Pregenerated sensors for IL10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016529Ensembl transcript IDs: ENSMUST00000016673.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGAGGTAATAAATATTTCGGAGAGAGGTACAAACGAGGTTTTCCAAGGAGTTGTGCTCTGTCTAGGTCCTaGAGTCCAGCAGACTCAATA | + |
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Preference number: 2 (lower is better) Translates to: RGNKYFGERYKRGFPRSCALSRS*SPADSI Trigger: TATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGC...ACAACTCCTTGGAAAACCTCGTTTGTACCTCTCTCCGAAATATTTATTACCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| 3UTR TCA 72 bp | ATGAAGCGGCTGGGGGATGACAGTAGGGGAACCCTCTaGGCTGCTGCAGGAATGATCATCAAAGGATCTCCC | + |
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Preference number: 3 (lower is better) Translates to: MKRLGDDSRGTL*AAAGMIIKGSP Trigger: GGGAGATCCTTTGATGATCATTCCTGCAGCAGCTCAGAGGGTTCCCCTACTGTCATCCCCCAGCCGCTTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| 3UTR TCA 72 bp | TCTCTTAGGAGCTCTGAACTCAGGGATGAGAGCAATTaGAAGGACACCATAGCAAAGGGCCCTGCAGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: SLRSSELRDESN*KDTIAKGPAAL Trigger: GAGAGCTGCAGGGCCCTTTGCTATGGTGTCCTTTCAATTGCTCTCATCCCTGAGTTCAGAGCTCCTAAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| 3UTR TCA 72 bp | ATGACAGTAGGGGAACCCTCTGAGCTGCTGCAGGAATaGTCATCAAAGGATCTCCCTGGTTTCTCTTCCCAA | + |
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Preference number: 3 (lower is better) Translates to: MTVGEPSELLQE*SSKDLPGFSSQ Trigger: TTGGGAAGAGAAACCAGGGAGATCCTTTGATGATCATTCCTGCAGCAGCTCAGAGGGTTCCCCTACTGTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CCA 90 bp | CCTCTGAGCTGCTGCAGGAATGATCATCAAAGGATCTCCCTGGTTTCTCTTCCCTCTTCCCGGCTGTACTaGCCCCTGCTGATCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: PLSCCRNDHQRISLVSLPSSRLY*PLLILM Trigger: CATGAGGATCAGCAGGGGCCAGTACAGCCGGGAAGA...GGGAAGAGAAACCAGGGAGATCCTTTGATGATCATTCCTGCAGCAGCTCAGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR TCA 90 bp | TGGATCAGATTTAGAGAGCTCTGTCTAGGTCCTGGAGTCCAGCAGACTCAATACGCCTCAGCCGCATCCTaGGGGTCTTCAGCTTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: WIRFRELCLGPGVQQTQYASAAS*GSSASH Trigger: GTGAGAAGCTGAAGACCCTCAGGATGCGGCTGAGGC...GTATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGCTCTCTAAATCTGATCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR TCA 90 bp | TGGATCAGATTTAGAGAGCTCTGTCTAGGTCCTGGAGTCCAGCAGACTCAATACTGTACTGGCCCCTGCTaGTCCTCATGCCAGTCAGTA | + |
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Preference number: 4 (lower is better) Translates to: WIRFRELCLGPGVQQTQYCTGPC*SSCQSV Trigger: TACTGACTGGCATGAGGATCAGCAGGGGCCAGTACA...GTATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGCTCTCTAAATCTGATCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR GCA 90 bp | TGGATCAGATTTAGAGAGCTCTGTCTAGGTCCTGGAGTCCAGCAGACTCAATACCGACTGGGAAGTGGGTaGAGTTATTGTCTTCCCGGC | + |
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Preference number: 4 (lower is better) Translates to: WIRFRELCLGPGVQQTQYRLGSG*SYCLPG Trigger: GCCGGGAAGACAATAACTGCACCCACTTCCCAGTCG...GTATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGCTCTCTAAATCTGATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR GCA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTTGGGCCATGCTTCTCTaGCTGGGGCATCACTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: SVASLRIEASIASQGRTPWAMLL*LGHHFY Trigger: GTAGAAGTGATGCCCCAGGCAGAGAAGCATGGCCCA...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR GCA 90 bp | TGGATCAGATTTAGAGAGCTCTGTCTAGGTCCTGGAGTCCAGCAGACTCAATACTTGATTTCTGGGCCATaGTTCTCTGCCTGGGGCATC | + |
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Preference number: 4 (lower is better) Translates to: WIRFRELCLGPGVQQTQYLISGP*FSAWGI Trigger: GATGCCCCAGGCAGAGAAGCATGGCCCAGAAATCAA...GTATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGCTCTCTAAATCTGATCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CCA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTAAGAAAGTCTTCACCTaGCTGAAGGCAGTCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SVASLRIEASIASQGRTPKKVFT*LKAVRS Trigger: GCTGCGGACTGCCTTCAGCCAGGTGAAGACTTTCTT...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR GCA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTCCTGCTCCACTGCCTTaGTCTTATTTTCACAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: SVASLRIEASIASQGRTPPAPLP*SYFHRG Trigger: TCCCCTGTGAAAATAAGAGCAAGGCAGTGGAGCAGG...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR GCA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTCCCAGGGAATTCAAATaGTCCTTGATTTCTGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SVASLRIEASIASQGRTPPREFK*SLISGP Trigger: TGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGG...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CCA 90 bp | AGAGGTAATAAATATTTCGGAGAGAGGTACAAACGAGGTTTTCCAAGGAGTTGTAGGAGCATGTGGCTCTaGCCGACTGGGAAGTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: RGNKYFGERYKRGFPRSCRSMWL*PTGKWV Trigger: CACCCACTTCCCAGTCGGCCAGAGCCACATGCTCCT...ACAACTCCTTGGAAAACCTCGTTTGTACCTCTCTCCGAAATATTTATTACCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR TCA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTAATTCAAATGCTCCTTaGTTTCTGGGCCATGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SVASLRIEASIASQGRTPNSNAP*FLGHAS Trigger: AGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATT...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CCA 90 bp | AGAGGTAATAAATATTTCGGAGAGAGGTACAAACGAGGTTTTCCAAGGAGTTGTTGGCCGACTGGGAAGTaGGTGCAGTTATTGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: RGNKYFGERYKRGFPRSCWPTGK*VQLLSS Trigger: GGAAGACAATAACTGCACCCACTTCCCAGTCGGCCA...ACAACTCCTTGGAAAACCTCGTTTGTACCTCTCTCCGAAATATTTATTACCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CCA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTTGTCAAATTCATTCATaGCCTTGTAGACACCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: SVASLRIEASIASQGRTPCQIHS*PCRHLG Trigger: ACCAAGGTGTCTACAAGGCCATGAATGAATTTGACA...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CCA 90 bp | AGAGGTAATAAATATTTCGGAGAGAGGTACAAACGAGGTTTTCCAAGGAGTTGTATGCTCCTTGATTTCTaGGCCATGCTTCTCTGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RGNKYFGERYKRGFPRSCMLLDF*AMLLCL Trigger: CAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCAT...ACAACTCCTTGGAAAACCTCGTTTGTACCTCTCTCCGAAATATTTATTACCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR TCA 90 bp | AGAGGTAATAAATATTTCGGAGAGAGGTACAAACGAGGTTTTCCAAGGAGTTGTAGCTGGTCCTTTGTTTaGAAGAAAGTCTTCACCTGG | + |
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Preference number: 4 (lower is better) Translates to: RGNKYFGERYKRGFPRSCSWSFV*KKVFTW Trigger: CCAGGTGAAGACTTTCTTTCAAACAAAGGACCAGCT...ACAACTCCTTGGAAAACCTCGTTTGTACCTCTCTCCGAAATATTTATTACCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR GCA 90 bp | AGAGGTAATAAATATTTCGGAGAGAGGTACAAACGAGGTTTTCCAAGGAGTTGTAAATCACTCTTCACCTaGTCCACTGCCTTGCTCTTA | + |
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Preference number: 4 (lower is better) Translates to: RGNKYFGERYKRGFPRSCKSLFT*STALLL Trigger: TAAGAGCAAGGCAGTGGAGCAGGTGAAGAGTGATTT...ACAACTCCTTGGAAAACCTCGTTTGTACCTCTCTCCGAAATATTTATTACCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CCA 90 bp | GCAGTCCGCAGCTCTAGGAGCATGTGGCTCTGGCCGACTGGGAAGTaGGTGCAGTTATTGTCTTCCCGGCTGTACTGGCCCCTGCTGATC | + |
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Preference number: 5 (lower is better) Translates to: AVRSSRSMWLWPTGK*VQLLSSRLYWPLLI Trigger: GATCAGCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCCAGTCGGCCAGAGCCACATGCTCCTAGAGCTGCGGACTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CCA 90 bp | TGGCCGACTGGGAAGTGGGTGCAGTTATTGTCTTCCCGGCTGTACTaGCCCCTGCTGATCCTCATGCCAGTCAGTAAGAGCAGGCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: WPTGKWVQLLSSRLY*PLLILMPVSKSRQH Trigger: ATGCTGCCTGCTCTTACTGACTGGCATGAGGATCAGCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCCAGTCGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS TCA 90 bp | GGAAGTGGGTGCAGTTATTGTCTTCCCGGCTGTACTGGCCCCTGCTaGTCCTCATGCCAGTCAGTAAGAGCAGGCAGCATAGCAGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: GSGCSYCLPGCTGPC*SSCQSVRAGSIAVL Trigger: CAGCACTGCTATGCTGCCTGCTCTTACTGACTGGCATGAGGATCAGCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS TCA 90 bp | TGTTGTCCAGCTGGTCCTTTGTTTGAAAGAAAGTCTTCACCTGGCTaGAGGCAGTCCGCAGCTCTAGGAGCATGTGGCTCTGGCCGACTG | + |
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Preference number: 5 (lower is better) Translates to: CCPAGPLFERKSSPG*RQSAALGACGSGRL Trigger: CAGTCGGCCAGAGCCACATGCTCCTAGAGCTGCGGACTGCCTTCAGCCAGGTGAAGACTTTCTTTCAAACAAAGGACCAGCTGGACAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS GCA 90 bp | AGCCGCATCCTGAGGGTCTTCAGCTTCTCACCCAGGGAATTCAAATaGTCCTTGATTTCTGGGCCATGCTTCTCTGCCTGGGGCATCACT | + |
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Preference number: 5 (lower is better) Translates to: SRILRVFSFSPREFK*SLISGPCFSAWGIT Trigger: AGTGATGCCCCAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGTGAGAAGCTGAAGACCCTCAGGATGCGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CAA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTACCTGCTCCACTGCCTaGCTCTTATTTTCACAGGGG | + |
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Preference number: 5 (lower is better) Translates to: SVASLRIEASIASQGRTPTCSTA*LLFSQG Trigger: CCCCTGTGAAAATAAGAGCAAGGCAGTGGAGCAGGT...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS TCA 90 bp | ATTAAGGAGTCGGTTAGCAGTATGTTGTCCAGCTGGTCCTTTGTTTaGAAGAAAGTCTTCACCTGGCTGAAGGCAGTCCGCAGCTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: IKESVSSMLSSWSFV*KKVFTWLKAVRSSR Trigger: CCTAGAGCTGCGGACTGCCTTCAGCCAGGTGAAGACTTTCTTTCAAACAAAGGACCAGCTGGACAACATACTGCTAACCGACTCCTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS GCA 90 bp | ACCCAGGGAATTCAAATGCTCCTTGATTTCTGGGCCATGCTTCTCTaGCTGGGGCATCACTTCTACCAGGTAAAACTGGATCATTTCCGA | + |
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Preference number: 5 (lower is better) Translates to: TQGIQMLLDFWAMLL*LGHHFYQVKLDHFR Trigger: TCGGAAATGATCCAGTTTTACCTGGTAGAAGTGATGCCCCAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CAA 90 bp | AGTGTGGCCAGCCTTAGAATAGAAGCTTCAATTGCTTCCCAAGGAAGAACCCCTCAGCTGGTCCTTTGTTaGAAAGAAAGTCTTCACCTG | + |
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Preference number: 5 (lower is better) Translates to: SVASLRIEASIASQGRTPQLVLC*KESLHL Trigger: CAGGTGAAGACTTTCTTTCAAACAAAGGACCAGCTG...AGGGGTTCTTCCTTGGGAAGCAATTGAAGCTTCTATTCTAAGGCTGGCCACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CAA 90 bp | TGGATCAGATTTAGAGAGCTCTGTCTAGGTCCTGGAGTCCAGCAGACTCAATACTGTCCAGCTGGTCCTTaGTTTGAAAGAAAGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: WIRFRELCLGPGVQQTQYCPAGP*FERKSS Trigger: TGAAGACTTTCTTTCAAACAAAGGACCAGCTGGACA...GTATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGCTCTCTAAATCTGATCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS-3UTR CAA 90 bp | TGGATCAGATTTAGAGAGCTCTGTCTAGGTCCTGGAGTCCAGCAGACTCAATACGTAGACACCTTGGTCTaGGAGCTTATTAAAATCACT | + |
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Preference number: 5 (lower is better) Translates to: WIRFRELCLGPGVQQTQYVDTLV*ELIKIT Trigger: AGTGATTTTAATAAGCTCCAAGACCAAGGTGTCTAC...GTATTGAGTCTGCTGGACTCCAGGACCTAGACAGAGCTCTCTAAATCTGATCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS GCA 72 bp | CTAGGAGCATGTGGCTCTGGCCGACTGGGAAGTGGGTaGAGTTATTGTCTTCCCGGCTGTACTGGCCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: LGACGSGRLGSG*SYCLPGCTGPC Trigger: GCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCCAGTCGGCCAGAGCCACATGCTCCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CCA 72 bp | AGCTCTAGGAGCATGTGGCTCTGGCCGACTGGGAAGTaGGTGCAGTTATTGTCTTCCCGGCTGTACTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: SSRSMWLWPTGK*VQLLSSRLYWP Trigger: GGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCCAGTCGGCCAGAGCCACATGCTCCTAGAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CAA 72 bp | ATGTGGCTCTGGCCGACTGGGAAGTGGGTGCAGTTATaGTCTTCCCGGCTGTACTGGCCCCTGCTGATCCTC | + |
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Preference number: 6 (lower is better) Translates to: MWLWPTGKWVQL*SSRLYWPLLIL Trigger: GAGGATCAGCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCCAGTCGGCCAGAGCCACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CAA 90 bp | TCTAGGAGCATGTGGCTCTGGCCGACTGGGAAGTGGGTGCAGTTATaGTCTTCCCGGCTGTACTGGCCCCTGCTGATCCTCATGCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: SRSMWLWPTGKWVQL*SSRLYWPLLILMPV Trigger: GACTGGCATGAGGATCAGCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCCAGTCGGCCAGAGCCACATGCTCCTAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CCA 72 bp | GGGAAGTGGGTGCAGTTATTGTCTTCCCGGCTGTACTaGCCCCTGCTGATCCTCATGCCAGTCAGTAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GKWVQLLSSRLY*PLLILMPVSKS Trigger: GCTCTTACTGACTGGCATGAGGATCAGCAGGGGCCAGTACAGCCGGGAAGACAATAACTGCACCCACTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS TCA 72 bp | AGGGGAGAAATCGATGACAGCGCCTCAGCCGCATCCTaGGGGTCTTCAGCTTCTCACCCAGGGAATTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: RGEIDDSASAAS*GSSASHPGNSN Trigger: ATTTGAATTCCCTGGGTGAGAAGCTGAAGACCCTCAGGATGCGGCTGAGGCGCTGTCATCGATTTCTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS TCA 72 bp | GCTGGTCCTTTGTTTGAAAGAAAGTCTTCACCTGGCTaGAGGCAGTCCGCAGCTCTAGGAGCATGTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: AGPLFERKSSPG*RQSAALGACGS Trigger: AGAGCCACATGCTCCTAGAGCTGCGGACTGCCTTCAGCCAGGTGAAGACTTTCTTTCAAACAAAGGACCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS CAA 90 bp | ATCCTGAGGGTCTTCAGCTTCTCACCCAGGGAATTCAAATGCTCCTaGATTTCTGGGCCATGCTTCTCTGCCTGGGGCATCACTTCTACC | + |
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Preference number: 6 (lower is better) Translates to: ILRVFSFSPREFKCS*ISGPCFSAWGITST Trigger: GGTAGAAGTGATGCCCCAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGTGAGAAGCTGAAGACCCTCAGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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| CDS TCA 72 bp | TCTTCAGCTTCTCACCCAGGGAATTCAAATGCTCCTTaGTTTCTGGGCCATGCTTCTCTGCCTGGGGCATCA | + |
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Preference number: 6 (lower is better) Translates to: SSASHPGNSNAP*FLGHASLPGAS Trigger: TGATGCCCCAGGCAGAGAAGCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGTGAGAAGCTGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016673.6 |
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