTTTTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPNDIVP*RNVLEE
Trigger: CTCCTCCAAAACGTTTCTCCAGGGGACTATATCATT...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp CGTTATATACATCTAATTAAGGTACAGGATAGGAAGAGATGGTTTACCTTTGGATCTCCTGAGTGCAGATaGGCACAGAGCTCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: RYIHLIKVQDRKRWFTFGSPECR*AQSSGR
Trigger: CCTTCCTGAGCTCTGTGCCCATCTGCACTCAGGAGA...TCCAAAGGTAAACCATCTCTTCCTATCCTGTACCTTAATTAGATGTATATAACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp GGCACAATCCCACAGACCCTTATCCAACACATGCATTTAGTATTCCAATCTTTTACAGAAGTCACTCTCTaGCCCTGGTTTGCTTATGAC +
Preference number: 4 (lower is better)
Translates to: GTIPQTLIQHMHLVFQSFTEVTL*PWFAYD
Trigger: GTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGT...AAAAGATTGGAATACTAAATGCATGTGTTGGATAAGGGTCTGTGGGATTGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR TCA 90 bp CGTTATATACATCTAATTAAGGTACAGGATAGGAAGAGATGGTTTACCTTTGGAGACTTCACCACATACTaGGCAGCTTTCCTGGTGGTG +
Preference number: 4 (lower is better)
Translates to: RYIHLIKVQDRKRWFTFGDFTTY*AAFLVV
Trigger: CACCACCAGGAAAGCTGCTCAGTATGTGGTGAAGTC...TCCAAAGGTAAACCATCTCTTCCTATCCTGTACCTTAATTAGATGTATATAACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CGTTATATACATCTAATTAAGGTACAGGATAGGAAGAGATGGTTTACCTTTGGAGACTCGTGGATCTTCTaGATGGCCCATTCTCTCTGC +
Preference number: 4 (lower is better)
Translates to: RYIHLIKVQDRKRWFTFGDSWIF*MAHSLC
Trigger: GCAGAGAGAATGGGCCATTCAGAAGATCCACGAGTC...TCCAAAGGTAAACCATCTCTTCCTATCCTGTACCTTAATTAGATGTATATAACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp TACCAGAACAACCATTTCTGCAGTTCACTATTCCTGTTACTGGAATTCATATTACGTGGATCTTCTGAATaGCCCATTCTCTCTGCCCCT +
Preference number: 4 (lower is better)
Translates to: YQNNHFCSSLFLLLEFILRGSSE*PILSAP
Trigger: AGGGGCAGAGAGAATGGGCCATTCAGAAGATCCACG...TAATATGAATTCCAGTAACAGGAATAGTGAACTGCAGAAATGGTTGTTCTGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTTCCTCATCAATAAACTaGTGCATGTTGCAAATGGCA +
Preference number: 4 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPSSSIN*CMLQMA
Trigger: TGCCATTTGCAACATGCACCAGTTTATTGATGAGGA...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp ATACGGTTTAATAGACATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCTCCTCATCAATAAACTaGTGCATGTTGCAAATGGCA +
Preference number: 4 (lower is better)
Translates to: IRFNRHLGFKGGGKIKGSSSSIN*CMLQMA
Trigger: TGCCATTTGCAACATGCACCAGTTTATTGATGAGGA...GCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATGTCTATTAAACCGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CAA 72 bp GTCCTTTTTGGTTTGTTGGAGTTCATTGATGTGAGTTaGCTTCTCACCCTACTTACTCTGTATCAGTACCTG +
Preference number: 4 (lower is better)
Translates to: VLFGLLEFIDVS*LLTLLTLYQYL
Trigger: CAGGTACTGATACAGAGTAAGTAGGGTGAGAAGCAAACTCACATCAATGAACTCCAACAAACCAAAAAGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR TCA 90 bp ACCTTGCCAGAGGTTCTGGTGAAGTGTGTGCCATTTAAACAATATGATTCACAAATATTCAGGAAAGGCTaGGATTCCATTCCAGTCCTT +
Preference number: 4 (lower is better)
Translates to: TLPEVLVKCVPFKQYDSQIFRKG*DSIPVL
Trigger: AAGGACTGGAATGGAATCTCAGCCTTTCCTGAATAT...TTGTGAATCATATTGTTTAAATGGCACACACTTCACCAGAACCTCTGGCAAGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CCA 90 bp CGTTATATACATCTAATTAAGGTACAGGATAGGAAGAGATGGTTTACCTTTGGAACTGAGCAGCTTTCCTaGTGGTGTTGCTGTCATCCA +
Preference number: 4 (lower is better)
Translates to: RYIHLIKVQDRKRWFTFGTEQLS*WCCCHP
Trigger: TGGATGACAGCAACACCACCAGGAAAGCTGCTCAGT...TCCAAAGGTAAACCATCTCTTCCTATCCTGTACCTTAATTAGATGTATATAACG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CCA 90 bp TACCAGAACAACCATTTCTGCAGTTCACTATTCCTGTTACTGGAATTCATATTACGCACAGGGGGATGTTaGAAGGGTATAAACTGCTTC +
Preference number: 4 (lower is better)
Translates to: YQNNHFCSSLFLLLEFILRTGGC*KGINCF
Trigger: GAAGCAGTTTATACCCTTCCAACATCCCCCTGTGCG...TAATATGAATTCCAGTAACAGGAATAGTGAACTGCAGAAATGGTTGTTCTGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGTCTGGCCATCTTTATTaGAGTAGCAGAGGAAGACCT +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLSGHLY*SSRGRP
Trigger: AGGTCTTCCTCTGCTACTCCAATAAAGATGGCCAGA...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp CGTTATATACATCTAATTAAGGTACAGGATAGGAAGAGATGGTTTACCTTTGGATGGACCACGTTCATGTaGTTCTGGCCATCTTTATTG +
Preference number: 4 (lower is better)
Translates to: RYIHLIKVQDRKRWFTFGWTTFM*FWPSLL
Trigger: CAATAAAGATGGCCAGAATCACATGAACGTGGTCCA...TCCAAAGGTAAACCATCTCTTCCTATCCTGTACCTTAATTAGATGTATATAACG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR TCA 90 bp TACCAGAACAACCATTTCTGCAGTTCACTATTCCTGTTACTGGAATTCATATTATGGACCACGTTCATGTaGTTCTGGCCATCTTTATTG +
Preference number: 4 (lower is better)
Translates to: YQNNHFCSSLFLLLEFILWTTFM*FWPSLL
Trigger: CAATAAAGATGGCCAGAATCACATGAACGTGGTCCA...TAATATGAATTCCAGTAACAGGAATAGTGAACTGCAGAAATGGTTGTTCTGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR GCA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGCTACAAAGTACTTCATaGCTTTGGAGCACACGACAA +
Preference number: 4 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLLQSTS*LWSTRQ
Trigger: TTGTCGTGTGCTCCAAAGGCATGAAGTACTTTGTAG...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR GCA 90 bp GGCACAATCCCACAGACCCTTATCCAACACATGCATTTAGTATTCCAATCTTTTTCATCAATAAACTGGTaGATGTTGCAAATGGCAACA +
Preference number: 4 (lower is better)
Translates to: GTIPQTLIQHMHLVFQSFSSINW*MLQMAT
Trigger: TGTTGCCATTTGCAACATGCACCAGTTTATTGATGA...AAAAGATTGGAATACTAAATGCATGTGTTGGATAAGGGTCTGTGGGATTGTGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
3UTR CAA 72 bp TGTTTTACAAAACGTGACTGGATGAATGTTCAATCATaGTCTGGACCTTGGACTCAAGGTTTACTTAACACT +
Preference number: 4 (lower is better)
Translates to: CFTKRDWMNVQS*SGPWTQGLLNT
Trigger: AGTGTTAAGTAAACCTTGAGTCCAAGGTCCAGACAATGATTGAACATTCATCCAGTCACGTTTTGTAAAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
3UTR CAA 72 bp TTGCTAATATTTAGCTTTTGTTGTTGTTTGTTGTTGTaGTTGCATGTGGTTTTGGTGTTGCACTCGTGCACA +
Preference number: 4 (lower is better)
Translates to: LLIFSFCCCLLL*LHVVLVLHSCT
Trigger: TGTGCACGAGTGCAACACCAAAACCACATGCAACAACAACAACAAACAACAACAAAAGCTAAATATTAGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS CCA 90 bp GTGCGGCAGATGAGCTCTGCTTGGCCTGACGGAGCTTCTCAGCAATaGCTGCCACGGCCACCAGGAAGAACTCGCCTTGCGCCTCGCCGC +
Preference number: 5 (lower is better)
Translates to: VRQMSSAWPDGASQQ*LPRPPGRTRLAPRR
Trigger: GCGGCGAGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTGCCGCAC
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 90 bp ACGGCGATGAACTTGCGCAGTGCGGCAGATGAGCTCTGCTTGGCCTaGCGGAGCTTCTCAGCAATGGCTGCCACGGCCACCAGGAAGAAC +
Preference number: 5 (lower is better)
Translates to: TAMNLRSAADELCLA*RSFSAMAATATRKN
Trigger: GTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTGCCGCACTGCGCAAGTTCATCGCCGT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 90 bp TGGAGTAGCAGAGGAAGACCTTGGGCTGAGGCCGGAGCCTGTCTCTaGGGAGAGCCGCAGCGTATGTGGACGACTCCGGGCTTTCTTCAT +
Preference number: 5 (lower is better)
Translates to: WSSRGRPWAEAGACL*GEPQRMWTTPGFLH
Trigger: ATGAAGAAAGCCCGGAGTCGTCCACATACGCTGCGGCTCTCCCCAGAGACAGGCTCCGGCCTCAGCCCAAGGTCTTCCTCTGCTACTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 90 bp GCTCTCCTGAGTGCAGATGGGCACAGAGCTCAGGAAGGTGGTCCATaGGCTTGTACTTGGTGCTCAGGTCCAGGCTGCAGGGTACATCCC +
Preference number: 5 (lower is better)
Translates to: ALLSADGHRAQEGGP*ACTWCSGPGCRVHP
Trigger: GGGATGTACCCTGCAGCCTGGACCTGAGCACCAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTGTGCCCATCTGCACTCAGGAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 90 bp GGCCTCAGTGTCTTGGTCCAGGCCTACATGCTGACTCTCCAGGTATaGATAAGAGTCGGCTGGCCCAGCGGCCCCAAGTACACAAGCCTC +
Preference number: 5 (lower is better)
Translates to: GLSVLVQAYMLTLQV*IRVGWPSGPKYTSL
Trigger: GAGGCTTGTGTACTTGGGGCCGCTGGGCCAGCCGACTCTTATTCATACCTGGAGAGTCAGCATGTAGGCCTGGACCAAGACACTGAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 90 bp AGCTTCTCAGCAATGGCTGCCACGGCCACCAGGAAGAACTCGCCTTaGGCCTCGCCGCGGCTGCCTCCTTTGTGTCTGAAGTTCTTCTTA +
Preference number: 5 (lower is better)
Translates to: SFSAMAATATRKNSP*ASPRLPPLCLKFFL
Trigger: TAAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 90 bp ACCTCCTGCTCTCCTGAGTGCAGATGGGCACAGAGCTCAGGAAGGTaGTCCATGAGCTTGTACTTGGTGCTCAGGTCCAGGCTGCAGGGT +
Preference number: 5 (lower is better)
Translates to: TSCSPECRWAQSSGR*SMSLYLVLRSRLQG
Trigger: ACCCTGCAGCCTGGACCTGAGCACCAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTGTGCCCATCTGCACTCAGGAGAGCAGGAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp ACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCAAGGTTACGCCAGCTGCGAGCCGTaGAGACAGGCGTTGACAGTG +
Preference number: 5 (lower is better)
Translates to: TTEPSPQPHNKFLARQGYASCEP*RQALTV
Trigger: CACTGTCAACGCCTGTCTCAACGGCTCGCAGCTGGC...GTAACCTTGCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CAA 90 bp CCAGTCCTCCCCACGCCTGAGGCCCTCCTCCATAACATGGAAGCTTCCACAGTACCCTGGAGAAACGTTTaGGAGGAGGCAGCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: PVLPTPEALLHNMEASTVPWRNV*EEAAGC
Trigger: ACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGG...TACTGTGGAAGCTTCCATGTTATGGAGGAGGGCCTCAGGCGTGGGGAGGACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS TCA 90 bp TCAGCTGTTGGCACTGTCTGCCCTCCGACTTCAGCTCCTCCAGGATaGCTCGGAATCCTTTTAGGAATTCAATGCCAAGGGCCCCTGGGG +
Preference number: 5 (lower is better)
Translates to: SAVGTVCPPTSAPPG*LGILLGIQCQGPLG
Trigger: CCCCAGGGGCCCTTGGCATTGAATTCCTAAAAGGATTCCGAGTCATCCTGGAGGAGCTGAAGTCGGAGGGCAGACAGTGCCAACAGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS TCA 90 bp GGAATAATCGAAGTAGACGGCGATGAACTTGCGCAGTGCGGCAGATaGGCTCTGCTTGGCCTGACGGAGCTTCTCAGCAATGGCTGCCAC +
Preference number: 5 (lower is better)
Translates to: GIIEVDGDELAQCGR*ALLGLTELLSNGCH
Trigger: GTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCGATTATTCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 90 bp CAGAAGAATCATATATGCCTGAGTCCCGTGGCATCTCTGAGGGACTaGCAGCTTTCACTGCGTGTAACAGGGGCTGCAAGGCAGGGGCAC +
Preference number: 5 (lower is better)
Translates to: QKNHICLSPVASLRD*QLSLRVTGAARQGH
Trigger: GTGCCCCTGCCTTGCAGCCCCTGTTACACGCAGTGAAAGCTGGCAGTCCCTCAGAGATGCCACGGGACTCAGGCATATATGATTCTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp GTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTGCCAGCTGCGAGCCGTaGAGACAGGCGTTGACAGTG +
Preference number: 5 (lower is better)
Translates to: VTCFHSTPLRAGSDPRISASCEP*RQALTV
Trigger: CACTGTCAACGCCTGTCTCAACGGCTCGCAGCTGGC...ACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS TCA 90 bp TGCAGGGTACATCCCCTTCACAGGAATAATCGAAGTAGACGGCGATaGACTTGCGCAGTGCGGCAGATGAGCTCTGCTTGGCCTGACGGA +
Preference number: 5 (lower is better)
Translates to: CRVHPLHRNNRSRRR*TCAVRQMSSAWPDG
Trigger: TCCGTCAGGCCAAGCAGAGCTCATCTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCGATTATTCCTGTGAAGGGGATGTACCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 90 bp AAGCCACGGAAGCCGAAGTTCTGCGGGGCATGGTCGAAGGACACGTaGATGTCAGAACCATGCTGGCTGATATTCAGGTTTCGAGGCTTC +
Preference number: 5 (lower is better)
Translates to: KPRKPKFCGAWSKDT*MSEPCWLIFRFRGF
Trigger: GAAGCCTCGAAACCTGAATATCAGCCAGCATGGTTCTGACATGCACGTGTCCTTCGACCATGCCCCGCAGAACTTCGGCTTCCGTGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 90 bp CTGAAGCTGCTGTTGAGCTGTTTGGGGTCCTTTAGAATCAGCTGTTaGCACTGTCTGCCCTCCGACTTCAGCTCCTCCAGGATGACTCGG +
Preference number: 5 (lower is better)
Translates to: LKLLLSCLGSFRISC*HCLPSDFSSSRMTR
Trigger: CCGAGTCATCCTGGAGGAGCTGAAGTCGGAGGGCAGACAGTGCCAACAGCTGATTCTAAAGGACCCCAAACAGCTCAACAGCAGCTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS-3UTR CAA 90 bp CCACTCTACCCCTCTCAGAGCAGGCTCAGATCCAAGGATCAGTCTGAGATGGACCCCTGGAGAAACGTTTaGGAGGAGGCAGCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: PLYPSQSRLRSKDQSEMDPWRNV*EEAAGC
Trigger: ACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGG...GTCCATCTCAGACTGATCCTTGGATCTGAGCCTGCTCTGAGAGGGGTAGAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp GATCGAGTTCCAAGACAGCCAGGGCTACACAGAGAACCTTATCTTGAAAAATCACAGGAAGAACTCGCCTaGCGCCTCGCCGCGGCTGCC +
Preference number: 5 (lower is better)
Translates to: DRVPRQPGLHREPYLEKSQEELA*RLAAAA
Trigger: GGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTG...TGATTTTTCAAGATAAGGTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCGATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTCAGGAAGAACTCGCCTaGCGCCTCGCCGCGGCTGCC +
Preference number: 5 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPQEELA*RLAAAA
Trigger: GGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTG...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CACTCCCAACCACTGAGCCATCTCCCCAGCCCCATAACAAGTTTCTGGCAAGGCCTGCTGTTGAGCTGTTaGGGGTCCTTTAGAATCAGC +
Preference number: 5 (lower is better)
Translates to: HSQPLSHLPSPITSFWQGLLLSC*GSFRIS
Trigger: GCTGATTCTAAAGGACCCCAAACAGCTCAACAGCAG...GCCTTGCCAGAAACTTGTTATGGGGCTGGGGAGATGGCTCAGTGGTTGGGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CAA 90 bp CCAACACATGCATTTAGTATTCCAATCTTTTCAGAGTTAGGAGACTGCCAACCCCAGGAAGAACTCGCCTaGCGCCTCGCCGCGGCTGCC +
Preference number: 5 (lower is better)
Translates to: PTHAFSIPIFSELGDCQPQEELA*RLAAAA
Trigger: GGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTG...GGGTTGGCAGTCTCCTAACTCTGAAAAGATTGGAATACTAAATGCATGTGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACGCTTTCCTGGTGGTGTaGCTGTCATCCACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHAFLVV*LSSTSS
Trigger: TGAGCTGGTGGATGACAGCAACACCACCAGGAAAGC...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAATAGCTTTCCTGGTGGTGTaGCTGTCATCCACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: LHVPHPAPIPMCVHTQKIAFLVV*LSSTSS
Trigger: TGAGCTGGTGGATGACAGCAACACCACCAGGAAAGC...TATTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS TCA 90 bp ACTGAGCAGCTTTCCTGGTGGTGTTGCTGTCATCCACCAGCTCAATaGTATAGTCCCCTGGAGAAACGTTTTGGAGGAGGCAGCTGGTTG +
Preference number: 5 (lower is better)
Translates to: TEQLSWWCCCHPPAQ*YSPLEKRFGGGSWL
Trigger: CAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATATCATTGAGCTGGTGGATGACAGCAACACCACCAGGAAAGCTGCTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 90 bp GGAAGAACTCGCCTTGCGCCTCGCCGCGGCTGCCTCCTTTGTGTCTaGAGTTCTTCTTATCTACAAAGTACTTCATGCCTTTGGAGCACA +
Preference number: 5 (lower is better)
Translates to: GRTRLAPRRGCLLCV*SSSYLQSTSCLWST
Trigger: TGTGCTCCAAAGGCATGAAGTACTTTGTAGATAAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 90 bp TCAGAGGCAGAGAGAGCTCTGATGAGGGTACAGAAGAATCATATATaGCTGAGTCCCGTGGCATCTCTGAGGGACTGCCAGCTTTCACTG +
Preference number: 5 (lower is better)
Translates to: SEAERALMRVQKNHI*LSPVASLRDCQLSL
Trigger: CAGTGAAAGCTGGCAGTCCCTCAGAGATGCCACGGGACTCAGGCATATATGATTCTTCTGTACCCTCATCAGAGCTCTCTCTGCCTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 90 bp TGGGCTGAGGCCGGAGCCTGTCTCTGGGGAGAGCCGCAGCGTATGTaGACGACTCCGGGCTTTCTTCATCTAAATGTGAATATATATTTT +
Preference number: 5 (lower is better)
Translates to: WAEAGACLWGEPQRM*TTPGFLHLNVNIYF
Trigger: AAAATATATATTCACATTTAGATGAAGAAAGCCCGGAGTCGTCCACATACGCTGCGGCTCTCCCCAGAGACAGGCTCCGGCCTCAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTGGAGGAGGCAGCTGGTaGTCTCTGTATTCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAGGGSW*SLYSGP
Trigger: AGGACCAGAATACAGAGACAACCAGCTGCCTCCTCC...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCCCTGGAGAAACGTTTaGGAGGAGGCAGCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSPWRNV*EEAAGC
Trigger: ACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGG...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp GGCCTTGAAGAAGACACCAGACACAAGCCCCAGCTGCTCACCTGCAGGAGAGAAACAGCCACAGAAATCTaGCAGGAAATAGGCGAAACA +
Preference number: 5 (lower is better)
Translates to: GLEEDTRHKPQLLTCRRETATEI*QEIGET
Trigger: TGTTTCGCCTATTTCCTGCAAGATTTCTGTGGCTGT...TTCTCTCCTGCAGGTGAGCAGCTGGGGCTTGTGTCTGGTGTCTTCTTCAAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS TCA 90 bp CCAGAGGAGGAAGATACACTCTCGGTCAGAGAAGATGTTTCTATCTaGTCCGGAGAGAGTCCCTCCATCAGAGGCAGAGAGAGCTCTGAT +
Preference number: 5 (lower is better)
Translates to: PEEEDTLSVREDVSI*SGESPSIRGRESSD
Trigger: ATCAGAGCTCTCTCTGCCTCTGATGGAGGGACTCTCTCCGGATCAGATAGAAACATCTTCTCTGACCGAGAGTGTATCTTCCTCCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 90 bp CCTGGTGGTGTTGCTGTCATCCACCAGCTCAATGATATAGTCCCCTaGAGAAACGTTTTGGAGGAGGCAGCTGGTTGTCTCTGTATTCTG +
Preference number: 5 (lower is better)
Translates to: PGGVAVIHQLNDIVP*RNVLEEAAGCLCIL
Trigger: CAGAATACAGAGACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATATCATTGAGCTGGTGGATGACAGCAACACCACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp GCCAGAGCAGGCTGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTGGCTTACAGGCCAAGTaGTCAGGTTGTAACAACAGG +
Preference number: 5 (lower is better)
Translates to: ARAGCVGAFLFLVTCFHSGLQAK*SGCNNR
Trigger: CCTGTTGTTACAACCTGACAACTTGGCCTGTAAGCC...AGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACAGCCTGCTCTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACGGCTTACAGGCCAAGTaGTCAGGTTGTAACAACAGG +
Preference number: 5 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHGLQAK*SGCNNR
Trigger: CCTGTTGTTACAACCTGACAACTTGGCCTGTAAGCC...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp TTTTACTGCGAGACCAGCTCACAGCTTGCCCAGAGCAGCTGCTCTGTTCTCTGCAAGTACTTCATGCCTTaGGAGCACACGACAATGATG +
Preference number: 5 (lower is better)
Translates to: FYCETSSQLAQSSCSVLCKYFMP*EHTTMM
Trigger: CATCATTGTCGTGTGCTCCAAAGGCATGAAGTACTT...GCAGAGAACAGAGCAGCTGCTCTGGGCAAGCTGTGAGCTGGTCTCGCAGTAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGACCGTTGAGACAGGCGTaGACAGTGAAGAAGAAGGAG +
Preference number: 5 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRPLRQA*TVKKKE
Trigger: CTCCTTCTTCTTCACTGTCAACGCCTGTCTCAACGG...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTTATCTGAAGGTGATGTaGTGCAGTCCGCTGTTCCTG +
Preference number: 5 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAYLKVM*CSPLFL
Trigger: CAGGAACAGCGGACTGCACAACATCACCTTCAGATA...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp CATCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCGGCTTACAGGCCAAGTaGTCAGGTTGTAACAACAGG +
Preference number: 5 (lower is better)
Translates to: HLGFKGGGKIKGSKHFSSGLQAK*SGCNNR
Trigger: CCTGTTGTTACAACCTGACAACTTGGCCTGTAAGCC...GGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp GCCTGCACGTGCCACACCCAGCCCCTATTCCCATGTGTGTACACACACAGAAAACTCTCTGGCCCTGGTTaGCTTATGACATCATTTAAA +
Preference number: 5 (lower is better)
Translates to: ACTCHTQPLFPCVYTHRKLSGPG*LMTSFK
Trigger: TTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAG...TTTTCTGTGTGTGTACACACATGGGAATAGGGGCTGGGTGTGGCACGTGCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp GGAAGGGACAGGAGGTTTGCCAGCCTTAACCTATATAACTTCAGACCTTGTTTGCCGTTGAGACAGGCGTaGACAGTGAAGAAGAAGGAG +
Preference number: 5 (lower is better)
Translates to: GRDRRFASLNLYNFRPCLPLRQA*TVKKKE
Trigger: CTCCTTCTTCTTCACTGTCAACGCCTGTCTCAACGG...CAAACAAGGTCTGAAGTTATATAGGTTAAGGCTGGCAAACCTCCTGTCCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CAA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGACAGCCACAGAAATCTaGCAGGAAATAGGCGAAACA +
Preference number: 5 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQTATEI*QEIGET
Trigger: TGTTTCGCCTATTTCCTGCAAGATTTCTGTGGCTGT...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp CTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAGAAGTACTTCATGCCTTaGGAGCACACGACAATGATG +
Preference number: 5 (lower is better)
Translates to: LGFKGGGKIKGSKHFSSQKYFMP*EHTTMM
Trigger: CATCATTGTCGTGTGCTCCAAAGGCATGAAGTACTT...CTGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS GCA 90 bp ATAAACTGCTTCTCAAACCAGTCAGGCTCCTCATCAATAAACTGGTaGATGTTGCAAATGGCAACATACAGGGAGCGGCCCGATTTGCTC +
Preference number: 5 (lower is better)
Translates to: INCFSNQSGSSSINW*MLQMATYRERPDLL
Trigger: GAGCAAATCGGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAGCCTGACTGGTTTGAGAAGCAGTTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 90 bp GGTATAAACTGCTTCTCAAACCAGTCAGGCTCCTCATCAATAAACTaGTGCATGTTGCAAATGGCAACATACAGGGAGCGGCCCGATTTG +
Preference number: 5 (lower is better)
Translates to: GINCFSNQSGSSSIN*CMLQMATYRERPDL
Trigger: CAAATCGGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAGCCTGACTGGTTTGAGAAGCAGTTTATACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp ACCTGTAGGGCACGCATAAACACAGGTCAACAACTTTCTTTCTTGGTTTCCTGGCTGCTGTTGAGCTGTTaGGGGTCCTTTAGAATCAGC +
Preference number: 5 (lower is better)
Translates to: TCRARINTGQQLSFLVSWLLLSC*GSFRIS
Trigger: GCTGATTCTAAAGGACCCCAAACAGCTCAACAGCAG...CCAGGAAACCAAGAAAGAAAGTTGTTGACCTGTGTTTATGCGTGCCCTACAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp CCACAAAGCATTTTGAGTTTAAGTAGCCAGAGTTCAAGTGAAGCCAGAGCAGGCCTTCTGAAGCTGCTGTaGAGCTGTTTGGGGTCCTTT +
Preference number: 5 (lower is better)
Translates to: PQSILSLSSQSSSEARAGLLKLL*SCLGSF
Trigger: AAAGGACCCCAAACAGCTCAACAGCAGCTTCAGAAG...GCCTGCTCTGGCTTCACTTGAACTCTGGCTACTTAAACTCAAAATGCTTTGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp CCAACACATGCATTTAGTATTCCAATCTTTTCAGAGTTAGGAGACTGCCAACCCGGAGGAGGCAGCTGGTaGTCTCTGTATTCTGGTCCT +
Preference number: 5 (lower is better)
Translates to: PTHAFSIPIFSELGDCQPGGGSW*SLYSGP
Trigger: AGGACCAGAATACAGAGACAACCAGCTGCCTCCTCC...GGGTTGGCAGTCTCCTAACTCTGAAAAGATTGGAATACTAAATGCATGTGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp ATTGAATATAATCCAGTGGTAGCCACACAGGGCCAATATTCTTCCTTCTCTTCCGCTTTCCTGGTGGTGTaGCTGTCATCCACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: IEYNPVVATQGQYSSFSSAFLVV*LSSTSS
Trigger: TGAGCTGGTGGATGACAGCAACACCACCAGGAAAGC...GGAAGAGAAGGAAGAATATTGGCCCTGTGTGGCTACCACTGGATTATATTCAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp GAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAGCAGGCTAAGTACTTCATGCCTTaGGAGCACACGACAATGATG +
Preference number: 5 (lower is better)
Translates to: ELSYFSLPVSTLPLSEQAKYFMP*EHTTMM
Trigger: CATCATTGTCGTGTGCTCCAAAGGCATGAAGTACTT...AGCCTGCTCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CAGGGAAAACGCCCAGGTCCTGACAACGTCTGCACATTAATCAGCCAGTTTCACCTCTCTGGCCCTGGTTaGCTTATGACATCATTTAAA +
Preference number: 5 (lower is better)
Translates to: QGKRPGPDNVCTLISQFHLSGPG*LMTSFK
Trigger: TTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAG...GTGAAACTGGCTGATTAATGTGCAGACGTTGTCAGGACCTGGGCGTTTTCCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS TCA 90 bp CCTCGACTTTCCGACAGAAGTCACTCTCTGGCCCTGGTTTGCTTATaGCATCATTTAAAACCAAGCCTGAGTCAAATTTCTCCAGGACTG +
Preference number: 5 (lower is better)
Translates to: PRLSDRSHSLALVCL*HHLKPSLSQISPGL
Trigger: CAGTCCTGGAGAAATTTGACTCAGGCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGTCGGAAAGTCGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp TCTGGGCTTCAAAGGCGGTGGAAAGATAAAAGGCAGCAAACACTTCAGCTCCCAATAAACTGGTGCATGTaGCAAATGGCAACATACAGG +
Preference number: 5 (lower is better)
Translates to: SGLQRRWKDKRQQTLQLPINWCM*QMATYR
Trigger: CCTGTATGTTGCCATTTGCAACATGCACCAGTTTAT...TGGGAGCTGAAGTGTTTGCTGCCTTTTATCTTTCCACCGCCTTTGAAGCCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226105.2
CDS-3UTR CAA 90 bp CACTGCTGGGAAGGTGACCAGCTGTTCTTTCTCCTCTATGCTGCAGACAAAAGACTCTCTGGCCCTGGTTaGCTTATGACATCATTTAAA +
Preference number: 5 (lower is better)
Translates to: HCWEGDQLFFLLYAADKRLSGPG*LMTSFK
Trigger: TTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAG...TCTTTTGTCTGCAGCATAGAGGAGAAAGAACAGCTGGTCACCTTCCCAGCAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS-3UTR CAA 90 bp TGTGTGGGAGCTTTCCTATTTCTCGTTACCTGTTTCCACTCTACCCCTCTCAGAATAAACTGGTGCATGTaGCAAATGGCAACATACAGG +
Preference number: 5 (lower is better)
Translates to: CVGAFLFLVTCFHSTPLRINWCM*QMATYR
Trigger: CCTGTATGTTGCCATTTGCAACATGCACCAGTTTAT...TCTGAGAGGGGTAGAGTGGAAACAGGTAACGAGAAATAGGAAAGCTCCCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CCTTTCAGGGTTCCATATGCTTTTGGGAAACTGGAGACTTTGCTAAGTATCCCTATAAACTGGTGCATGTaGCAAATGGCAACATACAGG +
Preference number: 5 (lower is better)
Translates to: PFRVPYAFGKLETLLSIPINWCM*QMATYR
Trigger: CCTGTATGTTGCCATTTGCAACATGCACCAGTTTAT...AGGGATACTTAGCAAAGTCTCCAGTTTCCCAAAAGCATATGGAACCCTGAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS-3UTR CAA 90 bp CTCTGTATCAGTACCTGGTGTGTTTGTAATCACTCAAAAGAAATCACTCCTTTACTTCTGAAGCTGCTGTaGAGCTGTTTGGGGTCCTTT +
Preference number: 5 (lower is better)
Translates to: LCISTWCVCNHSKEITPLLLKLL*SCLGSF
Trigger: AAAGGACCCCAAACAGCTCAACAGCAGCTTCAGAAG...TAAAGGAGTGATTTCTTTTGAGTGATTACAAACACACCAGGTACTGATACAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223942.2
CDS-3UTR CAA 90 bp AAAATTCAAGACACGGCACCAGCCAAAATACAAACCACGATTCTAATAATGTTGACAGCCACAGAAATCTaGCAGGAAATAGGCGAAACA +
Preference number: 5 (lower is better)
Translates to: KIQDTAPAKIQTTILIMLTATEI*QEIGET
Trigger: TGTTTCGCCTATTTCCTGCAAGATTTCTGTGGCTGT...CAACATTATTAGAATCGTGGTTTGTATTTTGGCTGGTGCCGTGTCTTGAATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS CAA 90 bp CTCGCGCGGCCGGAGCCGCCCGCGGCCACTGCCAGCTGCGAGCCGTaGAGACAGGCGTTGACAGTGAAGAAGAAGGAGCAGAGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: LARPEPPAATASCEP*RQALTVKKKEQSCS
Trigger: GCTGCAGCTCTGCTCCTTCTTCTTCACTGTCAACGCCTGTCTCAACGGCTCGCAGCTGGCAGTGGCCGCGGGCGGCTCCGGCCGCGCGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS CAA 72 bp CCGGAGCCGCCCGCGGCCACTGCCAGCTGCGAGCCGTaGAGACAGGCGTTGACAGTGAAGAAGAAGGAGCAG +
Preference number: 6 (lower is better)
Translates to: PEPPAATASCEP*RQALTVKKKEQ
Trigger: CTGCTCCTTCTTCTTCACTGTCAACGCCTGTCTCAACGGCTCGCAGCTGGCAGTGGCCGCGGGCGGCTCCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS GCA 72 bp GCAATGGCTGCCACGGCCACCAGGAAGAACTCGCCTTaGGCCTCGCCGCGGCTGCCTCCTTTGTGTCTGAAG +
Preference number: 6 (lower is better)
Translates to: AMAATATRKNSP*ASPRLPPLCLK
Trigger: CTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp GCTCTGCTTGGCCTGACGGAGCTTCTCAGCAATGGCTaGCACGGCCACCAGGAAGAACTCGCCTTGCGCCTC +
Preference number: 6 (lower is better)
Translates to: ALLGLTELLSNG*HGHQEELALRL
Trigger: GAGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp AGCAATGGCTGCCACGGCCACCAGGAAGAACTCGCCTaGCGCCTCGCCGCGGCTGCCTCCTTTGTGTCTGAA +
Preference number: 6 (lower is better)
Translates to: SNGCHGHQEELA*RLAAAASFVSE
Trigger: TTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp AACTTGCGCAGTGCGGCAGATGAGCTCTGCTTGGCCTaGCGGAGCTTCTCAGCAATGGCTGCCACGGCCACC +
Preference number: 6 (lower is better)
Translates to: NLRSAADELCLA*RSFSAMAATAT
Trigger: GGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTGCCGCACTGCGCAAGTT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp TGGAGGAGGCAGCTGGTTGTCTCTGTATTCTGGTCCTaGCTGCAAGTCCTCCGCCTGAAGGGGCCTTCGTGC +
Preference number: 6 (lower is better)
Translates to: WRRQLVVSVFWS*LQVLRLKGPSC
Trigger: GCACGAAGGCCCCTTCAGGCGGAGGACTTGCAGGCAGGACCAGAATACAGAGACAACCAGCTGCCTCCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 72 bp ATGAGCTCTGCTTGGCCTGACGGAGCTTCTCAGCAATaGCTGCCACGGCCACCAGGAAGAACTCGCCTTGCG +
Preference number: 6 (lower is better)
Translates to: MSSAWPDGASQQ*LPRPPGRTRLA
Trigger: CGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCAT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp GAGCTTCTCAGCAATGGCTGCCACGGCCACCAGGAAGAACTCGCCTaGCGCCTCGCCGCGGCTGCCTCCTTTGTGTCTGAAGTTCTTCTT +
Preference number: 6 (lower is better)
Translates to: ELLSNGCHGHQEELA*RLAAAASFVSEVLL
Trigger: AAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp AATGCCAAGGGCCCCTGGGGACCAAAGAATGGTGACTaGCACCTGGTCGTGGCAAGCGTACTGGCTGATGGT +
Preference number: 6 (lower is better)
Translates to: NAKGPWGPKNGD*HLVVASVLADG
Trigger: ACCATCAGCCAGTACGCTTGCCACGACCAGGTGGCAGTCACCATTCTTTGGTCCCCAGGGGCCCTTGGCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS CCA 72 bp AGGGCCCCTGGGGACCAAAGAATGGTGACTGCCACCTaGTCGTGGCAAGCGTACTGGCTGATGGTGATGTTC +
Preference number: 6 (lower is better)
Translates to: RAPGDQRMVTAT*SWQAYWLMVMF
Trigger: GAACATCACCATCAGCCAGTACGCTTGCCACGACCAGGTGGCAGTCACCATTCTTTGGTCCCCAGGGGCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS CCA 72 bp GCAGTTCGTCAGTGTGGCTGTGGCAACCATGTTCTCTaGACACCCCAGAGGCAAGGAGCTTGGAAGGGAGGG +
Preference number: 6 (lower is better)
Translates to: AVRQCGCGNHVL*TPQRQGAWKGG
Trigger: CCCTCCCTTCCAAGCTCCTTGCCTCTGGGGTGTCCAGAGAACATGGTTGCCACAGCCACACTGACGAACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
CDS CAA 90 bp CCTGAGTGCAGATGGGCACAGAGCTCAGGAAGGTGGTCCATGAGCTaGTACTTGGTGCTCAGGTCCAGGCTGCAGGGTACATCCCCTTCA +
Preference number: 6 (lower is better)
Translates to: PECRWAQSSGRWSMS*YLVLRSRLQGTSPS
Trigger: TGAAGGGGATGTACCCTGCAGCCTGGACCTGAGCACCAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTGTGCCCATCTGCACTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp AGTGCAGATGGGCACAGAGCTCAGGAAGGTGGTCCATaGGCTTGTACTTGGTGCTCAGGTCCAGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: SADGHRAQEGGP*ACTWCSGPGCR
Trigger: CCTGCAGCCTGGACCTGAGCACCAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTGTGCCCATCTGCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp GTCTTGGTCCAGGCCTACATGCTGACTCTCCAGGTATaGATAAGAGTCGGCTGGCCCAGCGGCCCCAAGTAC +
Preference number: 6 (lower is better)
Translates to: VLVQAYMLTLQV*IRVGWPSGPKY
Trigger: GTACTTGGGGCCGCTGGGCCAGCCGACTCTTATTCATACCTGGAGAGTCAGCATGTAGGCCTGGACCAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 72 bp ACATGGAAGCCACGGAAGCCGAAGTTCTGCGGGGCATaGTCGAAGGACACGTGCATGTCAGAACCATGCTGG +
Preference number: 6 (lower is better)
Translates to: TWKPRKPKFCGA*SKDTCMSEPCW
Trigger: CCAGCATGGTTCTGACATGCACGTGTCCTTCGACCATGCCCCGCAGAACTTCGGCTTCCGTGGCTTCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp TGCAGATGGGCACAGAGCTCAGGAAGGTGGTCCATGAGCTTGTACTaGGTGCTCAGGTCCAGGCTGCAGGGTACATCCCCTTCACAGGAA +
Preference number: 6 (lower is better)
Translates to: CRWAQSSGRWSMSLY*VLRSRLQGTSPSQE
Trigger: TTCCTGTGAAGGGGATGTACCCTGCAGCCTGGACCTGAGCACCAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTGTGCCCATCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp TGGTCGTGGCAAGCGTACTGGCTGATGGTGATGTTCTaGGCATCAGCAATCGCATGCTTCCCGCCGGGATTC +
Preference number: 6 (lower is better)
Translates to: WSWQAYWLMVMF*ASAIACFPPGF
Trigger: GAATCCCGGCGGGAAGCATGCGATTGCTGATGCTCAGAACATCACCATCAGCCAGTACGCTTGCCACGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS TCA 72 bp GAAGTAGACGGCGATGAACTTGCGCAGTGCGGCAGATaGGCTCTGCTTGGCCTGACGGAGCTTCTCAGCAAT +
Preference number: 6 (lower is better)
Translates to: EVDGDELAQCGR*ALLGLTELLSN
Trigger: ATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAGCTCATCTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp CATATATGCCTGAGTCCCGTGGCATCTCTGAGGGACTaGCAGCTTTCACTGCGTGTAACAGGGGCTGCAAGG +
Preference number: 6 (lower is better)
Translates to: HICLSPVASLRD*QLSLRVTGAAR
Trigger: CCTTGCAGCCCCTGTTACACGCAGTGAAAGCTGGCAGTCCCTCAGAGATGCCACGGGACTCAGGCATATATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 72 bp GCCGGAGCCTGTCTCTGGGGAGAGCCGCAGCGTATGTaGACGACTCCGGGCTTTCTTCATCTAAATGTGAAT +
Preference number: 6 (lower is better)
Translates to: AGACLWGEPQRM*TTPGFLHLNVN
Trigger: ATTCACATTTAGATGAAGAAAGCCCGGAGTCGTCCACATACGCTGCGGCTCTCCCCAGAGACAGGCTCCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp TGTTGCAAATGGCAACATACAGGGAGCGGCCCGATTTaGTCCGGAAGTAGTTCCTTCTGCTGCTGTGGCCTG +
Preference number: 6 (lower is better)
Translates to: CCKWQHTGSGPI*SGSSSFCCCGL
Trigger: CAGGCCACAGCAGCAGAAGGAACTACTTCCGGAGCAAATCGGGCCGCTCCCTGTATGTTGCCATTTGCAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 72 bp CTGTTGAGCTGTTTGGGGTCCTTTAGAATCAGCTGTTaGCACTGTCTGCCCTCCGACTTCAGCTCCTCCAGG +
Preference number: 6 (lower is better)
Translates to: LLSCLGSFRISC*HCLPSDFSSSR
Trigger: CCTGGAGGAGCTGAAGTCGGAGGGCAGACAGTGCCAACAGCTGATTCTAAAGGACCCCAAACAGCTCAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS CAA 72 bp AGTCCCCTGGAGAAACGTTTTGGAGGAGGCAGCTGGTaGTCTCTGTATTCTGGTCCTGCCTGCAAGTCCTCC +
Preference number: 6 (lower is better)
Translates to: SPLEKRFGGGSW*SLYSGPACKSS
Trigger: GGAGGACTTGCAGGCAGGACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp GGCACTGTCTGCCCTCCGACTTCAGCTCCTCCAGGATaGCTCGGAATCCTTTTAGGAATTCAATGCCAAGGG +
Preference number: 6 (lower is better)
Translates to: GTVCPPTSAPPG*LGILLGIQCQG
Trigger: CCCTTGGCATTGAATTCCTAAAAGGATTCCGAGTCATCCTGGAGGAGCTGAAGTCGGAGGGCAGACAGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035336.5
ENSMUST00000223942.2
CDS TCA 72 bp CATCCCCTTCACAGGAATAATCGAAGTAGACGGCGATaGACTTGCGCAGTGCGGCAGATGAGCTCTGCTTGG +
Preference number: 6 (lower is better)
Translates to: HPLHRNNRSRRR*TCAVRQMSSAW
Trigger: CCAAGCAGAGCTCATCTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCGATTATTCCTGTGAAGGGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp CTCCAGGACTGGCTCCTGGTAACGCACAGGGGGATGTaGGAAGGGTATAAACTGCTTCTCAAACCAGTCAGG +
Preference number: 6 (lower is better)
Translates to: LQDWLLVTHRGM*EGYKLLLKPVR
Trigger: CCTGACTGGTTTGAGAAGCAGTTTATACCCTTCCAACATCCCCCTGTGCGTTACCAGGAGCCAGTCCTGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp GCCACCAGGAAGAACTCGCCTTGCGCCTCGCCGCGGCTGCCTCCTTaGTGTCTGAAGTTCTTCTTATCTACAAAGTACTTCATGCCTTTG +
Preference number: 6 (lower is better)
Translates to: ATRKNSPCASPRLPP*CLKFFLSTKYFMPL
Trigger: CAAAGGCATGAAGTACTTTGTAGATAAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTTCCTGGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp CGCCTTGCGCCTCGCCGCGGCTGCCTCCTTTGTGTCTaGAGTTCTTCTTATCTACAAAGTACTTCATGCCTT +
Preference number: 6 (lower is better)
Translates to: RLAPRRGCLLCV*SSSYLQSTSCL
Trigger: AAGGCATGAAGTACTTTGTAGATAAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp GGGGCATGGTCGAAGGACACGTGCATGTCAGAACCATaGTGGCTGATATTCAGGTTTCGAGGCTTCCAGAAA +
Preference number: 6 (lower is better)
Translates to: GAWSKDTCMSEP*WLIFRFRGFQK
Trigger: TTTCTGGAAGCCTCGAAACCTGAATATCAGCCAGCATGGTTCTGACATGCACGTGTCCTTCGACCATGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp AAGCCGAAGTTCTGCGGGGCATGGTCGAAGGACACGTaGATGTCAGAACCATGCTGGCTGATATTCAGGTTT +
Preference number: 6 (lower is better)
Translates to: KPKFCGAWSKDT*MSEPCWLIFRF
Trigger: AAACCTGAATATCAGCCAGCATGGTTCTGACATGCACGTGTCCTTCGACCATGCCCCGCAGAACTTCGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 72 bp TATAGTCCCCTGGAGAAACGTTTTGGAGGAGGCAGCTaGTTGTCTCTGTATTCTGGTCCTGCCTGCAAGTCC +
Preference number: 6 (lower is better)
Translates to: YSPLEKRFGGGS*LSLYSGPACKS
Trigger: GGACTTGCAGGCAGGACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp GCTGTCATCCACCAGCTCAATGATATAGTCCCCTGGAGAAACGTTTaGGAGGAGGCAGCTGGTTGTCTCTGTATTCTGGTCCTGCCTGCA +
Preference number: 6 (lower is better)
Translates to: AVIHQLNDIVPWRNV*EEAAGCLCILVLPA
Trigger: TGCAGGCAGGACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATATCATTGAGCTGGTGGATGACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp TGCTTCTCAAACCAGTCAGGCTCCTCATCAATAAACTGGTGCATGTaGCAAATGGCAACATACAGGGAGCGGCCCGATTTGCTCCGGAAG +
Preference number: 6 (lower is better)
Translates to: CFSNQSGSSSINWCM*QMATYRERPDLLRK
Trigger: CTTCCGGAGCAAATCGGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAGCCTGACTGGTTTGAGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp GTCAAATTTCTCCAGGACTGGCTCCTGGTAACGCACAGGGGGATGTaGGAAGGGTATAAACTGCTTCTCAAACCAGTCAGGCTCCTCATC +
Preference number: 6 (lower is better)
Translates to: VKFLQDWLLVTHRGM*EGYKLLLKPVRLLI
Trigger: GATGAGGAGCCTGACTGGTTTGAGAAGCAGTTTATACCCTTCCAACATCCCCCTGTGCGTTACCAGGAGCCAGTCCTGGAGAAATTTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CCA 72 bp GTTGCTGTCATCCACCAGCTCAATGATATAGTCCCCTaGAGAAACGTTTTGGAGGAGGCAGCTGGTTGTCTC +
Preference number: 6 (lower is better)
Translates to: VAVIHQLNDIVP*RNVLEEAAGCL
Trigger: GAGACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATATCATTGAGCTGGTGGATGACAGCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp CCACAAGTCCAGAGCCACCTCACAGCCACAGAAATCTaGCAGGAAATAGGCGAAACACTGGACCACGTTCAT +
Preference number: 6 (lower is better)
Translates to: PQVQSHLTATEI*QEIGETLDHVH
Trigger: ATGAACGTGGTCCAGTGTTTCGCCTATTTCCTGCAAGATTTCTGTGGCTGTGAGGTGGCTCTGGACTTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp AAGAACTCGCCTTGCGCCTCGCCGCGGCTGCCTCCTTaGTGTCTGAAGTTCTTCTTATCTACAAAGTACTTC +
Preference number: 6 (lower is better)
Translates to: KNSPCASPRLPP*CLKFFLSTKYF
Trigger: GAAGTACTTTGTAGATAAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCGAGGCGCAAGGCGAGTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp TTCTCAAACCAGTCAGGCTCCTCATCAATAAACTGGTaGATGTTGCAAATGGCAACATACAGGGAGCGGCCC +
Preference number: 6 (lower is better)
Translates to: FSNQSGSSSINW*MLQMATYRERP
Trigger: GGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAGCCTGACTGGTTTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp TCCATTCCAGTCCTTCTGAAGCTGCTGTTGAGCTGTTaGGGGTCCTTTAGAATCAGCTGTTGGCACTGTCTG +
Preference number: 6 (lower is better)
Translates to: SIPVLLKLLLSC*GSFRISCWHCL
Trigger: CAGACAGTGCCAACAGCTGATTCTAAAGGACCCCAAACAGCTCAACAGCAGCTTCAGAAGGACTGGAATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035336.5
CDS CAA 72 bp CACCAGCTCAATGATATAGTCCCCTGGAGAAACGTTTaGGAGGAGGCAGCTGGTTGTCTCTGTATTCTGGTC +
Preference number: 6 (lower is better)
Translates to: HQLNDIVPWRNV*EEAAGCLCILV
Trigger: GACCAGAATACAGAGACAACCAGCTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATATCATTGAGCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp AACCAGTCAGGCTCCTCATCAATAAACTGGTGCATGTaGCAAATGGCAACATACAGGGAGCGGCCCGATTTG +
Preference number: 6 (lower is better)
Translates to: NQSGSSSINWCM*QMATYRERPDL
Trigger: CAAATCGGGCCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAGCCTGACTGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS GCA 72 bp TTGTTGCTTCTTTCTGCACATCACAGTGAACAGGGTTaGGAACGCAGATATGACAACCAGAGGCACAGTGAT +
Preference number: 6 (lower is better)
Translates to: LLLLSAHHSEQG*ERRYDNQRHSD
Trigger: ATCACTGTGCCTCTGGTTGTCATATCTGCGTTCGCAACCCTGTTCACTGTGATGTGCAGAAAGAAGCAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 90 bp ACACAAGCCTCGACTTTCCGACAGAAGTCACTCTCTGGCCCTGGTTaGCTTATGACATCATTTAAAACCAAGCCTGAGTCAAATTTCTCC +
Preference number: 6 (lower is better)
Translates to: TQASTFRQKSLSGPG*LMTSFKTKPESNFS
Trigger: GGAGAAATTTGACTCAGGCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGTCGGAAAGTCGAGGCTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS CAA 72 bp TCGACTTTCCGACAGAAGTCACTCTCTGGCCCTGGTTaGCTTATGACATCATTTAAAACCAAGCCTGAGTCA +
Preference number: 6 (lower is better)
Translates to: STFRQKSLSGPG*LMTSFKTKPES
Trigger: TGACTCAGGCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGTCGGAAAGTCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2
CDS TCA 72 bp TCCGACAGAAGTCACTCTCTGGCCCTGGTTTGCTTATaGCATCATTTAAAACCAAGCCTGAGTCAAATTTCT +
Preference number: 6 (lower is better)
Translates to: SDRSHSLALVCL*HHLKPSLSQIS
Trigger: AGAAATTTGACTCAGGCTTGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGTCGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035336.5
ENSMUST00000225146.2
ENSMUST00000226105.2