Pregenerated sensors for IL15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031712Ensembl transcript IDs: ENSMUST00000034148.7, ENSMUST00000209363.2, ENSMUST00000209573.3, ENSMUST00000210094.2, ENSMUST00000211565.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGGTGGAGGTACCTTAATAACAGAAACACGGAAGAGGCTCGCATaGAGTCAGGACGTGTTGATGAACATTTGGACAATGCGTATAAAG | + |
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Preference number: 1 (lower is better) Translates to: AGGGTLITETRKRLA*SQDVLMNIWTMRIK Trigger: CTTTATACGCATTGTCCAAATGTTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGTTATTAAGGTACCTCCACCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGAAACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTTGATGAACATTTGGCCAGCAGATTTCAAATaGATGGAGCTGTGCTGCCTC | + |
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Preference number: 2 (lower is better) Translates to: TETRKRLACSQDVLMNIWPADFK*MELCCL Trigger: GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGG...CCAAATGTTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR GCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCCCAGCAGATTTCAAATaGATGGAGCTGTGCTGCCTC | + |
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Preference number: 2 (lower is better) Translates to: LGSLVCPADFKCMELCCLPADFK*MELCCL Trigger: GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGG...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR CAA 90 bp | CATGTGATCCAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTaGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: HVIQVAHYLLVRKLS*PSRFQMHGAVLPLS Trigger: GCTCAGAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTGGATCACATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR-3UTR CCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCCCTCTGAGCAGCAGGTaGAGGTACCTTAATAACAGA | + |
|
Preference number: 2 (lower is better) Translates to: LGSLVCPADFKCMELCCLPLSSR*RYLNNR Trigger: TCTGTTATTAAGGTACCTCCACCTGCTGCTCAGAGG...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR CAA 90 bp | TGCAAAAACTCTGTGAAGGTTTTCTCCTCCAGCTCCTCACATTCCTaGCAGCCAGATTCTGCTACATTCTTGTTAGAAGACAGAGTGCTG | + |
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Preference number: 2 (lower is better) Translates to: CKNSVKVFSSSSSHS*QPDSATFLLEDRVL Trigger: CAGCACTCTGTCTTCTAACAAGAATGTAGCAGAATCTGGCTGCAAGGAATGTGAGGAGCTGGAGGAGAAAACCTTCACAGAGTTTTTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCCCTCTGAGCAGCAGGTaGAGGTACCTTAATAACAGA | + |
|
Preference number: 2 (lower is better) Translates to: SKWLIISLLGSLVCPADFPLSSR*RYLNNR Trigger: TCTGTTATTAAGGTACCTCCACCTGCTGCTCAGAGG...GAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR-3UTR CCA 90 bp | TTGCAGCCAGATTCTGCTACATTCTTGTTAGAAGACAGAGTGCTGTTTGCAAGGCCTCTGAGCAGCAGGTaGAGGTACCTTAATAACAGA | + |
|
Preference number: 2 (lower is better) Translates to: LQPDSATFLLEDRVLFARPLSSR*RYLNNR Trigger: TCTGTTATTAAGGTACCTCCACCTGCTGCTCAGAGG...CCTTGCAAACAGCACTCTGTCTTCTAACAAGAATGTAGCAGAATCTGGCTGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCTTCCAAGATTTCATGTaGTCCAAGTGGCTCATTATC | + |
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Preference number: 2 (lower is better) Translates to: LGSLVCPADFKCMELCCLFQDFM*SKWLII Trigger: GATAATGAGCCACTTGGATCACATGAAATCTTGGAA...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR-3UTR GCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCTTAGGAAGCTTAGTTTaGCCAGCAGATTTCAAATGC | + |
|
Preference number: 2 (lower is better) Translates to: LGSLVCPADFKCMELCCLLGSLV*PADFKC Trigger: GCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR CAA 90 bp | CAGTCAGGACGTGTTGATGAACATTTGGACAATGCGTATAAAGCTTaGCAAAAACTCTGTGAAGGTTTTCTCCTCCAGCTCCTCACATTC | + |
|
Preference number: 2 (lower is better) Translates to: QSGRVDEHLDNAYKA*QKLCEGFLLQLLTF Trigger: GAATGTGAGGAGCTGGAGGAGAAAACCTTCACAGAGTTTTTGCAAAGCTTTATACGCATTGTCCAAATGTTCATCAACACGTCCTGACTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR CAA 90 bp | AACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTTGATGAACATTaGGACAATGCGTATAAAGCTTTGCAAAAACTCTGTGAAGGTTTT | + |
|
Preference number: 2 (lower is better) Translates to: NTEEARMQSGRVDEH*DNAYKALQKLCEGF Trigger: AAAACCTTCACAGAGTTTTTGCAAAGCTTTATACGCATTGTCCAAATGTTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR TCA 90 bp | CTTAATAACAGAAACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTTGATGAATTCCAAGATTTCATGTaGTCCAAGTGGCTCATTATC | + |
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Preference number: 2 (lower is better) Translates to: LNNRNTEEARMQSGRVDEFQDFM*SKWLII Trigger: GATAATGAGCCACTTGGATCACATGAAATCTTGGAA...TTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGTTATTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAATAACAGAAACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTTGATGAATTAGGAAGCTTAGTTTaGCCAGCAGATTTCAAATGC | + |
|
Preference number: 2 (lower is better) Translates to: LNNRNTEEARMQSGRVDELGSLV*PADFKC Trigger: GCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA...TTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGTTATTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR GCA 90 bp | CTTAATAACAGAAACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTTGATGAACTTGCAGCCAGATTCTaGTACATTCTTGTTAGAAGA | + |
|
Preference number: 2 (lower is better) Translates to: LNNRNTEEARMQSGRVDELAARF*YILVRR Trigger: TCTTCTAACAAGAATGTAGCAGAATCTGGCTGCAAG...TTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGTTATTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR GCA 72 bp | CTCCTCCAGCTCCTCACATTCCTTGCAGCCAGATTCTaGTACATTCTTGTTAGAAGACAGAGTGCTGTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: LLQLLTFLAARF*YILVRRQSAVC Trigger: GCAAACAGCACTCTGTCTTCTAACAAGAATGTAGCAGAATCTGGCTGCAAGGAATGTGAGGAGCTGGAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR GCA 72 bp | AAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTTaGCCAGCAGATTTCAAATGCATGGAGCTGTGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: KWLIISLLGSLV*PADFKCMELCC Trigger: GCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| 3UTR GCA 72 bp | GGTACCTTAATAACAGAAACACGGAAGAGGCTCGCATaGAGTCAGGACGTGTTGATGAACATTTGGACAATG | + |
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Preference number: 3 (lower is better) Translates to: GTLITETRKRLA*SQDVLMNIWTM Trigger: CATTGTCCAAATGTTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGTTATTAAGGTACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR CAA 90 bp | TCCAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCCTTACATCTATCCAGTaGGCCTCTGTTTTAGGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: SKWLIISLLGSLVCPADFLTSIQ*ASVLGR Trigger: TCTCCCTAAAACAGAGGCCAACTGGATAGATGTAAG...GAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR-3UTR CAA 90 bp | AATGCGTATAAAGCTTTGCAAAAACTCTGTGAAGGTTTTCTCCTCCAGCTCCTCGATTCTGCTACATTCTaGTTAGAAGACAGAGTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: NAYKALQKLCEGFLLQLLDSATF*LEDRVL Trigger: CAGCACTCTGTCTTCTAACAAGAATGTAGCAGAATC...GAGGAGCTGGAGGAGAAAACCTTCACAGAGTTTTTGCAAAGCTTTATACGCATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR GCA 72 bp | TTCTGCTACATTCTTGTTAGAAGACAGAGTGCTGTTTaGAAGGTAGAGCACGTTTCTTACTGTTTCATTAAG | + |
|
Preference number: 3 (lower is better) Translates to: FCYILVRRQSAV*KVEHVSYCFIK Trigger: CTTAATGAAACAGTAAGAAACGTGCTCTACCTTGCAAACAGCACTCTGTCTTCTAACAAGAATGTAGCAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| CDS-3UTR GCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCGCTCCTCACATTCCTTaGAGCCAGATTCTGCTACAT | + |
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Preference number: 4 (lower is better) Translates to: LGSLVCPADFKCMELCCLAPHIP*SQILLH Trigger: ATGTAGCAGAATCTGGCTGCAAGGAATGTGAGGAGC...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| 3UTR CAA 72 bp | GAAACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTaGATGAACATTTGGACAATGCGTATAAAGCTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: ETRKRLACSQDV*MNIWTMRIKLC Trigger: GCAAAGCTTTATACGCATTGTCCAAATGTTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| CDS-3UTR TCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCCCCAAAATGAAGACATaGATGCCAGCCTCAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: LGSLVCPADFKCMELCCLPKMKT*MPASVK Trigger: TTTAACTGAGGCTGGCATTCATGTCTTCATTTTGGG...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| CDS-3UTR TCA 90 bp | AACAGAAACACGGAAGAGGCTCGCATGCAGTCAGGACGTGTTGATGAACATTTGCCCAAAATGAAGACATaGATGCCAGCCTCAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: NRNTEEARMQSGRVDEHLPKMKT*MPASVK Trigger: TTTAACTGAGGCTGGCATTCATGTCTTCATTTTGGG...CAAATGTTCATCAACACGTCCTGACTGCATGCGAGCCTCTTCCGTGTTTCTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR CAA 72 bp | CAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTaGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: QVAHYLLVRKLS*PSRFQMHGAVL Trigger: CAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| CDS-3UTR TCA 90 bp | TCCAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCCCCAAAATGAAGACATaGATGCCAGCCTCAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: SKWLIISLLGSLVCPADFPKMKT*MPASVK Trigger: TTTAACTGAGGCTGGCATTCATGTCTTCATTTTGGG...GAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| CDS-3UTR GCA 90 bp | TCCAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCGAGAAAGCAGTTCATTaGAGTAACTTTGCAACTGGG | + |
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Preference number: 4 (lower is better) Translates to: SKWLIISLLGSLVCPADFEKAVH*SNFATG Trigger: CCCAGTTGCAAAGTTACTGCAATGAACTGCTTTCTC...GAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR GCA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCTCATGTAAAATAACCTaGAATTCCAGGAGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LGSLVCPADFKCMELCCLSCKIT*NSRRKQ Trigger: CTGCTTTCTCCTGGAATTGCAGGTTATTTTACATGA...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR GCA 90 bp | TCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCCTTGCAGCCAGATTCTaGTACATTCTTGTTAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SLLGSLVCPADFKCMELCLAARF*YILVRR Trigger: TCTTCTAACAAGAATGTAGCAGAATCTGGCTGCAAG...GCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR GCA 90 bp | CTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGCTCCTCACATTCCTTaGAGCCAGATTCTGCTACAT | + |
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Preference number: 4 (lower is better) Translates to: LIISLLGSLVCPADFKCMAPHIP*SQILLH Trigger: ATGTAGCAGAATCTGGCTGCAAGGAATGTGAGGAGC...CATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR GCA 90 bp | ATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGGCTCCTCACATTCCTTaGAGCCAGATTCTGCTACAT | + |
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Preference number: 4 (lower is better) Translates to: IISLLGSLVCPADFKCMEAPHIP*SQILLH Trigger: ATGTAGCAGAATCTGGCTGCAAGGAATGTGAGGAGC...CTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| 3UTR CAA 72 bp | TCAATTTTCTCCAGGTCATATCTTACATCTATCCAGTaGGCCTCTGTTTTAGGGAGACCTACACTGACACAG | + |
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Preference number: 4 (lower is better) Translates to: SIFSRSYLTSIQ*ASVLGRPTLTQ Trigger: CTGTGTCAGTGTAGGTCTCCCTAAAACAGAGGCCAACTGGATAGATGTAAGATATGACCTGGAGAAAATTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| 3UTR CAA 72 bp | CGTGTTGATGAACATTTGGACAATGCGTATAAAGCTTaGCAAAAACTCTGTGAAGGTTTTCTCCTCCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RVDEHLDNAYKA*QKLCEGFLLQL Trigger: GAGCTGGAGGAGAAAACCTTCACAGAGTTTTTGCAAAGCTTTATACGCATTGTCCAAATGTTCATCAACACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| CDS-3UTR TCA 90 bp | ATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCCCAAAATGAAGACATaGATGCCAGCCTCAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: IISLLGSLVCPADFKCMEPKMKT*MPASVK Trigger: TTTAACTGAGGCTGGCATTCATGTCTTCATTTTGGG...CTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000211565.2 |
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| CDS-3UTR TCA 90 bp | CTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGCAGTTATTCCCAAAATaGAGACATGAATGCCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LIISLLGSLVCPADFKCMQLFPK*RHECQP Trigger: AGGCTGGCATTCATGTCTTCATTTTGGGAATAACTG...CATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211565.2 |
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| CDS-3UTR GCA 90 bp | ATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGTCATGTAAAATAACCTaGAATTCCAGGAGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: IISLLGSLVCPADFKCMESCKIT*NSRRKQ Trigger: CTGCTTTCTCCTGGAATTGCAGGTTATTTTACATGA...CTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR GCA 90 bp | CTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGTCATGTAAAATAACCTaGAATTCCAGGAGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LIISLLGSLVCPADFKCMSCKIT*NSRRKQ Trigger: CTGCTTTCTCCTGGAATTGCAGGTTATTTTACATGA...CATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR CAA 90 bp | CATGTGATCCAAGTGGCTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCCTTACATCTATCCAGTaGGCCTCTGTTTTAGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: HVIQVAHYLLVRKLSLPSLTSIQ*ASVLGR Trigger: TCTCCCTAAAACAGAGGCCAACTGGATAGATGTAAG...GCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAGCCACTTGGATCACATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR CAA 90 bp | TTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCTGTGCTGCCTCGATTCTGCTACATTCTaGTTAGAAGACAGAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LGSLVCPADFKCMELCCLDSATF*LEDRVL Trigger: CAGCACTCTGTCTTCTAACAAGAATGTAGCAGAATC...GAGGCAGCACAGCTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR CAA 90 bp | CTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGATTCTGCTACATTCTaGTTAGAAGACAGAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LIISLLGSLVCPADFKCMDSATF*LEDRVL Trigger: CAGCACTCTGTCTTCTAACAAGAATGTAGCAGAATC...CATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR CAA 90 bp | ATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGGAGCGTGTTGATGAACATTaGGACAATGCGTATAAAGCT | + |
|
Preference number: 5 (lower is better) Translates to: IISLLGSLVCPADFKCMERVDEH*DNAYKA Trigger: AGCTTTATACGCATTGTCCAAATGTTCATCAACACG...CTCCATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS-3UTR CAA 90 bp | CTCATTATCTCCTTGTTAGGAAGCTTAGTTTGCCCAGCAGATTTCAAATGCATGCGTGTTGATGAACATTaGGACAATGCGTATAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: LIISLLGSLVCPADFKCMRVDEH*DNAYKA Trigger: AGCTTTATACGCATTGTCCAAATGTTCATCAACACG...CATGCATTTGAAATCTGCTGGGCAAACTAAGCTTCCTAACAAGGAGATAATGAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS GCA 90 bp | ACTGTTTCATTAAGAGTCATGTTACTGTACTCATGTAAAATAACCTaGAATTCCAGGAGAAAGCAGTTCATTGCAGTAACTTTGCAACTG | + |
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Preference number: 5 (lower is better) Translates to: TVSLRVMLLYSCKIT*NSRRKQFIAVTLQL Trigger: CAGTTGCAAAGTTACTGCAATGAACTGCTTTCTCCTGGAATTGCAGGTTATTTTACATGAGTACAGTAACATGACTCTTAATGAAACAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS TCA 72 bp | AGAAAGCAGTTCATTGCAGTAACTTTGCAACTGGGATaGAAGTCACTGTCAGTGTATAAAGTGGTGTCAATA | + |
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Preference number: 6 (lower is better) Translates to: RKQFIAVTLQLG*KSLSVYKVVSI Trigger: TATTGACACCACTTTATACACTGACAGTGACTTTCATCCCAGTTGCAAAGTTACTGCAATGAACTGCTTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS GCA 72 bp | TTAAGAGTCATGTTACTGTACTCATGTAAAATAACCTaGAATTCCAGGAGAAAGCAGTTCATTGCAGTAACT | + |
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Preference number: 6 (lower is better) Translates to: LRVMLLYSCKIT*NSRRKQFIAVT Trigger: AGTTACTGCAATGAACTGCTTTCTCCTGGAATTGCAGGTTATTTTACATGAGTACAGTAACATGACTCTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 |
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| CDS CCA 72 bp | AGTGACTGTTTAGAAGGAAACACAAGTAGCACGAGATaGATGTATTCCTCATATATGGTTTCAAAATTTTCA | + |
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Preference number: 6 (lower is better) Translates to: SDCLEGNTSSTR*MYSSYMVSKFS Trigger: TGAAAATTTTGAAACCATATATGAGGAATACATCCATCTCGTGCTACTTGTGTTTCCTTCTAAACAGTCACT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000034148.7 ENSMUST00000209363.2 ENSMUST00000209573.3 ENSMUST00000210094.2 ENSMUST00000211565.2 |
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