Pregenerated sensors for IL11RA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078735Ensembl transcript IDs: ENSMUST00000108006.4, ENSMUST00000238770.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACACACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTaGACTTCCACCTCAGGACATCAGAAGTCCAGACAGCCTTCAGCC | + |
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Preference number: 1 (lower is better) Translates to: HTRSQEHRLLYTFLR*TSTSGHQKSRQPSA Trigger: GGCTGAAGGCTGTCTGGACTTCTGATGTCCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGTGTGTG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| 3UTR CCA 90 bp | CTCAGGACATCAGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTaGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTCCAGCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: LRTSEVQTAFSRQQV*SIGVKEKSSDFQLR Trigger: TCTCAGCTGGAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCTGATGTCCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| 3UTR-3UTR TCA 90 bp | TCAGGTGGACTTCCACCTCAGGACATCAGAAGTCCAGACAGCCTTCAGCCGGCAGCTCAGACTTCCAGCTaGGACCTCCATCCACAGGGA | + |
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Preference number: 2 (lower is better) Translates to: SGGLPPQDIRSPDSLQPAAQTSS*DLHPQG Trigger: TCCCTGTGGATGGAGGTCTCAGCTGGAAGTCTGAGC...TGCCGGCTGAAGGCTGTCTGGACTTCTGATGTCCTGAGGTGGAAGTCCACCTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| 3UTR CCA 72 bp | TCACAGGAACACAGACTTCTGTACACATTCCTCAGGTaGACTTCCACCTCAGGACATCAGAAGTCCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: SQEHRLLYTFLR*TSTSGHQKSRQ Trigger: CTGTCTGGACTTCTGATGTCCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| 3UTR CCA 72 bp | TCAGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTaGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTC | + |
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Preference number: 3 (lower is better) Translates to: SEVQTAFSRQQV*SIGVKEKSSDF Trigger: GAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTCCGTCTCTTTTATTTCAACTCTTCACACTCCCCAGAAGGGCCAAGCCCAAACATGCAGAGAACTTTaGCTCCCTGTCTCACATACA | + |
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Preference number: 3 (lower is better) Translates to: TSVSFISTLHTPQKGQAQTCREL*LPVSHT Trigger: TGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGT...TTGGGCTTGGCCCTTCTGGGGAGTGTGAAGAGTTGAAATAAAAGAGACGGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| 3UTR GCA 72 bp | CTCTCCAATCATGTGTACACACATGCAGAGAACTTTTaGTCCCTGTCTCACATACACACACGATCACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: LSNHVYTHAENF*SLSHIHTRSQE Trigger: TTCCTGTGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACACATGATTGGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR GCA 90 bp | TTCCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGCTGCAAGGAAGGCCTTaGAGGAGCCAGGCTGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: FQLRPPSTGIHCPASFCLLQGRP*RSQAVL Trigger: GAGGACAGCCTGGCTCCTGCAAGGCCTTCCTTGCAG...CAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR TCA 90 bp | ACTCCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGTGTACAGGGTGGGCAAACCGCTaGCCTGGCCTGGACTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: TPQKGQAQDRTHSPIMCTGWANR*PGLDSK Trigger: CTTGGAGTCCAGGCCAGGTCAGCGGTTTGCCCACCC...TGTACACATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR TCA 90 bp | TTCAACTCTTCACACTCCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCGGTCACCATGCCCCCTaGTACACCATCCAGGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: FNSSHSPEGPSPRPHTLSGHHAP*YTIQGL Trigger: CAGACCCTGGATGGTGTATCAGGGGGCATGGTGACC...GGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGGAGTGTGAAGAGTTGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR CCA 90 bp | CACTCCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGTGTACAAGTGGCCTTGGGTCTaGCTGCAAGGAAGGCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: HSPEGPSPRPHTLSNHVYKWPWV*LQGRPC Trigger: GCAAGGCCTTCCTTGCAGCCAGACCCAAGGCCACTT...GTACACATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR CCA 90 bp | CACTCCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGTGTACATCCCTGTGATCAAGTaGCCTTGGGTCTGGCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: HSPEGPSPRPHTLSNHVYIPVIK*PWVWLQ Trigger: TTGCAGCCAGACCCAAGGCCACTTGATCACAGGGAT...GTACACATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR GCA 90 bp | TCTTCACACTCCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATTCAGGTATCTCATCCTaGAGGAGACCAGTGCTAGGA | + |
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Preference number: 4 (lower is better) Translates to: SSHSPEGPSPRPHTLSNHSGISS*RRPVLG Trigger: TCCTAGCACTGGTCTCCTGCAGGATGAGATACCTGA...ATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGGAGTGTGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR GCA 90 bp | GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTCCAGCTGAGACCTCCATCCACGGCCTTGGGTCTGGCTaGAAGGAAGGCCTTGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: EYRCQRKELRLPAETSIHGLGSG*KEGLAG Trigger: TCCTGCAAGGCCTTCCTTGCAGCCAGACCCAAGGCC...GTGGATGGAGGTCTCAGCTGGAAGTCTGAGCTCTTTTCTTTGACACCTATACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR CCA 90 bp | GTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACTGACTCGTACCGCGTaGGGCAGCCCAGCCACAGTA | + |
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Preference number: 4 (lower is better) Translates to: VYTHAENFCSLSHIHTRSLTRTA*GSPATV Trigger: TACTGTGGCTGGGCTGCCCCACGCGGTACGAGTCAG...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR CCA 90 bp | CGCACACACTCTCCAATCATGTGTACACACATGCAGAGAACTTTTGCTCCCTGTCAGGGTATGTCCAGCTaGCATGCAGGCGTCTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: RTHSPIMCTHMQRTFAPCQGMSS*HAGVLG Trigger: ACCCAAGACGCCTGCATGCCAGCTGGACATACCCTG...ACAGGGAGCAAAAGTTCTCTGCATGTGTGTACACATGATTGGAGAGTGTGTGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR TCA 90 bp | CCAAGACCGCACACACTCTCCAATCATGTGTACACACATGCAGAGAACTTTTGCTCCCTGGAGCAGCCTTaGATCTCCATCCCGAAACCA | + |
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Preference number: 4 (lower is better) Translates to: PRPHTLSNHVYTHAENFCSLEQP*ISIPKP Trigger: TGGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGA...GCAAAAGTTCTCTGCATGTGTGTACACATGATTGGAGAGTGTGTGCGGTCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR TCA 90 bp | AAGACCGCACACACTCTCCAATCATGTGTACACACATGCAGAGAACTTTTGCTCGATGGACTTTCCCTCTaGCTCTCAGCTCCTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KTAHTLQSCVHTCRELLLDGLSL*LSAPGS Trigger: GCTGCCAGGAGCTGAGAGTCAGAGGGAAAGTCCATC...GAGCAAAAGTTCTCTGCATGTGTGTACACATGATTGGAGAGTGTGTGCGGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR CCA 90 bp | ACTTCCGTCTCTTTTATTTCAACTCTTCACACTCCCCAGAAGGGCCAAGCCCAAGTGATCAAGTGGCCTTaGGTCTGGCTGCAAGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: TSVSFISTLHTPQKGQAQVIKWP*VWLQGR Trigger: CCTTCCTTGCAGCCAGACCCAAGGCCACTTGATCAC...TTGGGCTTGGCCCTTCTGGGGAGTGTGAAGAGTTGAAATAAAAGAGACGGAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR GCA 90 bp | GTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCAACTACTGCCTCTAGCTaGTGTCCATGTCCCTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: VYTHAENFCSLSHIHTRSTTASS*CPCPWL Trigger: GAGCCAGGGACATGGACAGCAGCTAGAGGCAGTAGT...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR TCA 90 bp | TGTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCATTGCAACCGGAACTTaGGCAGAAAGTGGGGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: CVHTCRELLLPVSHTHTIIATGT*AESGVG Trigger: GCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAAT...GATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS-3UTR CCA 90 bp | CCAAGACCGCACACACTCTCCAATCATGTGTACACACATGCAGAGAACTTTTGCTGCTGTCCATGTCCCTaGCTCCAATCAGGTATCTCA | + |
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Preference number: 4 (lower is better) Translates to: PRPHTLSNHVYTHAENFCCCPCP*LQSGIS Trigger: TGAGATACCTGATTGGAGCCAGGGACATGGACAGCA...GCAAAAGTTCTCTGCATGTGTGTACACATGATTGGAGAGTGTGTGCGGTCTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS CCA 90 bp | CTCTGCCCCATGGACCACACATCGGGAGGCCTCCAGAGGGTCCTGTaGACACGGCCAAGGCCCGGTGGATGGACTTTCCCTCTGACTCTC | + |
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Preference number: 5 (lower is better) Translates to: LCPMDHTSGGLQRVL*TRPRPGGWTFPLTL Trigger: GAGAGTCAGAGGGAAAGTCCATCCACCGGGCCTTGGCCGTGTCCACAGGACCCTCTGGAGGCCTCCCGATGTGTGGTCCATGGGGCAGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | GGAGGCCTCCAGAGGGTCCTGTGGACACGGCCAAGGCCCGGTGGATaGACTTTCCCTCTGACTCTCAGCTCCTGGCAGCGTCTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: GGLQRVLWTRPRPGG*TFPLTLSSWQRLLP Trigger: AGGAAGAAGACGCTGCCAGGAGCTGAGAGTCAGAGGGAAAGTCCATCCACCGGGCCTTGGCCGTGTCCACAGGACCCTCTGGAGGCCTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | GCGACGCCAGGAGGCAGGGTATGTCCAGCTGGCATGCAGGCGTCTTaGGTAACCAGGTACGGATTCCACCCGCAGTCCTTGGGGTGGATC | + |
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Preference number: 5 (lower is better) Translates to: ATPGGRVCPAGMQAS*VTRYGFHPQSLGWI Trigger: GATCCACCCCAAGGACTGCGGGTGGAATCCGTACCTGGTTACCCAAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | GCAGAAAGTGGGGTTGGCGACGCCAGGAGGCAGGGTATGTCCAGCTaGCATGCAGGCGTCTTGGGTAACCAGGTACGGATTCCACCCGCA | + |
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Preference number: 5 (lower is better) Translates to: AESGVGDARRQGMSS*HAGVLGNQVRIPPA Trigger: TGCGGGTGGAATCCGTACCTGGTTACCCAAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | TATCTCATCCTGCAGGAGACCAGTGCTAGGAGTACCCCAGGCCTCTaGGCTCCAGGCGCTCCAGGTGCCAGCATCCAGAAAGTCCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: YLILQETSARSTPGL*APGAPGASIQKVPG Trigger: GCCAGGGACTTTCTGGATGCTGGCACCTGGAGCGCCTGGAGCCCAGAGGCCTGGGGTACTCCTAGCACTGGTCTCCTGCAGGATGAGATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS TCA 90 bp | GGGTCTGGCTGCAAGGAAGGCCTTGCAGGAGCCAGGCTGTCCTCCTaGGCTACTACTGCCTCTAGCTGCTGTCCATGTCCCTGGCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GSGCKEGLAGARLSS*ATTASSCCPCPWLQ Trigger: TTGGAGCCAGGGACATGGACAGCAGCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCTGGCTCCTGCAAGGCCTTCCTTGCAGCCAGACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | ACCTCGGTCACATTGATCCGGTACTCACTCCAGAACTCTGCCCCATaGACCACACATCGGGAGGCCTCCAGAGGGTCCTGTGGACACGGC | + |
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Preference number: 5 (lower is better) Translates to: TSVTLIRYSLQNSAP*TTHREASRGSCGHG Trigger: GCCGTGTCCACAGGACCCTCTGGAGGCCTCCCGATGTGTGGTCCATGGGGCAGAGTTCTGGAGTGAGTACCGGATCAATGTGACCGAGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | TGTGCTGGTCGGTATTGCAACCGGAACTTGAGCAGAAAGTGGGGTTaGCGACGCCAGGAGGCAGGGTATGTCCAGCTGGCATGCAGGCGT | + |
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Preference number: 5 (lower is better) Translates to: CAGRYCNRNLSRKWG*RRQEAGYVQLACRR Trigger: ACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | GGATGCTGTGCTGGTCGGTATTGCAACCGGAACTTGAGCAGAAAGTaGGGTTGGCGACGCCAGGAGGCAGGGTATGTCCAGCTGGCATGC | + |
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Preference number: 5 (lower is better) Translates to: GCCAGRYCNRNLSRK*GWRRQEAGYVQLAC Trigger: GCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | AGCTACTTGCTCCAAGGGATCCCTGTGATCAAGTGGCCTTGGGTCTaGCTGCAAGGAAGGCCTTGCAGGAGCCAGGCTGTCCTCCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: SYLLQGIPVIKWPWV*LQGRPCRSQAVLLS Trigger: GCTCAGGAGGACAGCCTGGCTCCTGCAAGGCCTTCCTTGCAGCCAGACCCAAGGCCACTTGATCACAGGGATCCCTTGGAGCAAGTAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS TCA 90 bp | AGGACGTGCTGGGGGAAAGCCCAGCTTCAGGGTCACCATGCCCCCTaGTACACCATCCAGGGTCTGGCAGACATAAGTGCCTTCATCAGG | + |
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Preference number: 5 (lower is better) Translates to: RTCWGKAQLQGHHAP*YTIQGLADISAFIR Trigger: CCTGATGAAGGCACTTATGTCTGCCAGACCCTGGATGGTGTATCAGGGGGCATGGTGACCCTGAAGCTGGGCTTTCCCCCAGCACGTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS TCA 90 bp | CCAGTAGGCACGTGCTGGCACCCAGTGGGTTCACCTCGGTCACATTaGTCCGGTACTCACTCCAGAACTCTGCCCCATGGACCACACATC | + |
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Preference number: 5 (lower is better) Translates to: PVGTCWHPVGSPRSH*SGTHSRTLPHGPHI Trigger: GATGTGTGGTCCATGGGGCAGAGTTCTGGAGTGAGTACCGGATCAATGTGACCGAGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS GCA 90 bp | GTACGGATTCCACCCGCAGTCCTTGGGGTGGATCGGGACGCAAGATaGTCTGTAATCTCACATCCAGTAGGCACGTGCTGGCACCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: VRIPPAVLGVDRDAR*SVISHPVGTCWHPV Trigger: CACTGGGTGCCAGCACGTGCCTACTGGATGTGAGATTACAGAGCATCTTGCGTCCCGATCCACCCCAAGGACTGCGGGTGGAATCCGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | CAGGTGCCAGCATCCAGAAAGTCCCTGGCACTGACTCGTACCGCGTaGGGCAGCCCAGCCACAGTATCTGTTATCACTTCCTCCAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: QVPASRKSLALTRTA*GSPATVSVITSSKP Trigger: TGGCTTGGAGGAAGTGATAACAGATACTGTGGCTGGGCTGCCCCACGCGGTACGAGTCAGTGCCAGGGACTTTCTGGATGCTGGCACCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | ACCTGGGCCAAGACCAGTCTGTGTCCTAACCCAGAGTCAGGTCCCTaGAGCAGCCTTGAATCTCCATCCCGAAACCAGGACACTGGAGTC | + |
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Preference number: 5 (lower is better) Translates to: TWAKTSLCPNPESGP*SSLESPSRNQDTGV Trigger: GACTCCAGTGTCCTGGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGGGTTAGGACACAGACTGGTCTTGGCCCAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | CCACAGTATCTGTTATCACTTCCTCCAAGCCAATGGGCTCCACCGTaGACCAGGCTGGATGCTGTGCTGGTCGGTATTGCAACCGGAACT | + |
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Preference number: 5 (lower is better) Translates to: PQYLLSLPPSQWAPP*TRLDAVLVGIATGT Trigger: AGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTGGCTTGGAGGAAGTGATAACAGATACTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS-3UTR CAA 90 bp | ACTCCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGTGTACATGTGATCAAGTGGCCTaGGGTCTGGCTGCAAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: TPQKGQAQDRTHSPIMCTCDQVA*GLAARK Trigger: CTTCCTTGCAGCCAGACCCAAGGCCACTTGATCACA...TGTACACATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238770.2 |
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| CDS TCA 90 bp | ATTCCCAGAGATGCTAACACAGCTACTTGCTCCAAGGGATCCCTGTaGTCAAGTGGCCTTGGGTCTGGCTGCAAGGAAGGCCTTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: IPRDANTATCSKGSL*SSGLGSGCKEGLAG Trigger: TCCTGCAAGGCCTTCCTTGCAGCCAGACCCAAGGCCACTTGATCACAGGGATCCCTTGGAGCAAGTAGCTGTGTTAGCATCTCTGGGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | CCTGTAGGAAGTAAGGTAGCGGGTGGGCAAACCGCTGACCTGGCCTaGACTCCAAGTACAGGAGAAGTTTTCATAGTCTACCGCTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: PVGSKVAGGQTADLA*TPSTGEVFIVYRLA Trigger: TGCCAAGCGGTAGACTATGAAAACTTCTCCTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTGCCCACCCGCTACCTTACTTCCTACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 90 bp | TGTTATCACTTCCTCCAAGCCAATGGGCTCCACCGTGGACCAGGCTaGATGCTGTGCTGGTCGGTATTGCAACCGGAACTTGAGCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: CYHFLQANGLHRGPG*MLCWSVLQPELEQK Trigger: TTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTGGCTTGGAGGAAGTGATAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | CAGAGGGTCCTGTGGACACGGCCAAGGCCCGGTGGATaGACTTTCCCTCTGACTCTCAGCTCCTGGCAGCGT | + |
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Preference number: 6 (lower is better) Translates to: QRVLWTRPRPGG*TFPLTLSSWQR Trigger: ACGCTGCCAGGAGCTGAGAGTCAGAGGGAAAGTCCATCCACCGGGCCTTGGCCGTGTCCACAGGACCCTCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | CCTCCAGAGGGTCCTGTGGACACGGCCAAGGCCCGGTaGATGGACTTTCCCTCTGACTCTCAGCTCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: PPEGPVDTAKAR*MDFPSDSQLLA Trigger: TGCCAGGAGCTGAGAGTCAGAGGGAAAGTCCATCCACCGGGCCTTGGCCGTGTCCACAGGACCCTCTGGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | ATGGACCACACATCGGGAGGCCTCCAGAGGGTCCTGTaGACACGGCCAAGGCCCGGTGGATGGACTTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: MDHTSGGLQRVL*TRPRPGGWTFP Trigger: AGGGAAAGTCCATCCACCGGGCCTTGGCCGTGTCCACAGGACCCTCTGGAGGCCTCCCGATGTGTGGTCCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 90 bp | GGCGACGCCAGGAGGCAGGGTATGTCCAGCTGGCATGCAGGCGTCTaGGGTAACCAGGTACGGATTCCACCCGCAGTCCTTGGGGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: GDARRQGMSSWHAGV*GNQVRIPPAVLGVD Trigger: ATCCACCCCAAGGACTGCGGGTGGAATCCGTACCTGGTTACCCAAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | GGGGTTGGCGACGCCAGGAGGCAGGGTATGTCCAGCTaGCATGCAGGCGTCTTGGGTAACCAGGTACGGATT | + |
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Preference number: 6 (lower is better) Translates to: GVGDARRQGMSS*HAGVLGNQVRI Trigger: AATCCGTACCTGGTTACCCAAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 90 bp | CTGTGCTGGTCGGTATTGCAACCGGAACTTGAGCAGAAAGTGGGGTaGGCGACGCCAGGAGGCAGGGTATGTCCAGCTGGCATGCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: LCWSVLQPELEQKVG*ATPGGRVCPAGMQA Trigger: CGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | GGAGGCAGGGTATGTCCAGCTGGCATGCAGGCGTCTTaGGTAACCAGGTACGGATTCCACCCGCAGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: GGRVCPAGMQAS*VTRYGFHPQSL Trigger: CAAGGACTGCGGGTGGAATCCGTACCTGGTTACCCAAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | CTCCAAGGGATCCCTGTGATCAAGTGGCCTTGGGTCTaGCTGCAAGGAAGGCCTTGCAGGAGCCAGGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: LQGIPVIKWPWV*LQGRPCRSQAV Trigger: GACAGCCTGGCTCCTGCAAGGCCTTCCTTGCAGCCAGACCCAAGGCCACTTGATCACAGGGATCCCTTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 90 bp | GTGGACCAGGCTGGATGCTGTGCTGGTCGGTATTGCAACCGGAACTaGAGCAGAAAGTGGGGTTGGCGACGCCAGGAGGCAGGGTATGTC | + |
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Preference number: 6 (lower is better) Translates to: VDQAGCCAGRYCNRN*SRKWGWRRQEAGYV Trigger: GACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS GCA 72 bp | CCACCCGCAGTCCTTGGGGTGGATCGGGACGCAAGATaGTCTGTAATCTCACATCCAGTAGGCACGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PPAVLGVDRDAR*SVISHPVGTCW Trigger: CCAGCACGTGCCTACTGGATGTGAGATTACAGAGCATCTTGCGTCCCGATCCACCCCAAGGACTGCGGGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | ATAGTCTACCGCTTGGCAAGAGACTTCAGGACGTGCTaGGGGAAAGCCCAGCTTCAGGGTCACCATGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: IVYRLARDFRTC*GKAQLQGHHAP Trigger: GGGGGCATGGTGACCCTGAAGCTGGGCTTTCCCCCAGCACGTCCTGAAGTCTCTTGCCAAGCGGTAGACTAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | CGGTATTGCAACCGGAACTTGAGCAGAAAGTGGGGTTaGCGACGCCAGGAGGCAGGGTATGTCCAGCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: RYCNRNLSRKWG*RRQEAGYVQLA Trigger: TGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | GCTGGTCGGTATTGCAACCGGAACTTGAGCAGAAAGTaGGGTTGGCGACGCCAGGAGGCAGGGTATGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGRYCNRNLSRK*GWRRQEAGYVQ Trigger: CTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 72 bp | AGGAGGCAGGGTATGTCCAGCTGGCATGCAGGCGTCTaGGGTAACCAGGTACGGATTCCACCCGCAGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: RRQGMSSWHAGV*GNQVRIPPAVL Trigger: AAGGACTGCGGGTGGAATCCGTACCTGGTTACCCAAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 90 bp | GATCCCTGTGATCAAGTGGCCTTGGGTCTGGCTGCAAGGAAGGCCTaGCAGGAGCCAGGCTGTCCTCCTGAGCTACTACTGCCTCTAGCT | + |
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Preference number: 6 (lower is better) Translates to: DPCDQVALGLAARKA*QEPGCPPELLLPLA Trigger: AGCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCTGGCTCCTGCAAGGCCTTCCTTGCAGCCAGACCCAAGGCCACTTGATCACAGGGATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 90 bp | TCCAGTAGGCACGTGCTGGCACCCAGTGGGTTCACCTCGGTCACATaGATCCGGTACTCACTCCAGAACTCTGCCCCATGGACCACACAT | + |
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Preference number: 6 (lower is better) Translates to: SSRHVLAPSGFTSVT*IRYSLQNSAPWTTH Trigger: ATGTGTGGTCCATGGGGCAGAGTTCTGGAGTGAGTACCGGATCAATGTGACCGAGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS TCA 72 bp | ACGTGCTGGCACCCAGTGGGTTCACCTCGGTCACATTaGTCCGGTACTCACTCCAGAACTCTGCCCCATGGA | + |
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Preference number: 6 (lower is better) Translates to: TCWHPVGSPRSH*SGTHSRTLPHG Trigger: TCCATGGGGCAGAGTTCTGGAGTGAGTACCGGATCAATGTGACCGAGGTGAACCCACTGGGTGCCAGCACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CAA 90 bp | AGACCAGTCTGTGTCCTAACCCAGAGTCAGGTCCCTGGAGCAGCCTaGAATCTCCATCCCGAAACCAGGACACTGGAGTCCCAGCACTCA | + |
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Preference number: 6 (lower is better) Translates to: RPVCVLTQSQVPGAA*NLHPETRTLESQHS Trigger: TGAGTGCTGGGACTCCAGTGTCCTGGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGGGTTAGGACACAGACTGGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS GCA 72 bp | TTCATAGTCTACCGCTTGGCAAGAGACTTCAGGACGTaGTGGGGGAAAGCCCAGCTTCAGGGTCACCATGCC | + |
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Preference number: 6 (lower is better) Translates to: FIVYRLARDFRT*WGKAQLQGHHA Trigger: GGCATGGTGACCCTGAAGCTGGGCTTTCCCCCAGCACGTCCTGAAGTCTCTTGCCAAGCGGTAGACTATGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS TCA 72 bp | GATGCTAACACAGCTACTTGCTCCAAGGGATCCCTGTaGTCAAGTGGCCTTGGGTCTGGCTGCAAGGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: DANTATCSKGSL*SSGLGSGCKEG Trigger: GCCTTCCTTGCAGCCAGACCCAAGGCCACTTGATCACAGGGATCCCTTGGAGCAAGTAGCTGTGTTAGCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS GCA 72 bp | TGGAATTCCTGGAAGCTTTTCCACCGGGATCATGGGTaGCAAGAGCCCAGGTTTTTGCGGTCCTTCCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: WNSWKLFHRDHG*QEPRFLRSFLP Trigger: GGGAAGGAAGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | AAGACCAGTCTGTGTCCTAACCCAGAGTCAGGTCCCTaGAGCAGCCTTGAATCTCCATCCCGAAACCAGGAC | + |
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Preference number: 6 (lower is better) Translates to: KTSLCPNPESGP*SSLESPSRNQD Trigger: GTCCTGGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGGGTTAGGACACAGACTGGTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | GGTTTGGAATTCCTGGAAGCTTTTCCACCGGGATCATaGGTGCCAAGAGCCCAGGTTTTTGCGGTCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: GLEFLEAFPPGS*VPRAQVFAVLP Trigger: AGGAAGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | GAAGTTCTCTGGGGTCCTCTGCAGGTTTGGAATTCCTaGAAGCTTTTCCACCGGGATCATGGGTGCCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: EVLWGPLQVWNS*KLFHRDHGCQE Trigger: CTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACCCCAGAGAACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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| CDS CCA 72 bp | AGTAAGGTAGCGGGTGGGCAAACCGCTGACCTGGCCTaGACTCCAAGTACAGGAGAAGTTTTCATAGTCTAC | + |
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Preference number: 6 (lower is better) Translates to: SKVAGGQTADLA*TPSTGEVFIVY Trigger: GTAGACTATGAAAACTTCTCCTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTGCCCACCCGCTACCTTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108006.4 ENSMUST00000238770.2 |
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