RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IL11RA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073889

Ensembl transcript IDs: ENSMUST00000098132.11, ENSMUST00000108040.8, ENSMUST00000108041.8, ENSMUST00000108042.3

Found 182 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACACACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTaGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCC +
Preference number: 1 (lower is better)
Translates to: HTRSQEHRLLYTFLR*TSTSGHRKSRQPSA
Trigger: GGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGTGTGTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR GCA 90 bp GCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATaGAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACA +
Preference number: 1 (lower is better)
Translates to: AKPKTAHTLQSSVHT*RELLLPVSHTHTIT
Trigger: TGTGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR CCA 90 bp CTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTaGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGA +
Preference number: 1 (lower is better)
Translates to: LRTSEVQTAFSRQQV*SIGVKEKSSDFQLR
Trigger: TCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR CAA 90 bp CCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTaGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAG +
Preference number: 2 (lower is better)
Translates to: PQDIGSPDSLQPAAS*EYRCQRKELRLSAE
Trigger: CTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR CCA 72 bp TCACAGGAACACAGACTTCTGTACACATTCCTCAGGTaGACTTCCACCTCAGGACATCGGAAGTCCAGACAG +
Preference number: 3 (lower is better)
Translates to: SQEHRLLYTFLR*TSTSGHRKSRQ
Trigger: CTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR CCA 72 bp TCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTaGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTT +
Preference number: 3 (lower is better)
Translates to: SEVQTAFSRQQV*SIGVKEKSSDF
Trigger: AAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR GCA 72 bp AAGACCGCACACACTCTCCAATCATCTGTACACACATaGAGAGAACTTTTGCTCCCTGTCTCACATACACAC +
Preference number: 3 (lower is better)
Translates to: KTAHTLQSSVHT*RELLLPVSHTH
Trigger: GTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR GCA 72 bp CTCTCCAATCATCTGTACACACATGCAGAGAACTTTTaGTCCCTGTCTCACATACACACACGATCACAGGAA +
Preference number: 3 (lower is better)
Translates to: LSNHLYTHAENF*SLSHIHTRSQE
Trigger: TTCCTGTGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCCGGCCACCAGGACCCTaGTCAGCCCTGAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ELRLSAETSIHRDPLPRLRPPGP*SALSSC
Trigger: GCAGCTGCTCAGGGCTGACCAGGGTCCTGGTGGCCG...GAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAACGGCCACCAGGACCCTaGTCAGCCCTGAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VDFHLRTSEVQTAFSRQQRPPGP*SALSSC
Trigger: GCAGCTGCTCAGGGCTGACCAGGGTCCTGGTGGCCG...TTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCAGTACCCCAGGCCTCTaGGCTCCAGGCGCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: DFQLRPPSTGIHCPASFCSTPGL*APGAPG
Trigger: ACCTGGAGCGCCTGGAGCCCAGAGGCCTGGGGTACT...GCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CTCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCTCCAGGCGCTCCAGGTaGCAGCATCCAGAAAGTCCC +
Preference number: 4 (lower is better)
Translates to: LRWTSTSGHRKSRQPSAGSRRSR*QHPESP
Trigger: GGGACTTTCTGGATGCTGGCACCTGGAGCGCCTGGA...GCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTGGCCTTGGGTCCGGCTaGAAGGAAGGCCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: LRPPSTGIHCPASFCLSFGLGSG*KEGLAG
Trigger: TCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCC...AAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCCCAGTAGGCACGTGCTaGCACCCAGTGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: LRWTSTSGHRKSRQPSAGPVGTC*HPVGSP
Trigger: AGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGG...GCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTAGCAGAAAGTGGGGTTaGCGACGCCAGGAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: GLPPQDIGSPDSLQPAASSRKWG*RRQEAG
Trigger: CCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCT...ACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTCCAGGCGCTCCAGGTaGCAGCATCCAGAAAGTCCC +
Preference number: 4 (lower is better)
Translates to: GLPPQDIGSPDSLQPAASSRRSR*QHPESP
Trigger: GGGACTTTCTGGATGCTGGCACCTGGAGCGCCTGGA...ACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCGGCCTTGGGTCCGGCTaGAAGGAAGGCCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: HRDPLPRLFLPVLLTTQVGLGSG*KEGLAG
Trigger: TCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCC...GACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCGGCCACCAGGACCCTaGTCAGCCCTGAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: NSSHFPEGPSPRPHTLSNRPPGP*SALSSC
Trigger: GCAGCTGCTCAGGGCTGACCAGGGTCCTGGTGGCCG...ATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCGGCCACCAGGACCCTaGTCAGCCCTGAGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: SSHFPEGPSPRPHTLSNHRPPGP*SALSSC
Trigger: GCAGCTGCTCAGGGCTGACCAGGGTCCTGGTGGCCG...ATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTCCAGTAGGCACGTGCTaGCACCCAGTGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: SSDFQLRPPSTGIHCPASPVGTC*HPVGSP
Trigger: AGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGG...AGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAACAGGGTATGTCCAGCTaGCATGCAGGCGTCTCGGGT +
Preference number: 4 (lower is better)
Translates to: VDFHLRTSEVQTAFSRQQQGMSS*HAGVSG
Trigger: ACCCGAGACGCCTGCATGCCAGCTGGACATACCCTG...TTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTCACCGTGGACCAGGCTaGATGCTGTGCTGGTCGGTA +
Preference number: 4 (lower is better)
Translates to: GLPPQDIGSPDSLQPAASHRGPG*MLCWSV
Trigger: TACCGACCAGCACAGCATCCAGCCTGGTCCACGGTG...ACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTGACTCGTACCGCGTGTaGCAGCCCAGCCACAGCATC +
Preference number: 4 (lower is better)
Translates to: PQGSTAPPLSACPFNHPSDSYRV*QPSHSI
Trigger: GATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTC...ACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCGACTCGTACCGCGTGTaGCAGCCCAGCCACAGCATC +
Preference number: 4 (lower is better)
Translates to: HRDPLPRLFLPVLLTTQVDSYRV*QPSHSI
Trigger: GATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTC...GACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR TCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACGCCGGGCTGTCCTCCTaGGCTACTACTGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYAGLSS*ATTASS
Trigger: GCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGC...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp TCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCACATCCAGTAGGCACGTaGTGGCACCCAGTGGGTTCA +
Preference number: 4 (lower is better)
Translates to: SGGLPPQDIGSPDSLQPAHPVGT*WHPVGS
Trigger: TGAACCCACTGGGTGCCAGCACGTGCCTACTGGATG...TGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCTCCAGGCGCTCCAGGTaGCAGCATCCAGAAAGTCCC +
Preference number: 4 (lower is better)
Translates to: KELRLSAETSIHRDPLPRSRRSR*QHPESP
Trigger: GGGACTTTCTGGATGCTGGCACCTGGAGCGCCTGGA...GCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp TCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAACTACTGCCTCTAGCTaGTGTCCGTGTCCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SGGLPPQDIGSPDSLQPATTASS*CPCPWL
Trigger: GAGCCAGGGACACGGACAGCAGCTAGAGGCAGTAGT...TGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTACTACTGCCTCTAGCTaGTGTCCGTGTCCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: SSDFQLRPPSTGIHCPASTTASS*CPCPWL
Trigger: GAGCCAGGGACACGGACAGCAGCTAGAGGCAGTAGT...AGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCCGAAACCAGGACACTaGAGTCCCAGCACTCACTCC +
Preference number: 4 (lower is better)
Translates to: DFQLRPPSTGIHCPASFCPKPGH*SPSTHS
Trigger: GGAGTGAGTGCTGGGACTCCAGTGTCCTGGTTTCGG...GCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCACCGAAACCAGGACACTaGAGTCCCAGCACTCACTCC +
Preference number: 4 (lower is better)
Translates to: SGGLPPQDIGSPDSLQPAPKPGH*SPSTHS
Trigger: GGAGTGAGTGCTGGGACTCCAGTGTCCTGGTTTCGG...TGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCCAGTAGGCACGTGCTaGCACCCAGTGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: PQGSTAPPLSACPFNHPSPVGTC*HPVGSP
Trigger: AGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGG...ACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCCGCAGTCCTTGGGGTaGATCAGGACGCAAGATGCT +
Preference number: 4 (lower is better)
Translates to: DFQLRPPSTGIHCPASFCPQSLG*IRTQDA
Trigger: AGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGG...GCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCACCGCAGTCCTTGGGGTaGATCAGGACGCAAGATGCT +
Preference number: 4 (lower is better)
Translates to: SGGLPPQDIGSPDSLQPAPQSLG*IRTQDA
Trigger: AGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGG...TGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCCAGGGTATGTCCAGCTaGCATGCAGGCGTCTCGGGT +
Preference number: 4 (lower is better)
Translates to: HRDPLPRLFLPVLLTTQVQGMSS*HAGVSG
Trigger: ACCCGAGACGCCTGCATGCCAGCTGGACATACCCTG...GACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACAGCAGAAAGTGGGGTTaGCGACGCCAGGAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYSRKWG*RRQEAG
Trigger: CCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCT...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCAATGGGCTCCACCGTaGACCAGGCTGGATGCTGTG +
Preference number: 4 (lower is better)
Translates to: KELRLSAETSIHRDPLPRQWAPP*TRLDAV
Trigger: CACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTG...GCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACGACTCGTACCGCGTGTaGCAGCCCAGCCACAGCATC +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYDSYRV*QPSHSI
Trigger: GATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTC...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGAGTACCCCAGGCCTCTaGGCTCCAGGCGCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMSTPGL*APGAPG
Trigger: ACCTGGAGCGCCTGGAGCCCAGAGGCCTGGGGTACT...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTGTGATCAAGTGGCCTTaGGTCCGGCTGCAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: LRPPSTGIHCPASFCLSFVIKWP*VRLQGR
Trigger: CCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCAC...AAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCATCCAGTAGGCACGTaGTGGCACCCAGTGGGTTCA +
Preference number: 4 (lower is better)
Translates to: PQGSTAPPLSACPFNHPSHPVGT*WHPVGS
Trigger: TGAACCCACTGGGTGCCAGCACGTGCCTACTGGATG...ACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTGGAGTCATCCAGTAGGCACGTaGTGGCACCCAGTGGGTTCA +
Preference number: 4 (lower is better)
Translates to: HLRTSEVQTAFSRQQVWSHPVGT*WHPVGS
Trigger: TGAACCCACTGGGTGCCAGCACGTGCCTACTGGATG...ACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCCCAGGCTGGATGCTGTaGTGGTCGGTATTGCAACCG +
Preference number: 4 (lower is better)
Translates to: HRDPLPRLFLPVLLTTQVPGWML*WSVLQP
Trigger: CGGTTGCAATACCGACCAGCACAGCATCCAGCCTGG...GACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATCCAGGCGCTCCAGGTaGCAGCATCCAGAAAGTCCC +
Preference number: 4 (lower is better)
Translates to: PRRAKPKTAHTLQSSVHTSRRSR*QHPESP
Trigger: GGGACTTTCTGGATGCTGGCACCTGGAGCGCCTGGA...TGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTGGAGTACTACTGCCTCTAGCTaGTGTCCGTGTCCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: HLRTSEVQTAFSRQQVWSTTASS*CPCPWL
Trigger: GAGCCAGGGACACGGACAGCAGCTAGAGGCAGTAGT...ACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGGGCCTTGGGTCCGGCTaGAAGGAAGGCCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMGLGSG*KEGLAG
Trigger: TCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCC...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCCGTGCTGGCACCCAGTaGGTTCACCTCGGTCACATT +
Preference number: 4 (lower is better)
Translates to: HRDPLPRLFLPVLLTTQVRAGTQ*VHLGHI
Trigger: AATGTGACCGAGGTGAACCCACTGGGTGCCAGCACG...GACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGAGCAGAAAGTGGGGTTaGCGACGCCAGGAGGCAGGG +
Preference number: 4 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMSRKWG*RRQEAG
Trigger: CCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCT...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGAACTTGAGCAGAAAGTaGGGTTGGCGACGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: FQLRPPSTGIHCPASFCLNLSRK*GWRRQE
Trigger: CTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTT...CAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCGGCTGGATGCTGTGCTaGTCGGTATTGCAACCGGAA +
Preference number: 4 (lower is better)
Translates to: DFQLRPPSTGIHCPASFCGWMLC*SVLQPE
Trigger: TTCCGGTTGCAATACCGACCAGCACAGCATCCAGCC...GCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGCATCCAGTAGGCACGTaGTGGCACCCAGTGGGTTCA +
Preference number: 4 (lower is better)
Translates to: GPSPRPHTLSNHLYTHAEHPVGT*WHPVGS
Trigger: TGAACCCACTGGGTGCCAGCACGTGCCTACTGGATG...CTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACCCAGGCTGGATGCTGTaGTGGTCGGTATTGCAACCG +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYPGWML*WSVLQP
Trigger: CGGTTGCAATACCGACCAGCACAGCATCCAGCCTGG...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCAAGAGCCCAGGTTTTTaGGGTCCATCCTTCCCACTC +
Preference number: 4 (lower is better)
Translates to: KSSDFQLRPPSTGIHCPAKSPGF*GPSFPL
Trigger: GAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTT...GGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACCCAGGTTGTCCATACTaGACCCCTGGAGGACCCCAA +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYPGCPY*TPGGPQ
Trigger: TTGGGGTCCTCCAGGGGTCCAGTATGGACAACCTGG...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTCAACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCGGCAAACCGCTGACCTaGCCTGGACTCCAAGTACAG +
Preference number: 4 (lower is better)
Translates to: FNSSHFPEGPSPRPHTLSGKPLT*PGLQVQ
Trigger: CTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTGCC...GGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGCCGCAGTCCTTGGGGTaGATCAGGACGCAAGATGCT +
Preference number: 4 (lower is better)
Translates to: GPSPRPHTLSNHLYTHAEPQSLG*IRTQDA
Trigger: AGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGG...CTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTGGAGTGGCTGGATGCTGTGCTaGTCGGTATTGCAACCGGAA +
Preference number: 4 (lower is better)
Translates to: HLRTSEVQTAFSRQQVWSGWMLC*SVLQPE
Trigger: TTCCGGTTGCAATACCGACCAGCACAGCATCCAGCC...ACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCACCGTGGACCAGGCTaGATGCTGTGCTGGTCGGTA +
Preference number: 4 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMHRGPG*MLCWSV
Trigger: TACCGACCAGCACAGCATCCAGCCTGGTCCACGGTG...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCAATGGGCTCCACCGTaGACCAGGCTGGATGCTGTG +
Preference number: 4 (lower is better)
Translates to: SSHFPEGPSPRPHTLSNHQWAPP*TRLDAV
Trigger: CACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTG...ATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAGTACCCCAGGCCTCTaGGCTCCAGGCGCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: EVQTAFSRQQVWSIGVKESTPGL*APGAPG
Trigger: ACCTGGAGCGCCTGGAGCCCAGAGGCCTGGGGTACT...TTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCGTGATCAAGTGGCCTTaGGTCCGGCTGCAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: LHTSQKGQAQDRTHSPIIVIKWP*VRLQGR
Trigger: CCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCAC...GATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR TCA 90 bp AGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCAGGACATCGCCGGGCTGTCCTCCTaGGCTACTACTGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: RNTDFCTHSSGGLPPQDIAGLSS*ATTASS
Trigger: GCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGC...GATGTCCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp TTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCTGGCAGACATAAGTaGCTTCATCAGGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: FQLRPPSTGIHCPASFCLSGRHK*LHQGCP
Trigger: TGGACAGCCCTGATGAAGGCACTTATGTCTGCCAGA...CAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTGTGCTGGTCGGTATTaGAACCGGAACTTGAGCAGA +
Preference number: 4 (lower is better)
Translates to: SSDFQLRPPSTGIHCPASCAGRY*NRNLSR
Trigger: TCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACA...AGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp TCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGTGGACCAGGCTGGATaGTGTGCTGGTCGGTATTGC +
Preference number: 4 (lower is better)
Translates to: SSHFPEGPSPRPHTLSNHVDQAG*CAGRYC
Trigger: GCAATACCGACCAGCACAGCATCCAGCCTGGTCCAC...ATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATGTGGACCAGGCTGGATaGTGTGCTGGTCGGTATTGC +
Preference number: 4 (lower is better)
Translates to: NSSHFPEGPSPRPHTLSNVDQAG*CAGRYC
Trigger: GCAATACCGACCAGCACAGCATCCAGCCTGGTCCAC...ATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGGTGGACCAGGCTGGATaGTGTGCTGGTCGGTATTGC +
Preference number: 4 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMVDQAG*CAGRYC
Trigger: GCAATACCGACCAGCACAGCATCCAGCCTGGTCCAC...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGGCAAACCGCTGACCTaGCCTGGACTCCAAGTACAG +
Preference number: 4 (lower is better)
Translates to: SSHFPEGPSPRPHTLSNHGKPLT*PGLQVQ
Trigger: CTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTGCC...ATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TATTTCAACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCCAGGGTATGTCCAGCTaGCATGCAGGCGTCTCGGGT +
Preference number: 4 (lower is better)
Translates to: YFNSSHFPEGPSPRPHTLQGMSS*HAGVSG
Trigger: ACCCGAGACGCCTGCATGCCAGCTGGACATACCCTG...GAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTTGAAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAACTTGAGCAGAAAGTaGGGTTGGCGACGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: GPSPRPHTLSNHLYTHAENLSRK*GWRRQE
Trigger: CTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTT...CTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACAACTTGAGCAGAAAGTaGGGTTGGCGACGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYNLSRK*GWRRQE
Trigger: CTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTT...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCGGCTGGATGCTGTGCTaGTCGGTATTGCAACCGGAA +
Preference number: 4 (lower is better)
Translates to: LHTSQKGQAQDRTHSPIIGWMLC*SVLQPE
Trigger: TTCCGGTTGCAATACCGACCAGCACAGCATCCAGCC...GATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTTTCCACCGGGATCATaGGTGCCAAGAGCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: LHTSQKGQAQDRTHSPIIFPPGS*VPRAQV
Trigger: AACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAA...GATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCTCAGCTGAAGTTCTCTaGGGTCCTCTGCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: KELRLSAETSIHRDPLPRSAEVL*GPLQVW
Trigger: CCAAACCTGCAGAGGACCCCAGAGAACTTCAGCTGA...GCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTTCTGGCAGACATAAGTaGCTTCATCAGGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: PQGSTAPPLSACPFNHPSSGRHK*LHQGCP
Trigger: TGGACAGCCCTGATGAAGGCACTTATGTCTGCCAGA...ACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCTCACTCCAGAACTCTaGCCCATGGACCACACATCG +
Preference number: 4 (lower is better)
Translates to: NSSHFPEGPSPRPHTLSNLTPEL*PMDHTS
Trigger: CGATGTGTGGTCCATGGGGCAGAGTTCTGGAGTGAG...ATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp ACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCCACCGTGGACCAGGCTaGATGCTGTGCTGGTCGGTA +
Preference number: 4 (lower is better)
Translates to: TITGTQTSVHIPQVDFHLHRGPG*MLCWSV
Trigger: TACCGACCAGCACAGCATCCAGCCTGGTCCACGGTG...GAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGTACCCCAGGCCTCTaGGCTCCAGGCGCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: EYRCQRKELRLSAETSIHSTPGL*APGAPG
Trigger: ACCTGGAGCGCCTGGAGCCCAGAGGCCTGGGGTACT...GTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TATTTCAACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCGTGATCAAGTGGCCTTaGGTCCGGCTGCAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: YFNSSHFPEGPSPRPHTLVIKWP*VRLQGR
Trigger: CCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCAC...GAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTTGAAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGGTCCTCTGCAGGTTTaGAATTCCTGGAAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: SGGLPPQDIGSPDSLQPAGPLQV*NSWKLF
Trigger: GAAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACC...TGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTCAACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCTCAGCTGAAGTTCTCTaGGGTCCTCTGCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: FNSSHFPEGPSPRPHTLSSAEVL*GPLQVW
Trigger: CCAAACCTGCAGAGGACCCCAGAGAACTTCAGCTGA...GGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR TCA 90 bp CTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCAGCCGGGCTGTCCTCCTaGGCTACTACTGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: LYTHAENFCSLSHIHTRSAGLSS*ATTASS
Trigger: GCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGC...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp TTCAACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCTGTGCTGGTCGGTATTaGAACCGGAACTTGAGCAGA +
Preference number: 4 (lower is better)
Translates to: FNSSHFPEGPSPRPHTLSCAGRY*NRNLSR
Trigger: TCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACA...GGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCAGGCTGGATGCTGTaGTGGTCGGTATTGCAACCG +
Preference number: 4 (lower is better)
Translates to: KEKSSDFQLRPPSTGIHCPGWML*WSVLQP
Trigger: CGGTTGCAATACCGACCAGCACAGCATCCAGCCTGG...GCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCCAGGCTGGATGCTGTaGTGGTCGGTATTGCAACCG +
Preference number: 4 (lower is better)
Translates to: GVKEKSSDFQLRPPSTGIPGWML*WSVLQP
Trigger: CGGTTGCAATACCGACCAGCACAGCATCCAGCCTGG...GATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp ATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCAGGACTACTGCCTCTAGCTaGTGTCCGTGTCCCTGGCTC +
Preference number: 4 (lower is better)
Translates to: ITGTQTSVHIPQVDFHLRTTASS*CPCPWL
Trigger: GAGCCAGGGACACGGACAGCAGCTAGAGGCAGTAGT...CCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACGGCCTTGGGTCCGGCTaGAAGGAAGGCCTTGCAGGA +
Preference number: 4 (lower is better)
Translates to: EYRCQRKELRLSAETSIHGLGSG*KEGLAG
Trigger: TCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCC...GTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAAAGAGCCCAGGTTTTTaGGGTCCATCCTTCCCACTC +
Preference number: 4 (lower is better)
Translates to: GQAQDRTHSPIICTHMQRKSPGF*GPSFPL
Trigger: GAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTT...TCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCGGCAAACCGCTGACCTaGCCTGGACTCCAAGTACAG +
Preference number: 4 (lower is better)
Translates to: GVKEKSSDFQLRPPSTGIGKPLT*PGLQVQ
Trigger: CTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTGCC...GATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGACTGACTCTCAGCTCCTaGCAGCGTCTTCTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: GQAQDRTHSPIICTHMQRLTLSS*QRLLPV
Trigger: TACAGGAAGAAGACGCTGCCAGGAGCTGAGAGTCAG...TCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCGTGCTGGCACCCAGTaGGTTCACCTCGGTCACATT +
Preference number: 4 (lower is better)
Translates to: KEKSSDFQLRPPSTGIHCRAGTQ*VHLGHI
Trigger: AATGTGACCGAGGTGAACCCACTGGGTGCCAGCACG...GCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAACTTTTGCCACCGTGGACCAGGCTaGATGCTGTGCTGGTCGGTA +
Preference number: 4 (lower is better)
Translates to: PRPHTLSNHLYTHAENFCHRGPG*MLCWSV
Trigger: TACCGACCAGCACAGCATCCAGCCTGGTCCACGGTG...GCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCAGGTTTGGAATTCCTaGAAGCTTTTCCACCGGGAT +
Preference number: 4 (lower is better)
Translates to: PQGSTAPPLSACPFNHPSQVWNS*KLFHRD
Trigger: ATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTG...ACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR TCA 90 bp TTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTGCCGGGCTGTCCTCCTaGGCTACTACTGCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: FSRQQVWSIGVKEKSSDFAGLSS*ATTASS
Trigger: GCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGC...AAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR TCA 90 bp GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACTCCAAGGGGTCCCTGTaGTCAAGTGGCCTTGGGTCC +
Preference number: 4 (lower is better)
Translates to: EYRCQRKELRLSAETSIHSKGSL*SSGLGS
Trigger: GGACCCAAGGCCACTTGATCACAGGGACCCCTTGGA...GTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGATCTGGCAGACATAAGTaGCTTCATCAGGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: GQAQDRTHSPIICTHMQRSGRHK*LHQGCP
Trigger: TGGACAGCCCTGATGAAGGCACTTATGTCTGCCAGA...TCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp ACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCCCAGAGTCAGGTCCCTaGAGCAGCCTTGAATCTCCA +
Preference number: 4 (lower is better)
Translates to: TITGTQTSVHIPQVDFHLPESGP*SSLESP
Trigger: TGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGG...GAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAACCAGAGTCAGGTCCCTaGAGCAGCCTTGAATCTCCA +
Preference number: 4 (lower is better)
Translates to: EVQTAFSRQQVWSIGVKEPESGP*SSLESP
Trigger: TGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGG...TTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCAGGCAAACCGCTGACCTaGCCTGGACTCCAAGTACAG +
Preference number: 4 (lower is better)
Translates to: CQRKELRLSAETSIHRDPGKPLT*PGLQVQ
Trigger: CTGTACTTGGAGTCCAGGCCAGGTCAGCGGTTTGCC...TGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACCAGTAGGCACGTGCTaGCACCCAGTGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: LYTHAENFCSLSHIHTRSPVGTC*HPVGSP
Trigger: AGGTGAACCCACTGGGTGCCAGCACGTGCCTACTGG...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCAGGACATCGGCTGGATGCTGTGCTaGTCGGTATTGCAACCGGAA +
Preference number: 4 (lower is better)
Translates to: RNTDFCTHSSGGLPPQDIGWMLC*SVLQPE
Trigger: TTCCGGTTGCAATACCGACCAGCACAGCATCCAGCC...GATGTCCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCAATGGGCTCCACCGTaGACCAGGCTGGATGCTGTG +
Preference number: 4 (lower is better)
Translates to: SRQQVWSIGVKEKSSDFQQWAPP*TRLDAV
Trigger: CACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTG...CTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACCAATGGGCTCCACCGTaGACCAGGCTGGATGCTGTG +
Preference number: 4 (lower is better)
Translates to: EYRCQRKELRLSAETSIHQWAPP*TRLDAV
Trigger: CACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTG...GTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTGACTCGTACCGCGTGTaGCAGCCCAGCCACAGCATC +
Preference number: 4 (lower is better)
Translates to: FSRQQVWSIGVKEKSSDFDSYRV*QPSHSI
Trigger: GATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTC...AAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp ACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACAGGGTGATCAAGTGGCCTTaGGTCCGGCTGCAAGGAAGG +
Preference number: 4 (lower is better)
Translates to: THMQRTFAPCLTYTHDHRVIKWP*VRLQGR
Trigger: CCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCAC...CCTGTGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAATTTCCACCGGGATCATaGGTGCCAAGAGCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: EVQTAFSRQQVWSIGVKEFPPGS*VPRAQV
Trigger: AACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAA...TTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGCAGGTTTGGAATTCCTaGAAGCTTTTCCACCGGGAT +
Preference number: 4 (lower is better)
Translates to: GPSPRPHTLSNHLYTHAEQVWNS*KLFHRD
Trigger: ATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTG...CTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACGGTCCTCTGCAGGTTTaGAATTCCTGGAAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: HFPEGPSPRPHTLSNHLYGPLQV*NSWKLF
Trigger: GAAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACC...GTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCGGTCCTCTGCAGGTTTaGAATTCCTGGAAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: LHTSQKGQAQDRTHSPIIGPLQV*NSWKLF
Trigger: GAAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACC...GATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGGTGGACCAGGCTGGATaGTGTGCTGGTCGGTATTGC +
Preference number: 4 (lower is better)
Translates to: SRQQVWSIGVKEKSSDFQVDQAG*CAGRYC
Trigger: GCAATACCGACCAGCACAGCATCCAGCCTGGTCCAC...CTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp GGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCAAGAGCCCAGGTTTTTaGGGTCCATCCTTCCCACTC +
Preference number: 4 (lower is better)
Translates to: GVKEKSSDFQLRPPSTGIKSPGF*GPSFPL
Trigger: GAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTT...GATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACCGAAACCAGGACACTaGAGTCCCAGCACTCACTCC +
Preference number: 4 (lower is better)
Translates to: LYTHAENFCSLSHIHTRSPKPGH*SPSTHS
Trigger: GGAGTGAGTGCTGGGACTCCAGTGTCCTGGTTTCGG...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp ACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCCTGACTCTCAGCTCCTaGCAGCGTCTTCTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: TITGTQTSVHIPQVDFHLLTLSS*QRLLPV
Trigger: TACAGGAAGAAGACGCTGCCAGGAGCTGAGAGTCAG...GAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CACACACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCCTGACTCTCAGCTCCTaGCAGCGTCTTCTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: HTRSQEHRLLYTFLRWTSLTLSS*QRLLPV
Trigger: TACAGGAAGAAGACGCTGCCAGGAGCTGAGAGTCAG...GGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGTGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCGTGCTGGCACCCAGTaGGTTCACCTCGGTCACATT +
Preference number: 4 (lower is better)
Translates to: SRQQVWSIGVKEKSSDFQRAGTQ*VHLGHI
Trigger: AATGTGACCGAGGTGAACCCACTGGGTGCCAGCACG...CTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACCCGCAGTCCTTGGGGTaGATCAGGACGCAAGATGCT +
Preference number: 4 (lower is better)
Translates to: EYRCQRKELRLSAETSIHPQSLG*IRTQDA
Trigger: AGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGG...GTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCCAGGGTATGTCCAGCTaGCATGCAGGCGTCTCGGGT +
Preference number: 4 (lower is better)
Translates to: ASLEYRCQRKELRLSAETQGMSS*HAGVSG
Trigger: ACCCGAGACGCCTGCATGCCAGCTGGACATACCCTG...GGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCTCAGCTGAAGTTCTCTaGGGTCCTCTGCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: KEKSSDFQLRPPSTGIHCSAEVL*GPLQVW
Trigger: CCAAACCTGCAGAGGACCCCAGAGAACTTCAGCTGA...GCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp ACGATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCTCTGGCAGACATAAGTaGCTTCATCAGGGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: TITGTQTSVHIPQVDFHLSGRHK*LHQGCP
Trigger: TGGACAGCCCTGATGAAGGCACTTATGTCTGCCAGA...GAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGATCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACCCAGAGTCAGGTCCCTaGAGCAGCCTTGAATCTCCA +
Preference number: 4 (lower is better)
Translates to: EYRCQRKELRLSAETSIHPESGP*SSLESP
Trigger: TGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGG...GTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAACTTTTGCCTGACTCTCAGCTCCTaGCAGCGTCTTCTTCCTGTA +
Preference number: 4 (lower is better)
Translates to: PRPHTLSNHLYTHAENFCLTLSS*QRLLPV
Trigger: TACAGGAAGAAGACGCTGCCAGGAGCTGAGAGTCAG...GCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCGTGCTGGCACCCAGTaGGTTCACCTCGGTCACATT +
Preference number: 4 (lower is better)
Translates to: FSRQQVWSIGVKEKSSDFRAGTQ*VHLGHI
Trigger: AATGTGACCGAGGTGAACCCACTGGGTGCCAGCACG...AAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TATTTCAACTCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCGGTCCTCTGCAGGTTTaGAATTCCTGGAAGCTTTTC +
Preference number: 4 (lower is better)
Translates to: YFNSSHFPEGPSPRPHTLGPLQV*NSWKLF
Trigger: GAAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACC...GAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGAGTTGAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp CCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAACTTTTGCTGTGCTGGTCGGTATTaGAACCGGAACTTGAGCAGA +
Preference number: 4 (lower is better)
Translates to: PRPHTLSNHLYTHAENFCCAGRY*NRNLSR
Trigger: TCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACA...GCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR GCA 90 bp AGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGAAGAGCCCAGGTTTTTaGGGTCCATCCTTCCCACTC +
Preference number: 4 (lower is better)
Translates to: SRQQVWSIGVKEKSSDFQKSPGF*GPSFPL
Trigger: GAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTT...CTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCCAGAGTCAGGTCCCTaGAGCAGCCTTGAATCTCCA +
Preference number: 4 (lower is better)
Translates to: FSRQQVWSIGVKEKSSDFPESGP*SSLESP
Trigger: TGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGG...AAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp GCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCAACTTGAGCAGAAAGTaGGGTTGGCGACGCCAGGAG +
Preference number: 4 (lower is better)
Translates to: ASLEYRCQRKELRLSAETNLSRK*GWRRQE
Trigger: CTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTT...GGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp AAAGAAAAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCAGGTTTGGAATTCCTaGAAGCTTTTCCACCGGGAT +
Preference number: 4 (lower is better)
Translates to: KEKSSDFQLRPPSTGIHCQVWNS*KLFHRD
Trigger: ATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTG...GCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
3UTR CAA 72 bp ATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTTaGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTT +
Preference number: 4 (lower is better)
Translates to: IGSPDSLQPAAS*EYRCQRKELRL
Trigger: AAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp TTCAGCCGGCAGCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTTCAGCTGAAGTTCTCTaGGGTCCTCTGCAGGTTTGG +
Preference number: 4 (lower is better)
Translates to: FSRQQVWSIGVKEKSSDFSAEVL*GPLQVW
Trigger: CCAAACCTGCAGAGGACCCCAGAGAACTTCAGCTGA...AAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGCTGCCGGCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CCA 90 bp CTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACAGGTTTGGAATTCCTaGAAGCTTTTCCACCGGGAT +
Preference number: 4 (lower is better)
Translates to: LYTHAENFCSLSHIHTRSQVWNS*KLFHRD
Trigger: ATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTG...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS TCA 90 bp GGGTCCGGCTGCAAGGAAGGCCTTGCAGGAGCCGGGCTGTCCTCCTaGGCTACTACTGCCTCTAGCTGCTGTCCGTGTCCCTGGCTCCAA +
Preference number: 5 (lower is better)
Translates to: GSGCKEGLAGAGLSS*ATTASSCCPCPWLQ
Trigger: TTGGAGCCAGGGACACGGACAGCAGCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGCTCCTGCAAGGCCTTCCTTGCAGCCGGACCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 90 bp GCAGAAAGTGGGGTTGGCGACGCCAGGAGGCAGGGTATGTCCAGCTaGCATGCAGGCGTCTCGGGTAACCAGGTACGGATTCCACCCGCA +
Preference number: 5 (lower is better)
Translates to: AESGVGDARRQGMSS*HAGVSGNQVRIPPA
Trigger: TGCGGGTGGAATCCGTACCTGGTTACCCGAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 90 bp TATCTCATCCTGCAGGGGACCAGTGCTAGGAGTACCCCAGGCCTCTaGGCTCCAGGCGCTCCAGGTGCCAGCATCCAGAAAGTCCCTGGC +
Preference number: 5 (lower is better)
Translates to: YLILQGTSARSTPGL*APGAPGASIQKVPG
Trigger: GCCAGGGACTTTCTGGATGCTGGCACCTGGAGCGCCTGGAGCCCAGAGGCCTGGGGTACTCCTAGCACTGGTCCCCTGCAGGATGAGATA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp GAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCGAGCAGAAAGTGGGGTaGGCGACGCCAGGAGGCAGG +
Preference number: 5 (lower is better)
Translates to: ELRLSAETSIHRDPLPRLEQKVG*ATPGGR
Trigger: CCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTC...GAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp AGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTCACGGGCCTGCCAGGTaGTCCATACTGGACCCCTGG +
Preference number: 5 (lower is better)
Translates to: SSDFQLRPPSTGIHCPASHGPAR*SILDPW
Trigger: CCAGGGGTCCAGTATGGACAACCTGGCAGGCCCGTG...AGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp TTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGCACGGGCCTGCCAGGTaGTCCATACTGGACCCCTGG +
Preference number: 5 (lower is better)
Translates to: FQLRPPSTGIHCPASFCLHGPAR*SILDPW
Trigger: CCAGGGGTCCAGTATGGACAACCTGGCAGGCCCGTG...CAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp GGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTCACGGGCCTGCCAGGTaGTCCATACTGGACCCCTGG +
Preference number: 5 (lower is better)
Translates to: GLPPQDIGSPDSLQPAASHGPAR*SILDPW
Trigger: CCAGGGGTCCAGTATGGACAACCTGGCAGGCCCGTG...ACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 90 bp TCTAGCTGCTGTCCGTGTCCCTGGCTCCAATCAGGTATCTCATCCTaGAGGGGACCAGTGCTAGGAGTACCCCAGGCCTCTGGGCTCCAG +
Preference number: 5 (lower is better)
Translates to: SSCCPCPWLQSGISS*RGPVLGVPQASGLQ
Trigger: CTGGAGCCCAGAGGCCTGGGGTACTCCTAGCACTGGTCCCCTGCAGGATGAGATACCTGATTGGAGCCAGGGACACGGACAGCAGCTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp ACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACAGAGCAGAAAGTGGGGTaGGCGACGCCAGGAGGCAGG +
Preference number: 5 (lower is better)
Translates to: TSQKGQAQDRTHSPIICTEQKVG*ATPGGR
Trigger: CCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTC...TGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGGAGCAGAAAGTGGGGTaGGCGACGCCAGGAGGCAGG +
Preference number: 5 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMEQKVG*ATPGGR
Trigger: CCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTC...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp GAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCTCCAAGAGCCCAGGTTTTaGCGGTCCATCCTTCCCACT +
Preference number: 5 (lower is better)
Translates to: ELRLSAETSIHRDPLPRLQEPRF*RSILPT
Trigger: AGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTG...GAGGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 90 bp AGACTTCAGGACGTGCTGGGGGAAAGCCCAGCTTCAGGGTCACCATaGCCCCTGATACACCATCCAGGGTCTGGCAGACATAAGTGCCTT +
Preference number: 5 (lower is better)
Translates to: RLQDVLGESPASGSP*PLIHHPGSGRHKCL
Trigger: AAGGCACTTATGTCTGCCAGACCCTGGATGGTGTATCAGGGGGCATGGTGACCCTGAAGCTGGGCTTTCCCCCAGCACGTCCTGAAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 90 bp GTACGGATTCCACCCGCAGTCCTTGGGGTGGATCAGGACGCAAGATaGTCTGTAATCTCACATCCAGTAGGCACGTGCTGGCACCCAGTG +
Preference number: 5 (lower is better)
Translates to: VRIPPAVLGVDQDAR*SVISHPVGTCWHPV
Trigger: CACTGGGTGCCAGCACGTGCCTACTGGATGTGAGATTACAGAGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGGGTGGAATCCGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 90 bp GGTGCCAGCATCCAGAAAGTCCCTGGCACTGACTCGTACCGCGTGTaGCAGCCCAGCCACAGCATCTGTTATCACTTCCTCCAAGCCAAT +
Preference number: 5 (lower is better)
Translates to: GASIQKVPGTDSYRV*QPSHSICYHFLQAN
Trigger: ATTGGCTTGGAGGAAGTGATAACAGATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTCAGTGCCAGGGACTTTCTGGATGCTGGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp AAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCCTGTGCTGGTCGGTATaGCAACCGGAACTTGAGCAG +
Preference number: 5 (lower is better)
Translates to: KSSDFQLRPPSTGIHCPALCWSV*QPELEQ
Trigger: CTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAG...GGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp AAGAGCTCAGACTTTCAGCTGAGACCTCCATCCACAGGGATCCACTGCCCCGCCCAAGAGCCCAGGTTTTaGCGGTCCATCCTTCCCACT +
Preference number: 5 (lower is better)
Translates to: KSSDFQLRPPSTGIHCPAQEPRF*RSILPT
Trigger: AGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTG...GGCGGGGCAGTGGATCCCTGTGGATGGAGGTCTCAGCTGAAAGTCTGAGCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 90 bp ATCACTTCCTCCAAGCCAATGGGCTCCACCGTGGACCAGGCTGGATaGTGTGCTGGTCGGTATTGCAACCGGAACTTGAGCAGAAAGTGG +
Preference number: 5 (lower is better)
Translates to: ITSSKPMGSTVDQAG*CAGRYCNRNLSRKW
Trigger: CCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTGGCTTGGAGGAAGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp ATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCAGGGAGCAGAAAGTGGGGTaGGCGACGCCAGGAGGCAGG +
Preference number: 5 (lower is better)
Translates to: ITGTQTSVHIPQVDFHLREQKVG*ATPGGR
Trigger: CCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTC...CCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 90 bp CTGCAGGTTTGGAATTCCTGGAAGCTTTTCCACCGGGATCATGGGTaGCAAGAGCCCAGGTTTTTGCGGTCCATCCTTCCCACTCCGTCT +
Preference number: 5 (lower is better)
Translates to: LQVWNSWKLFHRDHG*QEPRFLRSILPTPS
Trigger: AGACGGAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 90 bp TCCTCTGCAGGTTTGGAATTCCTGGAAGCTTTTCCACCGGGATCATaGGTGCCAAGAGCCCAGGTTTTTGCGGTCCATCCTTCCCACTCC +
Preference number: 5 (lower is better)
Translates to: SSAGLEFLEAFPPGS*VPRAQVFAVHPSHS
Trigger: GGAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACCTGCAGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp CCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAACTTTTGCCACGGGCCTGCCAGGTaGTCCATACTGGACCCCTGG +
Preference number: 5 (lower is better)
Translates to: PRPHTLSNHLYTHAENFCHGPAR*SILDPW
Trigger: CCAGGGGTCCAGTATGGACAACCTGGCAGGCCCGTG...GCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp GGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGCAAGTGGGTCCTCTGCAGGTTaGGAATTCCTGGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: GLPPQDIGSPDSLQPAASGSSAG*EFLEAF
Trigger: AAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACCC...ACTTGCTGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp TCAGGTGGACTTCCACCTCAGGACATCGGAAGTCCAGACAGCCTTCAGCCGGCAGGGTCCTCTGCAGGTTaGGAATTCCTGGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: SGGLPPQDIGSPDSLQPAGSSAG*EFLEAF
Trigger: AAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACCC...TGCCGGCTGAAGGCTGTCTGGACTTCCGATGTCCTGAGGTGGAAGTCCACCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp CAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAAGAGCCCAGGTTTTaGCGGTCCATCCTTCCCACT +
Preference number: 5 (lower is better)
Translates to: QKGQAQDRTHSPIICTHMQEPRF*RSILPT
Trigger: AGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTG...CATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp CACAGGGATCCACTGCCCCGCCTCTTTCTGCCTGTCCTTTTAACCACCCAAGTCGGGTCCTCTGCAGGTTaGGAATTCCTGGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: HRDPLPRLFLPVLLTTQVGSSAG*EFLEAF
Trigger: AAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACCC...GACTTGGGTGGTTAAAAGGACAGGCAGAAAGAGGCGGGGCAGTGGATCCCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp ATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCAGGGTCCCTGGAGCAGCCTaGAATCTCCATCCCGAAACC +
Preference number: 5 (lower is better)
Translates to: ITGTQTSVHIPQVDFHLRVPGAA*NLHPET
Trigger: GGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGAC...CCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp ATCACAGGAACACAGACTTCTGTACACATTCCTCAGGTGGACTTCCACCTCAGGCTGTGCTGGTCGGTATaGCAACCGGAACTTGAGCAG +
Preference number: 5 (lower is better)
Translates to: ITGTQTSVHIPQVDFHLRLCWSV*QPELEQ
Trigger: CTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAG...CCTGAGGTGGAAGTCCACCTGAGGAATGTGTACAGAAGTCTGTGTTCCTGTGAT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp TCTTCACACTTCCCAGAAGGGCCAAGCCCAAGACCGCACACACTCTCCAATCATGGGTCCTCTGCAGGTTaGGAATTCCTGGAAGCTTTT +
Preference number: 5 (lower is better)
Translates to: SSHFPEGPSPRPHTLSNHGSSAG*EFLEAF
Trigger: AAAAGCTTCCAGGAATTCCAAACCTGCAGAGGACCC...ATGATTGGAGAGTGTGTGCGGTCTTGGGCTTGGCCCTTCTGGGAAGTGTGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp CCAAGACCGCACACACTCTCCAATCATCTGTACACACATGCAGAGAACTTTTGCCTGTGCTGGTCGGTATaGCAACCGGAACTTGAGCAG +
Preference number: 5 (lower is better)
Translates to: PRPHTLSNHLYTHAENFCLCWSV*QPELEQ
Trigger: CTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAG...GCAAAAGTTCTCTGCATGTGTGTACAGATGATTGGAGAGTGTGTGCGGTCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp CTGTACACACATGCAGAGAACTTTTGCTCCCTGTCTCACATACACACACGATCACTGTGCTGGTCGGTATaGCAACCGGAACTTGAGCAG +
Preference number: 5 (lower is better)
Translates to: LYTHAENFCSLSHIHTRSLCWSV*QPELEQ
Trigger: CTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAG...TGATCGTGTGTGTATGTGAGACAGGGAGCAAAAGTTCTCTGCATGTGTGTACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS-3UTR CAA 90 bp GCAAGTTTGGAGTATAGGTGTCAAAGAAAAGAGCTCAGACTTTCAGCTGAGACCCAAGAGCCCAGGTTTTaGCGGTCCATCCTTCCCACT +
Preference number: 5 (lower is better)
Translates to: ASLEYRCQRKELRLSAETQEPRF*RSILPT
Trigger: AGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTG...GGTCTCAGCTGAAAGTCTGAGCTCTTTTCTTTGACACCTATACTCCAAACTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 72 bp GGGGTTGGCGACGCCAGGAGGCAGGGTATGTCCAGCTaGCATGCAGGCGTCTCGGGTAACCAGGTACGGATT +
Preference number: 6 (lower is better)
Translates to: GVGDARRQGMSS*HAGVSGNQVRI
Trigger: AATCCGTACCTGGTTACCCGAGACGCCTGCATGCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS TCA 72 bp TGCAAGGAAGGCCTTGCAGGAGCCGGGCTGTCCTCCTaGGCTACTACTGCCTCTAGCTGCTGTCCGTGTCCC +
Preference number: 6 (lower is better)
Translates to: CKEGLAGAGLSS*ATTASSCCPCP
Trigger: GGGACACGGACAGCAGCTAGAGGCAGTAGTAGCTCAGGAGGACAGCCCGGCTCCTGCAAGGCCTTCCTTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 72 bp ATCAAGTGGCCTTGGGTCCGGCTGCAAGGAAGGCCTTaGAGGAGCCGGGCTGTCCTCCTGAGCTACTACTGC +
Preference number: 6 (lower is better)
Translates to: IKWPWVRLQGRP*RSRAVLLSYYC
Trigger: GCAGTAGTAGCTCAGGAGGACAGCCCGGCTCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCCACTTGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 72 bp TACTTGCTCCAAGGGGTCCCTGTGATCAAGTGGCCTTaGGTCCGGCTGCAAGGAAGGCCTTGCAGGAGCCGG +
Preference number: 6 (lower is better)
Translates to: YLLQGVPVIKWP*VRLQGRPCRSR
Trigger: CCGGCTCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCACAGGGACCCCTTGGAGCAAGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp CTACTTGCTCCAAGGGGTCCCTGTGATCAAGTGGCCTaGGGTCCGGCTGCAAGGAAGGCCTTGCAGGAGCCG +
Preference number: 6 (lower is better)
Translates to: LLAPRGPCDQVA*GPAARKALQEP
Trigger: CGGCTCCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCACAGGGACCCCTTGGAGCAAGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 72 bp ATAGTCTACCGCTTGGCAGGAGACTTCAGGACGTGCTaGGGGAAAGCCCAGCTTCAGGGTCACCATGCCCCC +
Preference number: 6 (lower is better)
Translates to: IVYRLAGDFRTC*GKAQLQGHHAP
Trigger: GGGGGCATGGTGACCCTGAAGCTGGGCTTTCCCCCAGCACGTCCTGAAGTCTCCTGCCAAGCGGTAGACTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 72 bp CACAGCTACTTGCTCCAAGGGGTCCCTGTGATCAAGTaGCCTTGGGTCCGGCTGCAAGGAAGGCCTTGCAGG +
Preference number: 6 (lower is better)
Translates to: HSYLLQGVPVIK*PWVRLQGRPCR
Trigger: CCTGCAAGGCCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCACAGGGACCCCTTGGAGCAAGTAGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS TCA 72 bp GACGCTAACACAGCTACTTGCTCCAAGGGGTCCCTGTaGTCAAGTGGCCTTGGGTCCGGCTGCAAGGAAGGC +
Preference number: 6 (lower is better)
Translates to: DANTATCSKGSL*SSGLGSGCKEG
Trigger: GCCTTCCTTGCAGCCGGACCCAAGGCCACTTGATCACAGGGACCCCTTGGAGCAAGTAGCTGTGTTAGCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 72 bp TCCAAGCCAATGGGCTCCACCGTGGACCAGGCTGGATaGTGTGCTGGTCGGTATTGCAACCGGAACTTGAGC +
Preference number: 6 (lower is better)
Translates to: SKPMGSTVDQAG*CAGRYCNRNLS
Trigger: GCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGTGGAGCCCATTGGCTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp CACGTGCTGGCACCCAGTGGGTTCACCTCGGTCACATaGATCCGGTACTCACTCCAGAACTCTGCCCCATGG +
Preference number: 6 (lower is better)
Translates to: HVLAPSGFTSVT*IRYSLQNSAPW
Trigger: CCATGGGGCAGAGTTCTGGAGTGAGTACCGGATCAATGTGACCGAGGTGAACCCACTGGGTGCCAGCACGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp TCGGTATTGCAACCGGAACTTGAGCAGAAAGTGGGGTaGGCGACGCCAGGAGGCAGGGTATGTCCAGCTGGC +
Preference number: 6 (lower is better)
Translates to: SVLQPELEQKVG*ATPGGRVCPAG
Trigger: GCCAGCTGGACATACCCTGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp GCTGGATGCTGTGCTGGTCGGTATTGCAACCGGAACTaGAGCAGAAAGTGGGGTTGGCGACGCCAGGAGGCA +
Preference number: 6 (lower is better)
Translates to: AGCCAGRYCNRN*SRKWGWRRQEA
Trigger: TGCCTCCTGGCGTCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp CACCGTGGACCAGGCTGGATGCTGTGCTGGTCGGTATaGCAACCGGAACTTGAGCAGAAAGTGGGGTTGGCG +
Preference number: 6 (lower is better)
Translates to: HRGPGWMLCWSV*QPELEQKVGLA
Trigger: CGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp TTCCACCGGGATCATGGGTGCCAAGAGCCCAGGTTTTaGCGGTCCATCCTTCCCACTCCGTCTCAGCCTCAG +
Preference number: 6 (lower is better)
Translates to: FHRDHGCQEPRF*RSILPTPSQPQ
Trigger: CTGAGGCTGAGACGGAGTGGGAAGGATGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 72 bp CCACCCGCAGTCCTTGGGGTGGATCAGGACGCAAGATaGTCTGTAATCTCACATCCAGTAGGCACGTGCTGG +
Preference number: 6 (lower is better)
Translates to: PPAVLGVDQDAR*SVISHPVGTCW
Trigger: CCAGCACGTGCCTACTGGATGTGAGATTACAGAGCATCTTGCGTCCTGATCCACCCCAAGGACTGCGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 72 bp ACCGTGGACCAGGCTGGATGCTGTGCTGGTCGGTATTaGAACCGGAACTTGAGCAGAAAGTGGGGTTGGCGA +
Preference number: 6 (lower is better)
Translates to: TVDQAGCCAGRY*NRNLSRKWGWR
Trigger: TCGCCAACCCCACTTTCTGCTCAAGTTCCGGTTGCAATACCGACCAGCACAGCATCCAGCCTGGTCCACGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 72 bp ATCCAGAAAGTCCCTGGCACTGACTCGTACCGCGTGTaGCAGCCCAGCCACAGCATCTGTTATCACTTCCTC +
Preference number: 6 (lower is better)
Translates to: IQKVPGTDSYRV*QPSHSICYHFL
Trigger: GAGGAAGTGATAACAGATGCTGTGGCTGGGCTGCCACACGCGGTACGAGTCAGTGCCAGGGACTTTCTGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CAA 72 bp TGTGTCCTAACCCAGAGTCAGGTCCCTGGAGCAGCCTaGAATCTCCATCCCGAAACCAGGACACTGGAGTCC +
Preference number: 6 (lower is better)
Translates to: CVLTQSQVPGAA*NLHPETRTLES
Trigger: GGACTCCAGTGTCCTGGTTTCGGGATGGAGATTCAAGGCTGCTCCAGGGACCTGACTCTGGGTTAGGACACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS GCA 72 bp TGGAATTCCTGGAAGCTTTTCCACCGGGATCATGGGTaGCAAGAGCCCAGGTTTTTGCGGTCCATCCTTCCC +
Preference number: 6 (lower is better)
Translates to: WNSWKLFHRDHG*QEPRFLRSILP
Trigger: GGGAAGGATGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3
CDS CCA 72 bp GGTTTGGAATTCCTGGAAGCTTTTCCACCGGGATCATaGGTGCCAAGAGCCCAGGTTTTTGCGGTCCATCCT +
Preference number: 6 (lower is better)
Translates to: GLEFLEAFPPGS*VPRAQVFAVHP
Trigger: AGGATGGACCGCAAAAACCTGGGCTCTTGGCACCCATGATCCCGGTGGAAAAGCTTCCAGGAATTCCAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098132.11
ENSMUST00000108040.8
ENSMUST00000108041.8
ENSMUST00000108042.3