RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IKBKE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042349

Ensembl transcript IDs: ENSMUST00000062108.10, ENSMUST00000159195.2, ENSMUST00000161764.8

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTaGAGAGGCAGGAGAAGCCACAGGAGACGCCTGCTGGTCCTGGGA +
Preference number: 1 (lower is better)
Translates to: AAQETTKNKHSDPAP*RGRRSHRRRLLVLG
Trigger: TCCCAGGACCAGCAGGCGTCTCCTGTGGCTTCTCCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR CCA 90 bp GCTCTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATaGCTGTGGTTGATACTGACCAGCTGTTTCTTAGAACCAAGCGTT +
Preference number: 1 (lower is better)
Translates to: ALSLGLWVPTSVQLA*LWLILTSCFLEPSV
Trigger: AACGCTTGGTTCTAAGAAACAGCTGGTCAGTATCAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR TCA 90 bp GGCCAAGAGGGAGGTAGGCTAGTGAGATGGAACCAGAACTTGCCCTaGATTTGGTCTCACAGTGTAGGGGTACAATATGAATGTTTCTAT +
Preference number: 1 (lower is better)
Translates to: GQEGGRLVRWNQNLP*IWSHSVGVQYECFY
Trigger: ATAGAAACATTCATATTGTACCCCTACACTGTGAGACCAAATTCAGGGCAAGTTCTGGTTCCATCTCACTAGCCTACCTCCCTCTTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR GCA 90 bp AACAGAAAAGGCGATGTATTTATTCCATGTCTGAAGGTGCAGGCCTaGTCTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGC +
Preference number: 1 (lower is better)
Translates to: NRKGDVFIPCLKVQA*SLLRTLGSNICPVS
Trigger: GCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAGAGCAGGCCTGCACCTTCAGACATGGAATAAATACATCGCCTTTTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp GAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTCTGTAGATACTGCCTaGGATGGCCAGGAGTCCCTG +
Preference number: 2 (lower is better)
Translates to: ERERAEPFLSKTRPPEPGSVDTA*DGQESL
Trigger: CAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGA...CCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR TCA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGCGTTTGTGGGTTGCCTaGGGCCAGGGATGGGGACAC +
Preference number: 2 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLRLWVA*GQGWGH
Trigger: GTGTCCCCATCCCTGGCCTCAGGCAACCCACAAACG...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp CTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCTCTGATCCAGCACCCTaGAGAGGCAGGAGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: LNHPLSQMQVHLDQAQRGSDPAP*RGRRSH
Trigger: GTGGCTTCTCCTGCCTCTCCAGGGTGCTGGATCAGA...GCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGGACGCCTGCTGGTCCTaGGAAGTGCAGAGCGTGAGA +
Preference number: 2 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRDACWS*EVQSVR
Trigger: TCTCACGCTCTGCACTTCCCAGGACCAGCAGGCGTC...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCGACGCCTGCTGGTCCTaGGAAGTGCAGAGCGTGAGA +
Preference number: 2 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSDACWS*EVQSVR
Trigger: TCTCACGCTCTGCACTTCCCAGGACCAGCAGGCGTC...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCACAGGAGACGCCTGCTaGTCCTGGGAAGTGCAGAGC +
Preference number: 2 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSTGDAC*SWEVQS
Trigger: GCTCTGCACTTCCCAGGACCAGCAGGCGTCTCCTGT...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR TCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGCCTCCAGAGCCTGGGTaGGGAAGAACAGTCTTGGTG +
Preference number: 2 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRPPEPG*GRTVLV
Trigger: CACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGG...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGTCTGTAGATACTGCCTaGGATGGCCAGGAGTCCCTG +
Preference number: 2 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRSVDTA*DGQESL
Trigger: CAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGA...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp GATGGGGACACTCAGGAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATACAGGAGACGCCTGCTaGTCCTGGGAAGTGCAGAGC +
Preference number: 2 (lower is better)
Translates to: DGDTQEAAQETTKNKHSDTGDAC*SWEVQS
Trigger: GCTCTGCACTTCCCAGGACCAGCAGGCGTCTCCTGT...ATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTCCTGAGTGTCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTATCTGATCCAGCACCCTaGAGAGGCAGGAGAAGCCAC +
Preference number: 2 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLSDPAP*RGRRSH
Trigger: GTGGCTTCTCCTGCCTCTCCAGGGTGCTGGATCAGA...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR TCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGTGTTTCTATTGCTTCTaGGTGCCTTGTGAACCCCCA +
Preference number: 2 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRCFYCF*VPCEPP
Trigger: TGGGGGTTCACAAGGCACTCAGAAGCAATAGAAACA...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR TCA 90 bp AGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAAGAGGACTGTAGGGGTACAATATaGATGTTTCTATTGCTTCTG +
Preference number: 2 (lower is better)
Translates to: RYCLGWPGVPVLAASQEDCRGTI*MFLLLL
Trigger: CAGAAGCAATAGAAACATTCATATTGTACCCCTACA...GTCCTCTTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CCA 90 bp GAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGACAGACCTCCAGAGCCTaGGTGAGGAAGAACAGTCTT +
Preference number: 2 (lower is better)
Translates to: EAAQETTKNKHSDPAPWRQTSRA*VRKNSL
Trigger: AAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTG...TCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR TCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGTTTCTATTGCTTCTaGGTGCCTTGTGAACCCCCA +
Preference number: 2 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRCFYCF*VPCEPP
Trigger: TGGGGGTTCACAAGGCACTCAGAAGCAATAGAAACA...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR TCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGTGTAGGGGTACAATATaGATGTTTCTATTGCTTCTG +
Preference number: 2 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRCRGTI*MFLLLL
Trigger: CAGAAGCAATAGAAACATTCATATTGTACCCCTACA...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR CCA 72 bp CCTGGAGAGGCAGGAGAAGCCACAGGAGACGCCTGCTaGTCCTGGGAAGTGCAGAGCGTGAGAGGGCTGAGC +
Preference number: 3 (lower is better)
Translates to: PGEAGEATGDAC*SWEVQSVRGLS
Trigger: GCTCAGCCCTCTCACGCTCTGCACTTCCCAGGACCAGCAGGCGTCTCCTGTGGCTTCTCCTGCCTCTCCAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR CCA 72 bp GAGGCAGGAGAAGCCACAGGAGACGCCTGCTGGTCCTaGGAAGTGCAGAGCGTGAGAGGGCTGAGCCTTTTC +
Preference number: 3 (lower is better)
Translates to: EAGEATGDACWS*EVQSVRGLSLF
Trigger: GAAAAGGCTCAGCCCTCTCACGCTCTGCACTTCCCAGGACCAGCAGGCGTCTCCTGTGGCTTCTCCTGCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR CCA 72 bp CCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTaGTGTCTTGATAAGGCTGTGGTAGCCGCATGGTCT +
Preference number: 3 (lower is better)
Translates to: PDLQSLGEEEQS*CLDKAVVAAWS
Trigger: AGACCATGCGGCTACCACAGCCTTATCAAGACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR CCA 72 bp GAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTaGAGAGGCAGGAGAAGCCACAGGAGACGCCTGCTG +
Preference number: 3 (lower is better)
Translates to: ETTKNKHSDPAP*RGRRSHRRRLL
Trigger: CAGCAGGCGTCTCCTGTGGCTTCTCCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CAA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGCAAAGTAATGCTAGTTaGTTGGCCAATGGCCAATGG +
Preference number: 3 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGEQSNAS*LANGQW
Trigger: CCATTGGCCATTGGCCAACAAACTAGCATTACTTTG...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR-3UTR CAA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTCAAAGTAATGCTAGTTaGTTGGCCAATGGCCAATGG +
Preference number: 3 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCQSNAS*LANGQW
Trigger: CCATTGGCCATTGGCCAACAAACTAGCATTACTTTG...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR TCA 72 bp GGAGGTAGGCTAGTGAGATGGAACCAGAACTTGCCCTaGATTTGGTCTCACAGTGTAGGGGTACAATATGAA +
Preference number: 3 (lower is better)
Translates to: GGRLVRWNQNLP*IWSHSVGVQYE
Trigger: TTCATATTGTACCCCTACACTGTGAGACCAAATTCAGGGCAAGTTCTGGTTCCATCTCACTAGCCTACCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
3UTR TCA 72 bp AGGAAAACAGAAAAGGCGATGTATTTATTCCATGTCTaGAGGTGCAGGCCTGCTCTCTCCTTAGGACTTTGG +
Preference number: 3 (lower is better)
Translates to: RKTEKAMYLFHV*RCRPALSLGLW
Trigger: CCAAAGTCCTAAGGAGAGAGCAGGCCTGCACCTTCAGACATGGAATAAATACATCGCCTTTTCTGTTTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062108.10
3UTR CCA 72 bp TTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATaGCTGTGGTTGATACTGACCAGCTGTTTCTTAGAA +
Preference number: 3 (lower is better)
Translates to: LGLWVPTSVQLA*LWLILTSCFLE
Trigger: TTCTAAGAAACAGCTGGTCAGTATCAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp AGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAAGAGGACGCCCACCGAAGGGGATaGAGGGCAGACTGCCTGTGG +
Preference number: 4 (lower is better)
Translates to: RYCLGWPGVPVLAASQEDAHRRG*RADCLW
Trigger: CCACAGGCAGTCTGCCCTTCATCCCCTTCGGTGGGC...GTCCTCTTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TGTTGGCCAATGGCCAATGGCCAAGAGGGAGGTAGGCTAGTGAGATGGAACCAGGCCCACCGAAGGGGATaGAGGGCAGACTGCCTGTGG +
Preference number: 4 (lower is better)
Translates to: CWPMANGQEGGRLVRWNQAHRRG*RADCLW
Trigger: CCACAGGCAGTCTGCCCTTCATCCCCTTCGGTGGGC...CTGGTTCCATCTCACTAGCCTACCTCCCTCTTGGCCATTGGCCATTGGCCAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GCAGAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGATCAGGGCCGGGATaGGGAGCCATAGGTTGCGGT +
Preference number: 4 (lower is better)
Translates to: AERERAEPFLSKTRPPEPGSGPG*GAIGCG
Trigger: ACCGCAACCTATGGCTCCTCATCCCGGCCCTGATCC...AGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGCAGACTGCCTGTGGCTaGGTGGTACAGGGTCACCCC +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGEQTACG*VVQGHP
Trigger: GGGGTGACCCTGTACCACGCAGCCACAGGCAGTCTG...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGCTGTGTGGGCGATGTaGTGGGCTGAGAGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGEAVWAM*WAERLG
Trigger: GCCAAGCCTCTCAGCCCAGCACATCGCCCACACAGC...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGGTGTGGGCGATGTGCTaGGCTGAGAGGCTTGGCTCA +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQEVWAMC*AERLGS
Trigger: TGAGCCAAGCCTCTCAGCCCAGCACATCGCCCACAC...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGCTGCTGGCAGCTGTGTaGGCGATGTGCTGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGELLAAV*AMCWAE
Trigger: CTCAGCCCAGCACATCGCCCACACAGCTGCCAGCAG...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGAGATGCAGGTGGTTCTaGGCCCTCTGCACCTGCCTC +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQERCRWF*ALCTCL
Trigger: GAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCT...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGACAGAGTTAGAGGGCTaGTGGCAGCTGTGTGGGCGA +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQETELEG*WQLCGR
Trigger: TCGCCCACACAGCTGCCAGCAGCCCTCTAACTCTGT...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGTGTACACACTGGCAGTaGCCCCCTGCCCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGECTHWQ*PPALAG
Trigger: ACCTGCTAGGGCAGGGGGCCACTGCCAGTGTGTACA...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGGGATGTTGGCCAGGATaGGCACCAGCTGGTTCTGCA +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQEGCWPG*APAGSA
Trigger: TGCAGAACCAGCTGGTGCCCATCCTGGCCAACATCC...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCCGTTTGGCGATGTGCTGGGCTaGGAGGCTTGGCTCAAGGAC +
Preference number: 4 (lower is better)
Translates to: PPTFSNAGASRPSTEGPFGDVLG*EAWLKD
Trigger: GTCCTTGAGCCAAGCCTCTCAGCCCAGCACATCGCC...AAACGGCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTGGAGGGCTGTCCGTGTaGCCTCCAGTGTCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCGGLSV*PPVSAG
Trigger: GCCAGCAGACACTGGAGGTCACACGGACAGCCCTCC...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGTGACCAGCGACACCTaGTACGTCTGCACACACTCC +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGEVTSDT*YVCTHS
Trigger: GGAGTGTGTGCAGACGTATCAGGTGTCGCTGGTCAC...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGACAGAGTTAGAGGGCTaGTGGCAGCTGTGTGGGCGA +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGETELEG*WQLCGR
Trigger: TCGCCCACACAGCTGCCAGCAGCCCTCTAACTCTGT...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTCGCCGATAGCTGGCTaGGTTGAAGACCTTTACAGC +
Preference number: 4 (lower is better)
Translates to: ERERAEPFLSKTRPPEPGSPIAG*VEDLYS
Trigger: GCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGA...CCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGGGAGGGCTGTCCGTGTaGCCTCCAGTGTCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRGGLSV*PPVSAG
Trigger: GCCAGCAGACACTGGAGGTCACACGGACAGCCCTCC...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTGTAGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAACCACAGAGTGGCCAATaGGATGCAGGTGGTTCTGGG +
Preference number: 4 (lower is better)
Translates to: FCRYCLGWPGVPVLAASQPQSGQ*DAGGSG
Trigger: CCCAGAACCACCTGCATCTCATTGGCCACTCTGTGG...TTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGTGGATGACCGTTCGCTaGAGAATGTCACTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQEWMTVR*RMSLVS
Trigger: GGAGACCAGTGACATTCTGCAGCGAACGGTCATCCA...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GCAGAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTTCCTCCTGGAACACCTaGAGCAGCCTCTTGGCTAGA +
Preference number: 4 (lower is better)
Translates to: AERERAEPFLSKTRPPEPSSWNT*SSLLAR
Trigger: TCTAGCCAAGAGGCTGCTGCAGGTGTTCCAGGAGGA...AGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTGTAGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAATCAAGGACACAAGGGTaGCCCTCGAAGAGGTACTCC +
Preference number: 4 (lower is better)
Translates to: FCRYCLGWPGVPVLAASQSRTQG*PSKRYS
Trigger: GGAGTACCTCTTCGAGGGTCACCCTTGTGTCCTTGA...TTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGGCTCCTCATTGTAGCTaGGCCCTGGCCTCATCCTGG +
Preference number: 4 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRAPHCS*ALASSW
Trigger: CCAGGATGAGGCCAGGGCTCAGCTACAATGAGGAGC...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GATGGGGACACTCAGGAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATTGCCGGCTGCCTCCCTaGACCTCAGGAGGTCGCCGA +
Preference number: 4 (lower is better)
Translates to: DGDTQEAAQETTKNKHSDCRLPP*TSGGRR
Trigger: TCGGCGACCTCCTGAGGTTCAGGGAGGCAGCCGGCA...ATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTCCTGAGTGTCCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GCTAGTGAGATGGAACCAGAACTTGCCCTGAATTTGGTCTCACAGTGTAGGGGTGCACCTTCTGCCGGCTaGCTCCCGTTTCCTCCACTG +
Preference number: 4 (lower is better)
Translates to: ASEMEPELALNLVSQCRGAPSAG*LPFPPL
Trigger: CAGTGGAGGAAACGGGAGGCAGCCGGCAGAAGGTGC...ACCCCTACACTGTGAGACCAAATTCAGGGCAAGTTCTGGTTCCATCTCACTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062108.10
CDS-3UTR GCA 90 bp TTCTGTAGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAACAGACAGCTTATAGATaGTCTGCCCCTCCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: FCRYCLGWPGVPVLAASQQTAYR*SAPPRP
Trigger: TGGGCGAGGAGGGGCAGAGCATCTATAAGCTGTCTG...TTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGGCTGTGTGGGCGATGTaGTGGGCTGAGAGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRAVWAM*WAERLG
Trigger: GCCAAGCCTCTCAGCCCAGCACATCGCCCACACAGC...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp CCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCCGTTTGAGTGGCCAATGAGATaGAGGTGGTTCTGGGCCCTC +
Preference number: 4 (lower is better)
Translates to: PPTFSNAGASRPSTEGPFEWPMR*RWFWAL
Trigger: GAGGGCCCAGAACCACCTGCATCTCATTGGCCACTC...AAACGGCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCGGGCCTTGTACACACTaGCAGTGGCCCCCTGCCCTA +
Preference number: 4 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSGPCTH*QWPPAL
Trigger: TAGGGCAGGGGGCCACTGCCAGTGTGTACAAGGCCC...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGGGGCCTTGTACACACTaGCAGTGGCCCCCTGCCCTA +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRGPCTH*QWPPAL
Trigger: TAGGGCAGGGGGCCACTGCCAGTGTGTACAAGGCCC...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTGTGTGGGCGATGTGCTaGGCTGAGAGGCTTGGCTCA +
Preference number: 4 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCVWAMC*AERLGS
Trigger: TGAGCCAAGCCTCTCAGCCCAGCACATCGCCCACAC...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGTGGTTCTTAGCTCTGTaGCCTCCTTTCGTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQEWFLAL*PPFVPG
Trigger: TCCAGGAACGAAAGGAGGCCACAGAGCTAAGAACCA...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGGATAGCTGGCTGAGTTaGAGACCTTTACAGCAACCA +
Preference number: 4 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQEDSWLS*RPLQQP
Trigger: TGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATC...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTGTAGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAATCGCCGATAGCTGGCTaGGTTGAAGACCTTTACAGC +
Preference number: 4 (lower is better)
Translates to: FCRYCLGWPGVPVLAASQSPIAG*VEDLYS
Trigger: GCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGA...TTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTCTTGATAAGGTCAAGGACACAAGGGTaGCCCTCGAAGAGGTACTCC +
Preference number: 4 (lower is better)
Translates to: DQTSRAWVRKNSLGVLIRSRTQG*PSKRYS
Trigger: GGAGTACCTCTTCGAGGGTCACCCTTGTGTCCTTGA...CCTTATCAAGACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGTGCTGGCACGTGTCCTaGAGCACCTCCAGGACCCAA +
Preference number: 4 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLCWHVS*STSRTQ
Trigger: TTGGGTCCTGGAGGTGCTTCAGGACACGTGCCAGCA...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCTGCTGGCACGTGTCCTaGAGCACCTCCAGGACCCAA +
Preference number: 4 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSCWHVS*STSRTQ
Trigger: TTGGGTCCTGGAGGTGCTTCAGGACACGTGCCAGCA...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGGCTCCTCATTGTAGCTaGGCCCTGGCCTCATCCTGG +
Preference number: 4 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLAPHCS*ALASSW
Trigger: CCAGGATGAGGCCAGGGCTCAGCTACAATGAGGAGC...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCGTGACCAGCGACACCTaGTACGTCTGCACACACTCC +
Preference number: 4 (lower is better)
Translates to: RRKGQGESSKHQQLASTTVTSDT*YVCTHS
Trigger: GGAGTGTGTGCAGACGTATCAGGTGTCGCTGGTCAC...GGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCCACAGAGTGGCCAATaGGATGCAGGTGGTTCTGGG +
Preference number: 4 (lower is better)
Translates to: RRKGQGESSKHQQLASTTPQSGQ*DAGGSG
Trigger: CCCAGAACCACCTGCATCTCATTGGCCACTCTGTGG...GGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTCTTGATAAGGCAGACAGCTTATAGATaGTCTGCCCCTCCTCGCCCA +
Preference number: 4 (lower is better)
Translates to: DQTSRAWVRKNSLGVLIRQTAYR*SAPPRP
Trigger: TGGGCGAGGAGGGGCAGAGCATCTATAAGCTGTCTG...CCTTATCAAGACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGACACCAAATGCCTTTTaGTGGGGTTTGCGCAGCACT +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGETPNAF*WGLRST
Trigger: AGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGT...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGCACAGTCACACCAAATaGCTTTTGCTGGGGTTTGCG +
Preference number: 4 (lower is better)
Translates to: VRGLSLFFPRPDLQSLGEHSHTK*LLLGFA
Trigger: CGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTG...CTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTACAGACTGCCTGTGGCTaGGTGGTACAGGGTCACCCC +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLQTACG*VVQGHP
Trigger: GGGGTGACCCTGTACCACGCAGCCACAGGCAGTCTG...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp TGTTGGCCAATGGCCAATGGCCAAGAGGGAGGTAGGCTAGTGAGATGGAACCAGTGGATGACCGTTCGCTaGAGAATGTCACTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: CWPMANGQEGGRLVRWNQWMTVR*RMSLVS
Trigger: GGAGACCAGTGACATTCTGCAGCGAACGGTCATCCA...CTGGTTCCATCTCACTAGCCTACCTCCCTCTTGGCCATTGGCCATTGGCCAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGGAGTGGCCAATGAGATaGAGGTGGTTCTGGGCCCTC +
Preference number: 4 (lower is better)
Translates to: AQETTKNKHSDPAPWRGREWPMR*RWFWAL
Trigger: GAGGGCCCAGAACCACCTGCATCTCATTGGCCACTC...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCTGTACACACTGGCAGTaGCCCCCTGCCCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSCTHWQ*PPALAG
Trigger: ACCTGCTAGGGCAGGGGGCCACTGCCAGTGTGTACA...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTACTGCTGGCAGCTGTGTaGGCGATGTGCTGGGCTGAG +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLLLAAV*AMCWAE
Trigger: CTCAGCCCAGCACATCGCCCACACAGCTGCCAGCAG...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCTGGAGCAGTACTCCATaGTTAGCACCTTCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: RRKGQGESSKHQQLASTTWSSTP*LAPSAG
Trigger: GCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCA...GGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp CTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCGTCTCCGCGAAGAACTaGTCAAAGCCCCAGCACTTA +
Preference number: 4 (lower is better)
Translates to: LNHPLSQMQVHLDQAQRGVSAKN*SKPQHL
Trigger: TAAGTGCTGGGGCTTTGATCAGTTCTTCGCGGAGAC...GCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTCATACATGTCAGGGTaGAGGTATTCCTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: ERERAEPFLSKTRPPEPGSYMSG*RYSSVP
Trigger: TGGTACAGAGGAATACCTGCACCCTGACATGTATGA...CCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGAGGATGGGCACCAGCTaGTTCTGCAGTCCCATGGAC +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRRMGTS*FCSPMD
Trigger: GTCCATGGGACTGCAGAACCAGCTGGTGCCCATCCT...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp CGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCGGTACTCCTGGTGTTTaGGGGTCACGTTGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: RRKGQGESSKHQQLASTTGTPGV*GSRWSA
Trigger: AGCAGACCAACGTGACCCCCAAACACCAGGAGTACC...GGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp CCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCCGTTTCTTAGGGACGAACTTTaGGACATCCAGAGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: PPTFSNAGASRPSTEGPFLRDEL*DIQSRV
Trigger: GACCCTGCTCTGGATGTCCCAAAGTTCGTCCCTAAG...AAACGGCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGCAGGTGGCCACAGAGTaGCCAATGAGATGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLQVATE*PMRCRW
Trigger: CCACCTGCATCTCATTGGCCACTCTGTGGCCACCTG...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGCCATTTTCCTGCTTCTaGGTCCCTGAAATGGCCCCG +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRPFSCF*VPEMAP
Trigger: CGGGGCCATTTCAGGGACTCAGAAGCAGGAAAATGG...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTGTCTCCGCGAAGAACTaGTCAAAGCCCCAGCACTTA +
Preference number: 4 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCVSAKN*SKPQHL
Trigger: TAAGTGCTGGGGCTTTGATCAGTTCTTCGCGGAGAC...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGTCCCGATGGACAATaGCATTCTCCCGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRCPDGQ*HSPAGG
Trigger: ACCACCTGCGGGAGAATGGCATTGTCCATCGGGACA...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCATGTCCCGATGGACAATaGCATTCTCCCGCAGGTGGT +
Preference number: 4 (lower is better)
Translates to: AVSLNHPLSQMQVHLDQACPDGQ*HSPAGG
Trigger: ACCACCTGCGGGAGAATGGCATTGTCCATCGGGACA...TGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTCTTGATAAGGACACCAAATGCCTTTTaGTGGGGTTTGCGCAGCACT +
Preference number: 4 (lower is better)
Translates to: DQTSRAWVRKNSLGVLIRTPNAF*WGLRST
Trigger: AGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGT...CCTTATCAAGACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp CCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCCGTTTCACAGTCACACCAAATaGCTTTTGCTGGGGTTTGCG +
Preference number: 4 (lower is better)
Translates to: PPTFSNAGASRPSTEGPFHSHTK*LLLGFA
Trigger: CGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTG...AAACGGCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTCCTCCTGGAACACCTaGAGCAGCCTCTTGGCTAGA +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRSSWNT*SSLLAR
Trigger: TCTAGCCAAGAGGCTGCTGCAGGTGTTCCAGGAGGA...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAAGGATGGGCACCAGCTaGTTCTGCAGTCCCATGGAC +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLRMGTS*FCSPMD
Trigger: GTCCATGGGACTGCAGAACCAGCTGGTGCCCATCCT...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGATGTTGGCCAGGATaGGCACCAGCTGGTTCTGCA +
Preference number: 4 (lower is better)
Translates to: EAAQETTKNKHSDPAPWRGCWPG*APAGSA
Trigger: TGCAGAACCAGCTGGTGCCCATCCTGGCCAACATCC...TCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGGGTACTCCTGGTGTTTaGGGGTCACGTTGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLGTPGV*GSRWSA
Trigger: AGCAGACCAACGTGACCCCCAAACACCAGGAGTACC...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp CGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCTCGAAGAGGTACTCCTaGTGTTTGGGGGTCACGTTG +
Preference number: 4 (lower is better)
Translates to: RRKGQGESSKHQQLASTTSKRYS*CLGVTL
Trigger: CAACGTGACCCCCAAACACCAGGAGTACCTCTTCGA...GGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp TGTTGGCCAATGGCCAATGGCCAAGAGGGAGGTAGGCTAGTGAGATGGAACCAGATTGTAGCTGAGCCCTaGCCTCATCCTGGATTTCTT +
Preference number: 4 (lower is better)
Translates to: CWPMANGQEGGRLVRWNQIVAEP*PHPGFL
Trigger: AAGAAATCCAGGATGAGGCCAGGGCTCAGCTACAAT...CTGGTTCCATCTCACTAGCCTACCTCCCTCTTGGCCATTGGCCATTGGCCAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GATGGGGACACTCAGGAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATAGATGCAGGTGGTTCTaGGCCCTCTGCACCTGCCTC +
Preference number: 4 (lower is better)
Translates to: DGDTQEAAQETTKNKHSDRCRWF*ALCTCL
Trigger: GAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCT...ATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTCCTGAGTGTCCCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTATTCACGATGTTCTGGTaGTTCAGCCTCCGCAGGACC +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLFTMFW*FSLRRT
Trigger: GGTCCTGCGGAGGCTGAATCACCAGAACATCGTGAA...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062108.10
CDS-3UTR TCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTATGGAGCAGTACTCCATaGTTAGCACCTTCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLWSSTP*LAPSAG
Trigger: GCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCA...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTACCATTTTCCTGCTTCTaGGTCCCTGAAATGGCCCCG +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLPFSCF*VPEMAP
Trigger: CGGGGCCATTTCAGGGACTCAGAAGCAGGAAAATGG...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCACCAGCTGGTTCTaGAGTCCCATGGACAGTCTA +
Preference number: 4 (lower is better)
Translates to: EAAQETTKNKHSDPAPWRGTSWF*SPMDSL
Trigger: TAGACTGTCCATGGGACTGCAGAACCAGCTGGTGCC...TCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGGCACCAGCTGGTTCTaGAGTCCCATGGACAGTCTA +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLGTSWF*SPMDSL
Trigger: TAGACTGTCCATGGGACTGCAGAACCAGCTGGTGCC...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp CCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCCGTTTATCTCTGAGAGAGTCTaGAGCCTGGTTCTTAGCTCT +
Preference number: 4 (lower is better)
Translates to: PPTFSNAGASRPSTEGPFISERV*SLVLSS
Trigger: AGAGCTAAGAACCAGGCTGCAGACTCTCTCAGAGAT...AAACGGCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GATGGGGACACTCAGGAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCCATTCTCCCGCAGGTaGTTCATGCCAGCCACCACA +
Preference number: 4 (lower is better)
Translates to: DGDTQEAAQETTKNKHSDPFSRR*FMPATT
Trigger: TGTGGTGGCTGGCATGAACCACCTGCGGGAGAATGG...ATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTCCTGAGTGTCCCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCTCGAAGAGGTACTCCTaGTGTTTGGGGGTCACGTTG +
Preference number: 4 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSSKRYS*CLGVTL
Trigger: CAACGTGACCCCCAAACACCAGGAGTACCTCTTCGA...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGCTTAGGGACGAACTTTaGGACATCCAGAGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRLRDEL*DIQSRV
Trigger: GACCCTGCTCTGGATGTCCCAAAGTTCGTCCCTAAG...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GATGGGGACACTCAGGAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCAGGTGGCCACAGAGTaGCCAATGAGATGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: DGDTQEAAQETTKNKHSDQVATE*PMRCRW
Trigger: CCACCTGCATCTCATTGGCCACTCTGTGGCCACCTG...ATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTCCTGAGTGTCCCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTGATAGCTGGCTGAGTTaGAGACCTTTACAGCAACCA +
Preference number: 4 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCDSWLS*RPLQQP
Trigger: TGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATC...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCTTTAGACAGGATCTCTaGGAGAGTCTGCAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSFRQDL*ESLQPG
Trigger: ACCAGGCTGCAGACTCTCTCAGAGATCCTGTCTAAA...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GAATCCTCAAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTTTAGACAGGATCTCTaGGAGAGTCTGCAGCCTGGT +
Preference number: 4 (lower is better)
Translates to: ESSKHQQLASTTHFLKCRFRQDL*ESLQPG
Trigger: ACCAGGCTGCAGACTCTCTCAGAGATCCTGTCTAAA...CCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTTGAGGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GCTAGTGAGATGGAACCAGAACTTGCCCTGAATTTGGTCTCACAGTGTAGGGGTTGGTTCTTAGCTCTGTaGCCTCCTTTCGTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ASEMEPELALNLVSQCRGWFLAL*PPFVPG
Trigger: TCCAGGAACGAAAGGAGGCCACAGAGCTAAGAACCA...ACCCCTACACTGTGAGACCAAATTCAGGGCAAGTTCTGGTTCCATCTCACTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGCTCAGGCTCCTTTaGGTTTCTGTGACATTGTGG +
Preference number: 4 (lower is better)
Translates to: AVSLNHPLSQMQVHLDQAQLRLL*VSVTLW
Trigger: CCACAATGTCACAGAAACCCAAAGGAGCCTGAGCTG...TGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGCTGTCCAGAAGGAGCTaGTCAAAGATCTTGTTCAGA +
Preference number: 4 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRLSRRS*SKILFR
Trigger: TCTGAACAAGATCTTTGATCAGCTCCTTCTGGACAG...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGTCATACATGTCAGGGTaGAGGTATTCCTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRSYMSG*RYSSVP
Trigger: TGGTACAGAGGAATACCTGCACCCTGACATGTATGA...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp GCTAGTGAGATGGAACCAGAACTTGCCCTGAATTTGGTCTCACAGTGTAGGGGTATCTCTGAGAGAGTCTaGAGCCTGGTTCTTAGCTCT +
Preference number: 4 (lower is better)
Translates to: ASEMEPELALNLVSQCRGISERV*SLVLSS
Trigger: AGAGCTAAGAACCAGGCTGCAGACTCTCTCAGAGAT...ACCCCTACACTGTGAGACCAAATTCAGGGCAAGTTCTGGTTCCATCTCACTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR GCA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGTCATTACAAAGCTCCTaGATGTGGAAGACCAGGTCC +
Preference number: 4 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLSLQSS*MWKTRS
Trigger: GGACCTGGTCTTCCACATGCAGGAGCTTTGTAATGA...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTACAGCTCAGGCTCCTTTaGGTTTCTGTGACATTGTGG +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLQLRLL*VSVTLW
Trigger: CCACAATGTCACAGAAACCCAAAGGAGCCTGAGCTG...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TGTTGGCCAATGGCCAATGGCCAAGAGGGAGGTAGGCTAGTGAGATGGAACCAGTTGTCCAAACAACACTaGATCTTCTGGATACTTTTG +
Preference number: 4 (lower is better)
Translates to: CWPMANGQEGGRLVRWNQLSKQH*IFWILL
Trigger: CAAAAGTATCCAGAAGATTCAGTGTTGTTTGGACAA...CTGGTTCCATCTCACTAGCCTACCTCCCTCTTGGCCATTGGCCATTGGCCAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CCA 90 bp GAAGCAGCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAATTGTAGCTGAGCCCTaGCCTCATCCTGGATTTCTT +
Preference number: 4 (lower is better)
Translates to: EAAQETTKNKHSDPAPWRIVAEP*PHPGFL
Trigger: AAGAAATCCAGGATGAGGCCAGGGCTCAGCTACAAT...TCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGCTGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTTTGTCCAAACAACACTaGATCTTCTGGATACTTTTG +
Preference number: 4 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCLSKQH*IFWILL
Trigger: CAAAAGTATCCAGAAGATTCAGTGTTGTTTGGACAA...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp GCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCATCTTGGCTAGATGACTaGAATTTACCTTATCCAGCT +
Preference number: 4 (lower is better)
Translates to: AVSLNHPLSQMQVHLDQASWLDD*NLPYPA
Trigger: AGCTGGATAAGGTAAATTTCAGTCATCTAGCCAAGA...TGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR TCA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTATCTTGGCTAGATGACTaGAATTTACCTTATCCAGCT +
Preference number: 4 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLSWLDD*NLPYPA
Trigger: AGCTGGATAAGGTAAATTTCAGTCATCTAGCCAAGA...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp GGGCTCCCCGGGCTTCCGAGTTACAGGTGGCCACAGAGTGGCCAATaGGATGCAGGTGGTTCTGGGCCCTCTGCACCTGCCTCATCCGCT +
Preference number: 5 (lower is better)
Translates to: GLPGLPSYRWPQSGQ*DAGGSGPSAPASSA
Trigger: AGCGGATGAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAACTCGGAAGCCCGGGGAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 90 bp CCCCGGGCTTCCGAGTTACAGGTGGCCACAGAGTGGCCAATGAGATaGAGGTGGTTCTGGGCCCTCTGCACCTGCCTCATCCGCTTGCCG +
Preference number: 5 (lower is better)
Translates to: PRASELQVATEWPMR*RWFWALCTCLIRLP
Trigger: CGGCAAGCGGATGAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAACTCGGAAGCCCGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp CTCTCCTGGGCTCCCCGGGCTTCCGAGTTACAGGTGGCCACAGAGTaGCCAATGAGATGCAGGTGGTTCTGGGCCCTCTGCACCTGCCTC +
Preference number: 5 (lower is better)
Translates to: LSWAPRASELQVATE*PMRCRWFWALCTCL
Trigger: GAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAACTCGGAAGCCCGGGGAGCCCAGGAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp GGTCTTCCAGCACGCTCAGCAGGCTCCCACTGGAGCAGTACTCCATaGTTAGCACCTTCTGCCGGCTGCCTCCCGTTTCCTCCACTGCGA +
Preference number: 5 (lower is better)
Translates to: GLPARSAGSHWSSTP*LAPSAGCLPFPPLR
Trigger: TCGCAGTGGAGGAAACGGGAGGCAGCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCAGTGGGAGCCTGCTGAGCGTGCTGGAAGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS TCA 90 bp AGGAGGGCTGTCCGTGTGACCTCCAGTGTCTGCTGGCACGTGTCCTaGAGCACCTCCAGGACCCAATGTAACCCCCGAAGCATCAACGCC +
Preference number: 5 (lower is better)
Translates to: RRAVRVTSSVCWHVS*STSRTQCNPRSINA
Trigger: GGCGTTGATGCTTCGGGGGTTACATTGGGTCCTGGAGGTGCTTCAGGACACGTGCCAGCAGACACTGGAGGTCACACGGACAGCCCTCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp CTCTGCACCTGCCTCATCCGCTTGCCGTGTGTGACCAGCGACACCTaGTACGTCTGCACACACTCCTCCTGGAACACCTGCAGCAGCCTC +
Preference number: 5 (lower is better)
Translates to: LCTCLIRLPCVTSDT*YVCTHSSWNTCSSL
Trigger: GAGGCTGCTGCAGGTGTTCCAGGAGGAGTGTGTGCAGACGTATCAGGTGTCGCTGGTCACACACGGCAAGCGGATGAGGCAGGTGCAGAG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp GGTGGTTCTGGGCCCTCTGCACCTGCCTCATCCGCTTGCCGTGTGTaGCCAGCGACACCTGATACGTCTGCACACACTCCTCCTGGAACA +
Preference number: 5 (lower is better)
Translates to: GGSGPSAPASSACRV*PATPDTSAHTPPGT
Trigger: TGTTCCAGGAGGAGTGTGTGCAGACGTATCAGGTGTCGCTGGTCACACACGGCAAGCGGATGAGGCAGGTGCAGAGGGCCCAGAACCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp GGTCTTCCAGCACGCTCAGCAGGCTCCCACTGGAGCAGTACTCCATaGTTAGCACCTTCTGCCGGCTGCCTCCCTGAACCTCAGGAGGTC +
Preference number: 5 (lower is better)
Translates to: GLPARSAGSHWSSTP*LAPSAGCLPEPQEV
Trigger: GACCTCCTGAGGTTCAGGGAGGCAGCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCAGTGGGAGCCTGCTGAGCGTGCTGGAAGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161764.8
CDS CCA 90 bp GAGTTACAGGTGGCCACAGAGTGGCCAATGAGATGCAGGTGGTTCTaGGCCCTCTGCACCTGCCTCATCCGCTTGCCGTGTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: ELQVATEWPMRCRWF*ALCTCLIRLPCVTS
Trigger: GCTGGTCACACACGGCAAGCGGATGAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp TGGGCGATGTGCTGGGCTGAGAGGCTTGGCTCAAGGACACAAGGGTaGCCCTCGAAGAGGTACTCCTGGTGTTTGGGGGTCACGTTGGTC +
Preference number: 5 (lower is better)
Translates to: WAMCWAERLGSRTQG*PSKRYSWCLGVTLV
Trigger: GACCAACGTGACCCCCAAACACCAGGAGTACCTCTTCGAGGGTCACCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGCACATCGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp TCGCTGGACATGCTGAACAGAGTTAGAGGGCTGCTGGCAGCTGTGTaGGCGATGTGCTGGGCTGAGAGGCTTGGCTCAAGGACACAAGGG +
Preference number: 5 (lower is better)
Translates to: SLDMLNRVRGLLAAV*AMCWAERLGSRTQG
Trigger: CCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGCACATCGCCCACACAGCTGCCAGCAGCCCTCTAACTCTGTTCAGCATGTCCAGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGCTGTACATGATCTCTTaGTTGCGCCGGGGCCCACCG +
Preference number: 5 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQELYMIS*LRRGPP
Trigger: CGGTGGGCCCCGGCGCAACAAAGAGATCATGTACAG...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GGCTGTGGTAGCCGCATGGTCTCTTCTGTAGATACTGCCTGGGATGGCCAGGAGGCTGGGCTGAGAGGCTaGGCTCAAGGACACAAGGGT +
Preference number: 5 (lower is better)
Translates to: GCGSRMVSSVDTAWDGQEAGLRG*AQGHKG
Trigger: ACCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGC...CTCCTGGCCATCCCAGGCAGTATCTACAGAAGAGACCATGCGGCTACCACAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GCAGAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTACCTGCCTCATCCGCTaGCCGTGTGTGACCAGCGAC +
Preference number: 5 (lower is better)
Translates to: AERERAEPFLSKTRPPEPTCLIR*PCVTSD
Trigger: GTCGCTGGTCACACACGGCAAGCGGATGAGGCAGGT...AGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp CAGCAACCACCTCCCCGGATTTCTTGTTTCGGGCCTTGTACACACTaGCAGTGGCCCCCTGCCCTAGCAGGTCATCAGTATGCCACAGGT +
Preference number: 5 (lower is better)
Translates to: QQPPPRISCFGPCTH*QWPPALAGHQYATG
Trigger: ACCTGTGGCATACTGATGACCTGCTAGGGCAGGGGGCCACTGCCAGTGTGTACAAGGCCCGAAACAAGAAATCCGGGGAGGTGGTTGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
ENSMUST00000161764.8
CDS CCA 90 bp AGAGTCTGCAGCCTGGTTCTTAGCTCTGTGGCCTCCTTTCGTTCCTaGACGTCAGGCATCCCCGCTCCACTGCTGAACCTTTCAGTGCCC +
Preference number: 5 (lower is better)
Translates to: RVCSLVLSSVASFRS*TSGIPAPLLNLSVP
Trigger: GGGCACTGAAAGGTTCAGCAGTGGAGCGGGGATGCCTGACGTCCAGGAACGAAAGGAGGCCACAGAGCTAAGAACCAGGCTGCAGACTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTACATGATCTCTTTGTaGCGCCGGGGCCCACCGAAG +
Preference number: 5 (lower is better)
Translates to: ERERAEPFLSKTRPPEPGYMISL*RRGPPK
Trigger: CTTCGGTGGGCCCCGGCGCAACAAAGAGATCATGTA...CCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp TTCTGTAGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAAACCTGCCTCATCCGCTaGCCGTGTGTGACCAGCGAC +
Preference number: 5 (lower is better)
Translates to: FCRYCLGWPGVPVLAASQTCLIR*PCVTSD
Trigger: GTCGCTGGTCACACACGGCAAGCGGATGAGGCAGGT...TTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp GGTGACACCTCAGCTCCCTGTTCGGAAGCTCTGTCCAGAAGGAGCTaGTCAAAGATCTTGTTCAGACTCTCCTGGGCTCCCCGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: GDTSAPCSEALSRRS*SKILFRLSWAPRAS
Trigger: GGAAGCCCGGGGAGCCCAGGAGAGTCTGAACAAGATCTTTGATCAGCTCCTTCTGGACAGAGCTTCCGAACAGGGAGCTGAGGTGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp CTGCCGGCTGCCTCCCTGAACCTCAGGAGGTCGCCGATAGCTGGCTaGGTTGAAGACCTTTACAGCAACCACCTCCCCGGATTTCTTGTT +
Preference number: 5 (lower is better)
Translates to: LPAASLNLRRSPIAG*VEDLYSNHLPGFLV
Trigger: AACAAGAAATCCGGGGAGGTGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGACCTCCTGAGGTTCAGGGAGGCAGCCGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161764.8
CDS GCA 90 bp CTCAGCAGGCTCCCACTGGAGCAGTACTCCATGATTAGCACCTTCTaGCGGCTGCCTCCCGTTTCCTCCACTGCGAATAGCTTCACGATG +
Preference number: 5 (lower is better)
Translates to: LSRLPLEQYSMISTF*RLPPVSSTANSFTM
Trigger: CATCGTGAAGCTATTCGCAGTGGAGGAAACGGGAGGCAGCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCAGTGGGAGCCTGCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS CCA 90 bp ACTGATCAAAGCCCCAGCACTTATCCTCTTCCACCTCCAGGATGTTaGCCAGGATGGGCACCAGCTGGTTCTGCAGTCCCATGGACAGTC +
Preference number: 5 (lower is better)
Translates to: TDQSPSTYPLPPPGC*PGWAPAGSAVPWTV
Trigger: GACTGTCCATGGGACTGCAGAACCAGCTGGTGCCCATCCTGGCCAACATCCTGGAGGTGGAAGAGGATAAGTGCTGGGGCTTTGATCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GCAGAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTTTCTTGTTTCGGGCCTaGTACACACTGGCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: AERERAEPFLSKTRPPEPFLFRA*YTLAVA
Trigger: GGCCACTGCCAGTGTGTACAAGGCCCGAAACAAGAA...AGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp TTCTGTAGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAAAGGTACTCCTGGTGTTaGGGGGTCACGTTGGTCTGC +
Preference number: 5 (lower is better)
Translates to: FCRYCLGWPGVPVLAASQRYSWC*GVTLVC
Trigger: GCAGACCAACGTGACCCCCAAACACCAGGAGTACCT...TTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCTACAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp AGATACTGCCTGGGATGGCCAGGAGTCCCTGTCCTAGCTGCTTCCCAAGAGGACTCGATGAGTCGGTTGTaGTCCTGGAGATCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: RYCLGWPGVPVLAASQEDSMSRL*SWRSKA
Trigger: GGCCTTTGATCTCCAGGACAACAACCGACTCATCGA...GTCCTCTTGGGAAGCAGCTAGGACAGGGACTCCTGGCCATCCCAGGCAGTATCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp ACTCCCTCACCTGAACCTCAGGAGGTCGCCGATAGCTGGCTGAGTTaGAGACCTTTACAGCAACCACCTCCCCGGATTTCTTGTTTCGGG +
Preference number: 5 (lower is better)
Translates to: TPSPEPQEVADSWLS*RPLQQPPPRISCFG
Trigger: CCCGAAACAAGAAATCCGGGGAGGTGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGACCTCCTGAGGTTCAGGTGAGGGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS-3UTR CAA 90 bp TGTTGGCCAATGGCCAATGGCCAAGAGGGAGGTAGGCTAGTGAGATGGAACCAGCACACCAAATGCCTTTaGCTGGGGTTTGCGCAGCAC +
Preference number: 5 (lower is better)
Translates to: CWPMANGQEGGRLVRWNQHTKCL*LGFAQH
Trigger: GTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTG...CTGGTTCCATCTCACTAGCCTACCTCCCTCTTGGCCATTGGCCATTGGCCAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GAGCGTGAGAGGGCTGAGCCTTTTCTTTCCAAGACCAGACCTCCAGAGCCTGGGACAGCTCAGGCTCCTTaGGGTTTCTGTGACATTGTG +
Preference number: 5 (lower is better)
Translates to: ERERAEPFLSKTRPPEPGTAQAP*GFCDIV
Trigger: CACAATGTCACAGAAACCCAAAGGAGCCTGAGCTGT...CCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAAAAGGCTCAGCCCTCTCACGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp ACCCCAATACTCCAGAGATCCACAGTCACACCAAATGCCTTTTGCTaGGGTTTGCGCAGCACTGCACGCTCATACATGTCAGGGTGCAGG +
Preference number: 5 (lower is better)
Translates to: TPILQRSTVTPNAFC*GLRSTARSYMSGCR
Trigger: CCTGCACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAGTATTGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp TTCTTTCCAAGACCAGACCTCCAGAGCCTGGGTGAGGAAGAACAGTCTTGGTGTAGGTACTCCTGGTGTTaGGGGGTCACGTTGGTCTGC +
Preference number: 5 (lower is better)
Translates to: FFPRPDLQSLGEEEQSWCRYSWC*GVTLVC
Trigger: GCAGACCAACGTGACCCCCAAACACCAGGAGTACCT...ACACCAAGACTGTTCTTCCTCACCCAGGCTCTGGAGGTCTGGTCTTGGAAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCGCTGGGCTGAGAGGCTaGGCTCAAGGACACAAGGGT +
Preference number: 5 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSAGLRG*AQGHKG
Trigger: ACCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGC...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 90 bp CTCAAACTCCCTCACCTGAACCTCAGGAGGTCGCCGATAGCTGGCTaGGTTGAAGACCTTTACAGCAACCACCTCCCCGGATTTCTTGTT +
Preference number: 5 (lower is better)
Translates to: LKLPHLNLRRSPIAG*VEDLYSNHLPGFLV
Trigger: AACAAGAAATCCGGGGAGGTGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGACCTCCTGAGGTTCAGGTGAGGGAGTTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS TCA 90 bp TGGATGACCGTTCGCTGCAGAATGTCACTGGTCTCCGCGAAGAACTaGTCAAAGCCCCAGCACTTATCCTCTTCCACCTCCAGGATGTTG +
Preference number: 5 (lower is better)
Translates to: WMTVRCRMSLVSAKN*SKPQHLSSSTSRML
Trigger: CAACATCCTGGAGGTGGAAGAGGATAAGTGCTGGGGCTTTGATCAGTTCTTCGCGGAGACCAGTGACATTCTGCAGCGAACGGTCATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp GCTCAAGGACACAAGGGTGACCCTCGAAGAGGTACTCCTGGTGTTTaGGGGTCACGTTGGTCTGCTCATATACAGCCTCCAAAAAGATGG +
Preference number: 5 (lower is better)
Translates to: AQGHKGDPRRGTPGV*GSRWSAHIQPPKRW
Trigger: CCATCTTTTTGGAGGCTGTATATGAGCAGACCAACGTGACCCCCAAACACCAGGAGTACCTCTTCGAGGGTCACCCTTGTGTCCTTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTACTGTACATGATCTCTTaGTTGCGCCGGGGCCCACCG +
Preference number: 5 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLLYMIS*LRRGPP
Trigger: CGGTGGGCCCCGGCGCAACAAAGAGATCATGTACAG...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 90 bp TACTCCAGAGATCCACAGTCACACCAAATGCCTTTTGCTGGGGTTTaGGCAGCACTGCACGCTCATACATGTCAGGGTGCAGGTATTCCT +
Preference number: 5 (lower is better)
Translates to: YSRDPQSHQMPFAGV*AALHAHTCQGAGIP
Trigger: AGGAATACCTGCACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 90 bp ATCCACAGTCACACCAAATGCCTTTTGCTGGGGTTTGCGCAGCACTaGACGCTCATACATGTCAGGGTGCAGGTATTCCTCTGTACCATA +
Preference number: 5 (lower is better)
Translates to: IHSHTKCLLLGFAQH*TLIHVRVQVFLCTI
Trigger: TATGGTACAGAGGAATACCTGCACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 90 bp TCTGTGACATTGTGGGAACATTTAGACAGGATCTCTGAGAGAGTCTaGAGCCTGGTTCTTAGCTCTGTGGCCTCCTTTCGTTCCTGGACG +
Preference number: 5 (lower is better)
Translates to: SVTLWEHLDRISERV*SLVLSSVASFRSWT
Trigger: CGTCCAGGAACGAAAGGAGGCCACAGAGCTAAGAACCAGGCTGCAGACTCTCTCAGAGATCCTGTCTAAATGTTCCCACAATGTCACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp AAGGGTGACCCTCGAAGAGGTACTCCTGGTGTTTGGGGGTCACGTTaGTCTGCTCATATACAGCCTCCAAAAAGATGGCAATCGTGTTGT +
Preference number: 5 (lower is better)
Translates to: KGDPRRGTPGVWGSR*SAHIQPPKRWQSCC
Trigger: ACAACACGATTGCCATCTTTTTGGAGGCTGTATATGAGCAGACCAACGTGACCCCCAAACACCAGGAGTACCTCTTCGAGGGTCACCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTATTCTTGTTTCGGGCCTaGTACACACTGGCAGTGGCC +
Preference number: 5 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLFLFRA*YTLAVA
Trigger: GGCCACTGCCAGTGTGTACAAGGCCCGAAACAAGAA...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp AAAGCACCAGCAGTTAGCCTCAACCACCCACTTTCTCAAATGCAGGTGCATCTACACACCAAATGCCTTTaGCTGGGGTTTGCGCAGCAC +
Preference number: 5 (lower is better)
Translates to: KAPAVSLNHPLSQMQVHLHTKCL*LGFAQH
Trigger: GTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTG...TAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAGGCTAACTGCTGGTGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp AAGCGTTCCTCGGAGAAAAGGTCAAGGAGAATCCTCAAAGCACCAGCAGTTAGCTCGATGAGTCGGTTGTaGTCCTGGAGATCAAAGGCC +
Preference number: 5 (lower is better)
Translates to: KRSSEKRSRRILKAPAVSSMSRL*SWRSKA
Trigger: GGCCTTTGATCTCCAGGACAACAACCGACTCATCGA...GCTAACTGCTGGTGCTTTGAGGATTCTCCTTGACCTTTTCTCCGAGGAACGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp CTCTCCTTAGGACTTTGGGTTCCAACATCTGTCCAGTTAGCATGGCTGTGGTTGACAGCTCAGGCTCCTTaGGGTTTCTGTGACATTGTG +
Preference number: 5 (lower is better)
Translates to: LSLGLWVPTSVQLAWLWLTAQAP*GFCDIV
Trigger: CACAATGTCACAGAAACCCAAAGGAGCCTGAGCTGT...CAACCACAGCCATGCTAACTGGACAGATGTTGGAACCCAAAGTCCTAAGGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp CTCAACCACCCACTTTCTCAAATGCAGGTGCATCTAGACCAAGCACAGAGGGGCTTTACCTTATCCAGCTaGTGGATCTGCTCCTCATTG +
Preference number: 5 (lower is better)
Translates to: LNHPLSQMQVHLDQAQRGFTLSS*WICSSL
Trigger: CAATGAGGAGCAGATCCACAAGCTGGATAAGGTAAA...GCCCCTCTGTGCTTGGTCTAGATGCACCTGCATTTGAGAAAGTGGGTGGTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS-3UTR CAA 90 bp GCACAGGAAACAACCAAGAATAAGCATTCTGATCCAGCACCCTGGAGAGGCAGGTTTACCTTATCCAGCTaGTGGATCTGCTCCTCATTG +
Preference number: 5 (lower is better)
Translates to: AQETTKNKHSDPAPWRGRFTLSS*WICSSL
Trigger: CAATGAGGAGCAGATCCACAAGCTGGATAAGGTAAA...CCTGCCTCTCCAGGGTGCTGGATCAGAATGCTTATTCTTGGTTGTTTCCTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 90 bp GCCGATGGAACTCTATGTAACCGTTCGATGAGTCGGTTGTTGTCCTaGAGATCAAAGGCCAATAGCTTCATATCATTACAAAGCTCCTGC +
Preference number: 5 (lower is better)
Translates to: ADGTLCNRSMSRLLS*RSKANSFISLQSSC
Trigger: GCAGGAGCTTTGTAATGATATGAAGCTATTGGCCTTTGATCTCCAGGACAACAACCGACTCATCGAACGGTTACATAGAGTTCCATCGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp AGGGCTGCTGGCAGCTGTGTGGGCGATGTGCTGGGCTaGGAGGCTTGGCTCAAGGACACAAGGGTGACCCTC +
Preference number: 6 (lower is better)
Translates to: RAAGSCVGDVLG*EAWLKDTRVTL
Trigger: GAGGGTCACCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGCACATCGCCCACACAGCTGCCAGCAGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp GCTCCCCGGGCTTCCGAGTTACAGGTGGCCACAGAGTaGCCAATGAGATGCAGGTGGTTCTGGGCCCTCTGC +
Preference number: 6 (lower is better)
Translates to: APRASELQVATE*PMRCRWFWALC
Trigger: GCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAACTCGGAAGCCCGGGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 90 bp GAGGGCTGCTGGCAGCTGTGTGGGCGATGTGCTGGGCTGAGAGGCTaGGCTCAAGGACACAAGGGTGACCCTCGAAGAGGTACTCCTGGT +
Preference number: 6 (lower is better)
Translates to: EGCWQLCGRCAGLRG*AQGHKGDPRRGTPG
Trigger: ACCAGGAGTACCTCTTCGAGGGTCACCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGCACATCGCCCACACAGCTGCCAGCAGCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp GGGCCCTCTGCACCTGCCTCATCCGCTTGCCGTGTGTaGCCAGCGACACCTGATACGTCTGCACACACTCCT +
Preference number: 6 (lower is better)
Translates to: GPSAPASSACRV*PATPDTSAHTP
Trigger: AGGAGTGTGTGCAGACGTATCAGGTGTCGCTGGTCACACACGGCAAGCGGATGAGGCAGGTGCAGAGGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp GGGCTTCCGAGTTACAGGTGGCCACAGAGTGGCCAATaGGATGCAGGTGGTTCTGGGCCCTCTGCACCTGCC +
Preference number: 6 (lower is better)
Translates to: GLPSYRWPQSGQ*DAGGSGPSAPA
Trigger: GGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAACTCGGAAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp CGGATCAGGGCCGGGATGAGGAGCCATAGGTTGCGGTaGCACCTCAGCTCCCTGTTCGGAAGCTCTGTCCAG +
Preference number: 6 (lower is better)
Translates to: RIRAGMRSHRLR*HLSSLFGSSVQ
Trigger: CTGGACAGAGCTTCCGAACAGGGAGCTGAGGTGTCACCGCAACCTATGGCTCCTCATCCCGGCCCTGATCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp GAGTGGCCAATGAGATGCAGGTGGTTCTGGGCCCTCTaGACCTGCCTCATCCGCTTGCCGTGTGTGACCAGC +
Preference number: 6 (lower is better)
Translates to: EWPMRCRWFWAL*TCLIRLPCVTS
Trigger: GCTGGTCACACACGGCAAGCGGATGAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp GCACGCTCAGCAGGCTCCCACTGGAGCAGTACTCCATaGTTAGCACCTTCTGCCGGCTGCCTCCCGTTTCCT +
Preference number: 6 (lower is better)
Translates to: ARSAGSHWSSTP*LAPSAGCLPFP
Trigger: AGGAAACGGGAGGCAGCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCAGTGGGAGCCTGCTGAGCGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS TCA 72 bp GTCCGTGTGACCTCCAGTGTCTGCTGGCACGTGTCCTaGAGCACCTCCAGGACCCAATGTAACCCCCGAAGC +
Preference number: 6 (lower is better)
Translates to: VRVTSSVCWHVS*STSRTQCNPRS
Trigger: GCTTCGGGGGTTACATTGGGTCCTGGAGGTGCTTCAGGACACGTGCCAGCAGACACTGGAGGTCACACGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp ATGTGGAAGACCAGGTCCTTCGGATCAGGGCCGGGATaGGGAGCCATAGGTTGCGGTGACACCTCAGCTCCC +
Preference number: 6 (lower is better)
Translates to: MWKTRSFGSGPG*GAIGCGDTSAP
Trigger: GGGAGCTGAGGTGTCACCGCAACCTATGGCTCCTCATCCCGGCCCTGATCCGAAGGACCTGGTCTTCCACAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp CCCACCGAAGGGGATGAAGGGCAGACTGCCTGTGGCTaGGTGGTACAGGGTCACCCCAATACTCCAGAGATC +
Preference number: 6 (lower is better)
Translates to: PTEGDEGQTACG*VVQGHPNTPEI
Trigger: GATCTCTGGAGTATTGGGGTGACCCTGTACCACGCAGCCACAGGCAGTCTGCCCTTCATCCCCTTCGGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp CCCTCCTCGCCCACCAGGCGCATGATGTTCCCAGGTTaGATGTCCCGATGGACAATGCCATTCTCCCGCAGG +
Preference number: 6 (lower is better)
Translates to: PSSPTRRMMFPG*MSRWTMPFSRR
Trigger: CCTGCGGGAGAATGGCATTGTCCATCGGGACATCAAACCTGGGAACATCATGCGCCTGGTGGGCGAGGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp TGCTGGGCTGAGAGGCTTGGCTCAAGGACACAAGGGTaGCCCTCGAAGAGGTACTCCTGGTGTTTGGGGGTC +
Preference number: 6 (lower is better)
Translates to: CWAERLGSRTQG*PSKRYSWCLGV
Trigger: GACCCCCAAACACCAGGAGTACCTCTTCGAGGGTCACCCTTGTGTCCTTGAGCCAAGCCTCTCAGCCCAGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp GCCTCCCTGAACCTCAGGAGGTCGCCGATAGCTGGCTaGGTTGAAGACCTTTACAGCAACCACCTCCCCGGA +
Preference number: 6 (lower is better)
Translates to: ASLNLRRSPIAG*VEDLYSNHLPG
Trigger: TCCGGGGAGGTGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGACCTCCTGAGGTTCAGGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161764.8
CDS CCA 72 bp AGCCCCAGCACTTATCCTCTTCCACCTCCAGGATGTTaGCCAGGATGGGCACCAGCTGGTTCTGCAGTCCCA +
Preference number: 6 (lower is better)
Translates to: SPSTYPLPPPGC*PGWAPAGSAVP
Trigger: TGGGACTGCAGAACCAGCTGGTGCCCATCCTGGCCAACATCCTGGAGGTGGAAGAGGATAAGTGCTGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp ATGCTGAACAGAGTTAGAGGGCTGCTGGCAGCTGTGTaGGCGATGTGCTGGGCTGAGAGGCTTGGCTCAAGG +
Preference number: 6 (lower is better)
Translates to: MLNRVRGLLAAV*AMCWAERLGSR
Trigger: CCTTGAGCCAAGCCTCTCAGCCCAGCACATCGCCCACACAGCTGCCAGCAGCCCTCTAACTCTGTTCAGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp TTACAGGTGGCCACAGAGTGGCCAATGAGATGCAGGTaGTTCTGGGCCCTCTGCACCTGCCTCATCCGCTTG +
Preference number: 6 (lower is better)
Translates to: LQVATEWPMRCR*FWALCTCLIRL
Trigger: CAAGCGGATGAGGCAGGTGCAGAGGGCCCAGAACCACCTGCATCTCATTGGCCACTCTGTGGCCACCTGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 90 bp ATGCTCTGCCCCTCCTCGCCCACCAGGCGCATGATGTTCCCAGGTTaGATGTCCCGATGGACAATGCCATTCTCCCGCAGGTGGTTCATG +
Preference number: 6 (lower is better)
Translates to: MLCPSSPTRRMMFPG*MSRWTMPFSRRWFM
Trigger: CATGAACCACCTGCGGGAGAATGGCATTGTCCATCGGGACATCAAACCTGGGAACATCATGCGCCTGGTGGGCGAGGAGGGGCAGAGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp CCTCACCTGAACCTCAGGAGGTCGCCGATAGCTGGCTaGGTTGAAGACCTTTACAGCAACCACCTCCCCGGA +
Preference number: 6 (lower is better)
Translates to: PHLNLRRSPIAG*VEDLYSNHLPG
Trigger: TCCGGGGAGGTGGTTGCTGTAAAGGTCTTCAACTCAGCCAGCTATCGGCGACCTCCTGAGGTTCAGGTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS GCA 72 bp CTCCCACTGGAGCAGTACTCCATGATTAGCACCTTCTaGCGGCTGCCTCCCGTTTCCTCCACTGCGAATAGC +
Preference number: 6 (lower is better)
Translates to: LPLEQYSMISTF*RLPPVSSTANS
Trigger: GCTATTCGCAGTGGAGGAAACGGGAGGCAGCCGGCAGAAGGTGCTAATCATGGAGTACTGCTCCAGTGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS CCA 72 bp CCTCCCCGGATTTCTTGTTTCGGGCCTTGTACACACTaGCAGTGGCCCCCTGCCCTAGCAGGTCATCAGTAT +
Preference number: 6 (lower is better)
Translates to: PPRISCFGPCTH*QWPPALAGHQY
Trigger: ATACTGATGACCTGCTAGGGCAGGGGGCCACTGCCAGTGTGTACAAGGCCCGAAACAAGAAATCCGGGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
ENSMUST00000161764.8
CDS CCA 72 bp TTGATGTCCCGATGGACAATGCCATTCTCCCGCAGGTaGTTCATGCCAGCCACCACACAGCGCAGCACCACT +
Preference number: 6 (lower is better)
Translates to: LMSRWTMPFSRR*FMPATTQRSTT
Trigger: AGTGGTGCTGCGCTGTGTGGTGGCTGGCATGAACCACCTGCGGGAGAATGGCATTGTCCATCGGGACATCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp AGCCTGGTTCTTAGCTCTGTGGCCTCCTTTCGTTCCTaGACGTCAGGCATCCCCGCTCCACTGCTGAACCTT +
Preference number: 6 (lower is better)
Translates to: SLVLSSVASFRS*TSGIPAPLLNL
Trigger: AAGGTTCAGCAGTGGAGCGGGGATGCCTGACGTCCAGGAACGAAAGGAGGCCACAGAGCTAAGAACCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp GCTGGCTTCTCTGTGGTGATTCTGTACATGATCTCTTaGTTGCGCCGGGGCCCACCGAAGGGGATGAAGGGC +
Preference number: 6 (lower is better)
Translates to: AGFSVVILYMIS*LRRGPPKGMKG
Trigger: GCCCTTCATCCCCTTCGGTGGGCCCCGGCGCAACAAAGAGATCATGTACAGAATCACCACAGAGAAGCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp CGGATTTCTTGTTTCGGGCCTTGTACACACTGGCAGTaGCCCCCTGCCCTAGCAGGTCATCAGTATGCCACA +
Preference number: 6 (lower is better)
Translates to: RISCFGPCTHWQ*PPALAGHQYAT
Trigger: TGTGGCATACTGATGACCTGCTAGGGCAGGGGGCCACTGCCAGTGTGTACAAGGCCCGAAACAAGAAATCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
ENSMUST00000161764.8
CDS CAA 72 bp GGCTTCTCTGTGGTGATTCTGTACATGATCTCTTTGTaGCGCCGGGGCCCACCGAAGGGGATGAAGGGCAGA +
Preference number: 6 (lower is better)
Translates to: GFSVVILYMISL*RRGPPKGMKGR
Trigger: TCTGCCCTTCATCCCCTTCGGTGGGCCCCGGCGCAACAAAGAGATCATGTACAGAATCACCACAGAGAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp CACAAGGGTGACCCTCGAAGAGGTACTCCTGGTGTTTaGGGGTCACGTTGGTCTGCTCATATACAGCCTCCA +
Preference number: 6 (lower is better)
Translates to: HKGDPRRGTPGV*GSRWSAHIQPP
Trigger: TGGAGGCTGTATATGAGCAGACCAACGTGACCCCCAAACACCAGGAGTACCTCTTCGAGGGTCACCCTTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 90 bp GGTCACCCCAATACTCCAGAGATCCACAGTCACACCAAATGCCTTTaGCTGGGGTTTGCGCAGCACTGCACGCTCATACATGTCAGGGTG +
Preference number: 6 (lower is better)
Translates to: GHPNTPEIHSHTKCL*LGFAQHCTLIHVRV
Trigger: CACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAGTATTGGGGTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS TCA 72 bp GTTTCCTCCACTGCGAATAGCTTCACGATGTTCTGGTaGTTCAGCCTCCGCAGGACCTCAAACTCCCTCACC +
Preference number: 6 (lower is better)
Translates to: VSSTANSFTMFW*FSLRRTSNSLT
Trigger: GGTGAGGGAGTTTGAGGTCCTGCGGAGGCTGAATCACCAGAACATCGTGAAGCTATTCGCAGTGGAGGAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000159195.2
CDS TCA 72 bp GTTCGCTGCAGAATGTCACTGGTCTCCGCGAAGAACTaGTCAAAGCCCCAGCACTTATCCTCTTCCACCTCC +
Preference number: 6 (lower is better)
Translates to: VRCRMSLVSAKN*SKPQHLSSSTS
Trigger: GGAGGTGGAAGAGGATAAGTGCTGGGGCTTTGATCAGTTCTTCGCGGAGACCAGTGACATTCTGCAGCGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp CACACCAAATGCCTTTTGCTGGGGTTTGCGCAGCACTaGACGCTCATACATGTCAGGGTGCAGGTATTCCTC +
Preference number: 6 (lower is better)
Translates to: HTKCLLLGFAQH*TLIHVRVQVFL
Trigger: GAGGAATACCTGCACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp AGATCCACAGTCACACCAAATGCCTTTTGCTGGGGTTaGCGCAGCACTGCACGCTCATACATGTCAGGGTGC +
Preference number: 6 (lower is better)
Translates to: RSTVTPNAFCWG*RSTARSYMSGC
Trigger: GCACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp CTCCAGAGATCCACAGTCACACCAAATGCCTTTTGCTaGGGTTTGCGCAGCACTGCACGCTCATACATGTCA +
Preference number: 6 (lower is better)
Translates to: LQRSTVTPNAFC*GLRSTARSYMS
Trigger: TGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp CCCTCGAAGAGGTACTCCTGGTGTTTGGGGGTCACGTaGGTCTGCTCATATACAGCCTCCAAAAAGATGGCA +
Preference number: 6 (lower is better)
Translates to: PSKRYSWCLGVT*VCSYTASKKMA
Trigger: TGCCATCTTTTTGGAGGCTGTATATGAGCAGACCAACGTGACCCCCAAACACCAGGAGTACCTCTTCGAGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 90 bp ATACTCCAGAGATCCACAGTCACACCAAATGCCTTTTGCTGGGGTTaGCGCAGCACTGCACGCTCATACATGTCAGGGTGCAGGTATTCC +
Preference number: 6 (lower is better)
Translates to: ILQRSTVTPNAFCWG*RSTARSYMSGCRYS
Trigger: GGAATACCTGCACCCTGACATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp ATACTCCAGAGATCCACAGTCACACCAAATGCCTTTTaGTGGGGTTTGCGCAGCACTGCACGCTCATACATG +
Preference number: 6 (lower is better)
Translates to: ILQRSTVTPNAF*WGLRSTARSYM
Trigger: CATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp CCTCGAAGAGGTACTCCTGGTGTTTGGGGGTCACGTTaGTCTGCTCATATACAGCCTCCAAAAAGATGGCAA +
Preference number: 6 (lower is better)
Translates to: PRRGTPGVWGSR*SAHIQPPKRWQ
Trigger: TTGCCATCTTTTTGGAGGCTGTATATGAGCAGACCAACGTGACCCCCAAACACCAGGAGTACCTCTTCGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp AAGAGGTACTCCTGGTGTTTGGGGGTCACGTTGGTCTaGTCATATACAGCCTCCAAAAAGATGGCAATCGTG +
Preference number: 6 (lower is better)
Translates to: KRYSWCLGVTLV*SYTASKKMAIV
Trigger: CACGATTGCCATCTTTTTGGAGGCTGTATATGAGCAGACCAACGTGACCCCCAAACACCAGGAGTACCTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp TTGTGGGAACATTTAGACAGGATCTCTGAGAGAGTCTaGAGCCTGGTTCTTAGCTCTGTGGCCTCCTTTCGT +
Preference number: 6 (lower is better)
Translates to: LWEHLDRISERV*SLVLSSVASFR
Trigger: ACGAAAGGAGGCCACAGAGCTAAGAACCAGGCTGCAGACTCTCTCAGAGATCCTGTCTAAATGTTCCCACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS GCA 72 bp TCAAAGGCCAATAGCTTCATATCATTACAAAGCTCCTaGATGTGGAAGACCAGGTCCTTCGGATCAGGGCCG +
Preference number: 6 (lower is better)
Translates to: SKANSFISLQSS*MWKTRSFGSGP
Trigger: CGGCCCTGATCCGAAGGACCTGGTCTTCCACATGCAGGAGCTTTGTAATGATATGAAGCTATTGGCCTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp AATACTCCAGAGATCCACAGTCACACCAAATGCCTTTaGCTGGGGTTTGCGCAGCACTGCACGCTCATACAT +
Preference number: 6 (lower is better)
Translates to: NTPEIHSHTKCL*LGFAQHCTLIH
Trigger: ATGTATGAGCGTGCAGTGCTGCGCAAACCCCAGCAAAAGGCATTTGGTGTGACTGTGGATCTCTGGAGTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp GCCGATGGAACTCTATGTAACCGTTCGATGAGTCGGTaGTTGTCCTGGAGATCAAAGGCCAATAGCTTCATA +
Preference number: 6 (lower is better)
Translates to: ADGTLCNRSMSR*LSWRSKANSFI
Trigger: TATGAAGCTATTGGCCTTTGATCTCCAGGACAACAACCGACTCATCGAACGGTTACATAGAGTTCCATCGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 90 bp TCTGGTGCCGATGGAACTCTATGTAACCGTTCGATGAGTCGGTTGTaGTCCTGGAGATCAAAGGCCAATAGCTTCATATCATTACAAAGC +
Preference number: 6 (lower is better)
Translates to: SGADGTLCNRSMSRL*SWRSKANSFISLQS
Trigger: GCTTTGTAATGATATGAAGCTATTGGCCTTTGATCTCCAGGACAACAACCGACTCATCGAACGGTTACATAGAGTTCCATCGGCACCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 90 bp ACATCTGGTGCCGATGGAACTCTATGTAACCGTTCGATGAGTCGGTaGTTGTCCTGGAGATCAAAGGCCAATAGCTTCATATCATTACAA +
Preference number: 6 (lower is better)
Translates to: TSGADGTLCNRSMSR*LSWRSKANSFISLQ
Trigger: TTGTAATGATATGAAGCTATTGGCCTTTGATCTCCAGGACAACAACCGACTCATCGAACGGTTACATAGAGTTCCATCGGCACCAGATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CAA 72 bp GATGGAACTCTATGTAACCGTTCGATGAGTCGGTTGTaGTCCTGGAGATCAAAGGCCAATAGCTTCATATCA +
Preference number: 6 (lower is better)
Translates to: DGTLCNRSMSRL*SWRSKANSFIS
Trigger: TGATATGAAGCTATTGGCCTTTGATCTCCAGGACAACAACCGACTCATCGAACGGTTACATAGAGTTCCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8
CDS CCA 72 bp ACTCTATGTAACCGTTCGATGAGTCGGTTGTTGTCCTaGAGATCAAAGGCCAATAGCTTCATATCATTACAA +
Preference number: 6 (lower is better)
Translates to: TLCNRSMSRLLS*RSKANSFISLQ
Trigger: TTGTAATGATATGAAGCTATTGGCCTTTGATCTCCAGGACAACAACCGACTCATCGAACGGTTACATAGAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062108.10
ENSMUST00000161764.8