Pregenerated sensors for IL17A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025929Ensembl transcript IDs: ENSMUST00000027061.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCATCGAGGCCACGCAGGTaGAGCCCACACCCACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: QTRSSLGPLYTFFSLWRASRPRR*SPHPPA Trigger: TGCTGGTGGGTGTGGGCTGCACCTGCGTGGCCTCGA...TGCCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR TCA 90 bp | AACAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCGCTGGTGGCGGCACTaGGCTTCCCAGATCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: NKHEAVWDPFTPSFHCGGRWWRH*ASQITE Trigger: CTCTGTGATCTGGGAAGCTCAGTGCCGCCACCAGCG...CCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR TCA 90 bp | AACAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGACGGTTGAGGTAGTCTaGGGGCCTTCTGGAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: NKHEAVWDPFTPSFHCGGTVEVV*GPSGAH Trigger: GTGAGCTCCAGAAGGCCCTCAGACTACCTCAACCGT...CCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR TCA 90 bp | AACAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGGTGGAGAGTCCAGGGTaGCGTGGAACGGTTGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: NKHEAVWDPFTPSFHCGGVESPG*RGTVEV Trigger: TACCTCAACCGTTCCACGTCACCCTGGACTCTCCAC...CCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR GCA 90 bp | CAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCATATCAGGGTCTTCATTaGGGTGGAGAGTCCAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: QTRSSLGPLYTFFSLWRAYQGLH*GGESRV Trigger: CACCCTGGACTCTCCACCGCAATGAAGACCCTGATA...TGCCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR TCA 90 bp | AACAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGAGTGTTTGGACACGCTaGGCTTTGAGGGATGATCGC | + |
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Preference number: 4 (lower is better) Translates to: NKHEAVWDPFTPSFHCGGSVWTR*ALRDDR Trigger: GCGATCATCCCTCAAAGCTCAGCGTGTCCAAACACT...CCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR CCA 90 bp | CCCTTTACACCTTCTTTTCATTGTGGAGGGCAGACAATTCTGAATCTGCCTCTGTCTGGAGGAAGTCCTTaGCCTCAGTGTTTGGACACG | + |
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Preference number: 4 (lower is better) Translates to: PFTPSFHCGGQTILNLPLSGGSP*PQCLDT Trigger: CGTGTCCAAACACTGAGGCCAAGGACTTCCTCCAGA...CAGAGGCAGATTCAGAATTGTCTGCCCTCCACAATGAAAAGAAGGTGTAAAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR GCA 90 bp | CAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCATCTGGAGCTCACTTTTaGGCCAAGGGAGTTAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: QTRSSLGPLYTFFSLWRASGAHF*AKGVKD Trigger: GTCTTTAACTCCCTTGGCGCAAAAGTGAGCTCCAGA...TGCCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR CCA 90 bp | CAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCATTGACCTTCACATTCTaGAGGAAGTCCTTGGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: QTRSSLGPLYTFFSLWRALTFTF*RKSLAS Trigger: TGAGGCCAAGGACTTCCTCCAGAATGTGAAGGTCAA...TGCCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR GCA 90 bp | AACAAACACGAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGAGGACCAGGATCTCTTaGTGGATGAGAACAGAATTC | + |
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Preference number: 4 (lower is better) Translates to: NKHEAVWDPFTPSFHCGGRTRIS*WMRTEF Trigger: GAATTCTGTTCTCATCCAGCAAGAGATCCTGGTCCT...CCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTCGTGTTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR TCA 90 bp | TGGTTTTCACCCCATTCAGAGGAGAGAACCTTAAATAAACAAATAGTAAAGCTGCATCAGAGACACAGATaGAGCTCTCCCTGGACTCAT | + |
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Preference number: 4 (lower is better) Translates to: WFSPHSEERTLNKQIVKLHQRHR*SSPWTH Trigger: ATGAGTCCAGGGAGAGCTTCATCTGTGTCTCTGATG...CAGCTTTACTATTTGTTTATTTAAGGTTCTCTCCTCTGAATGGGGTGAAAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR CCA 90 bp | TGGTTTTCACCCCATTCAGAGGAGAGAACCTTAAATAAACAAATAGTAAAGCTGACAGAATTCATGTGGTaGTCCAGCTTTCCCTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: WFSPHSEERTLNKQIVKLTEFMW*SSFPSA Trigger: TGCGGAGGGAAAGCTGGACCACCACATGAATTCTGT...CAGCTTTACTATTTGTTTATTTAAGGTTCTCTCCTCTGAATGGGGTGAAAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 90 bp | TTCTGGAGGAAGTCCTTGGCCTCAGTGTTTGGACACGCTGAGCTTTaGGGGATGATCGCTGCTGCCTTCACTGTAGCCGCCAGGCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: FWRKSLASVFGHAEL*GMIAAAFTVAARLS Trigger: GCTGAGCCTGGCGGCTACAGTGAAGGCAGCAGCGATCATCCCTCAAAGCTCAGCGTGTCCAAACACTGAGGCCAAGGACTTCCTCCAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 90 bp | CTTCACATTCTGGAGGAAGTCCTTGGCCTCAGTGTTTGGACACGCTaGGCTTTGAGGGATGATCGCTGCTGCCTTCACTGTAGCCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: LHILEEVLGLSVWTR*ALRDDRCCLHCSRQ Trigger: CTGGCGGCTACAGTGAAGGCAGCAGCGATCATCCCTCAAAGCTCAGCGTGTCCAAACACTGAGGCCAAGGACTTCCTCCAGAATGTGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 90 bp | TGGTCCAGCTTTCCCTCCGCATTGACACAGCGCTGGTGGCGGCACTaGGCTTCCCAGATCACAGAGGGATATCTATCAGGGTCTTCATTG | + |
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Preference number: 5 (lower is better) Translates to: WSSFPSALTQRWWRH*ASQITEGYLSGSSL Trigger: CAATGAAGACCCTGATAGATATCCCTCTGTGATCTGGGAAGCTCAGTGCCGCCACCAGCGCTGTGTCAATGCGGAGGGAAAGCTGGACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR CAA 90 bp | GAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCAGACAATTTTAAAGACTTTGAGGTaGACCTTCACATTCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: EAVWDPFTPSFHCGGQTILKTLR*TFTFWR Trigger: CCTCCAGAATGTGAAGGTCAACCTCAAAGTCTTTAA...AATTGTCTGCCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR CAA 90 bp | GAAGCAGTTTGGGACCCCTTTACACCTTCTTTTCATTGTGGAGGGCAGACAATTAGGGAGTTAAAGACTTaGAGGTTGACCTTCACATTC | + |
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Preference number: 5 (lower is better) Translates to: EAVWDPFTPSFHCGGQTIRELKT*RLTFTF Trigger: GAATGTGAAGGTCAACCTCAAAGTCTTTAACTCCCT...AATTGTCTGCCCTCCACAATGAAAAGAAGGTGTAAAGGGGTCCCAAACTGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS-3UTR CAA 90 bp | TGGTTTTCACCCCATTCAGAGGAGAGAACCTTAAATAAACAAATAGTAAAGCTGCAGGACCAGGATCTCTaGCTGGATGAGAACAGAATT | + |
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Preference number: 5 (lower is better) Translates to: WFSPHSEERTLNKQIVKLQDQDL*LDENRI Trigger: AATTCTGTTCTCATCCAGCAAGAGATCCTGGTCCTG...CAGCTTTACTATTTGTTTATTTAAGGTTCTCTCCTCTGAATGGGGTGAAAACCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 72 bp | CAGAATTCATGTGGTGGTCCAGCTTTCCCTCCGCATTaGCACAGCGCTGGTGGCGGCACTGAGCTTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: QNSCGGPAFPPH*HSAGGGTELPR Trigger: TCTGGGAAGCTCAGTGCCGCCACCAGCGCTGTGTCAATGCGGAGGGAAAGCTGGACCACCACATGAATTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 72 bp | CATTGCGGTGGAGAGTCCAGGGTGACGTGGAACGGTTaGGGTAGTCTGAGGGCCTTCTGGAGCTCACTTTTG | + |
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Preference number: 6 (lower is better) Translates to: HCGGESRVTWNG*GSLRAFWSSLL Trigger: CAAAAGTGAGCTCCAGAAGGCCCTCAGACTACCTCAACCGTTCCACGTCACCCTGGACTCTCCACCGCAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 72 bp | TTTCCCTCCGCATTGACACAGCGCTGGTGGCGGCACTaGGCTTCCCAGATCACAGAGGGATATCTATCAGGG | + |
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Preference number: 6 (lower is better) Translates to: FPSALTQRWWRH*ASQITEGYLSG Trigger: CCCTGATAGATATCCCTCTGTGATCTGGGAAGCTCAGTGCCGCCACCAGCGCTGTGTCAATGCGGAGGGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS TCA 72 bp | CTGGAGGAAGTCCTTGGCCTCAGTGTTTGGACACGCTaGGCTTTGAGGGATGATCGCTGCTGCCTTCACTGT | + |
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Preference number: 6 (lower is better) Translates to: LEEVLGLSVWTR*ALRDDRCCLHC Trigger: ACAGTGAAGGCAGCAGCGATCATCCCTCAAAGCTCAGCGTGTCCAAACACTGAGGCCAAGGACTTCCTCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS CAA 90 bp | CTTCTGGAGCTCACTTTTGCGCCAAGGGAGTTAAAGACTTTGAGGTaGACCTTCACATTCTGGAGGAAGTCCTTGGCCTCAGTGTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: LLELTFAPRELKTLR*TFTFWRKSLASVFG Trigger: TCCAAACACTGAGGCCAAGGACTTCCTCCAGAATGTGAAGGTCAACCTCAAAGTCTTTAACTCCCTTGGCGCAAAAGTGAGCTCCAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS CCA 72 bp | AGGGAGTTAAAGACTTTGAGGTTGACCTTCACATTCTaGAGGAAGTCCTTGGCCTCAGTGTTTGGACACGCT | + |
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Preference number: 6 (lower is better) Translates to: RELKTLRLTFTF*RKSLASVFGHA Trigger: AGCGTGTCCAAACACTGAGGCCAAGGACTTCCTCCAGAATGTGAAGGTCAACCTCAAAGTCTTTAACTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS CAA 72 bp | CTCACTTTTGCGCCAAGGGAGTTAAAGACTTTGAGGTaGACCTTCACATTCTGGAGGAAGTCCTTGGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: LTFAPRELKTLR*TFTFWRKSLAS Trigger: TGAGGCCAAGGACTTCCTCCAGAATGTGAAGGTCAACCTCAAAGTCTTTAACTCCCTTGGCGCAAAAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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| CDS CAA 72 bp | CTGGAGCTCACTTTTGCGCCAAGGGAGTTAAAGACTTaGAGGTTGACCTTCACATTCTGGAGGAAGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: LELTFAPRELKT*RLTFTFWRKSL Trigger: CAAGGACTTCCTCCAGAATGTGAAGGTCAACCTCAAAGTCTTTAACTCCCTTGGCGCAAAAGTGAGCTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027061.5 |
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