Pregenerated sensors for IK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024474Ensembl transcript IDs: ENSMUST00000007042.6
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGCAGTTTGCAACCGTCTaGGGAATTGTAGAAGCAAGC | + |
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Preference number: 2 (lower is better) Translates to: LMEHAGHGVALPLILACGQFATV*GIVEAS Trigger: GCTTGCTTCTACAATTCCTCAGACGGTTGCAAACTG...CCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| 3UTR CCA 72 bp | GCAGGTTTAACTACATTTAATGGAACATGCTGGACATaGTGTTGCATTGCCATTAATCTTAGCATGTGGGAC | + |
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Preference number: 3 (lower is better) Translates to: AGLTTFNGTCWT*CCIAINLSMWD Trigger: GTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAAATGTAGTTAAACCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| 3UTR GCA 72 bp | TTAACTACATTTAATGGAACATGCTGGACATGGTGTTaGATTGCCATTAATCTTAGCATGTGGGACACAGAT | + |
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Preference number: 3 (lower is better) Translates to: LTTFNGTCWTWC*IAINLSMWDTD Trigger: ATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAAATGTAGTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR TCA 90 bp | AATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACCCCCTGCCTCAGGTATaGCAAAATCTGGGTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: NGTCWTWCCIAINLSMWDPLPQV*QNLGEL Trigger: AAGCTCACCCAGATTTTGTCATACCTGAGGCAGGGG...GTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR TCA 90 bp | GGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAATCGCTGTATTCCTCCTaGGTATCGAAGTCCCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: GHGVALPLILACGTQIYKSLYSS*VSKSQR Trigger: CCGCTGGGACTTCGATACTCAGGAGGAATACAGCGA...TTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR GCA 90 bp | GGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAGATGCCATACTGGAATaGAGCCTTGGGCAGAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GHGVALPLILACGTQIYKDAILE*SLGQSL Trigger: GAGGCTCTGCCCAAGGCTGCATTCCAGTATGGCATC...TTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR GCA 90 bp | GGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAACACTTCGACCCCATCTaGTTCCATCCTCTTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GHGVALPLILACGTQIYKHFDPI*FHPLPL Trigger: AAGAGGAAGAGGATGGAAGCAGATGGGGTCGAAGTG...TTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | TTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGGTCATCCATCGTGGCTaGATAGCATTCTGCGTAACT | + |
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Preference number: 4 (lower is better) Translates to: LMEHAGHGVALPLILACGVIHRG*IAFCVT Trigger: AGTTACGCAGAATGCTATCCAGCCACGATGGATGAC...CCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | GGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAGAGTTAACTGGAATGCAGCCTTaGGCAGAGCCTCCTTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: GVALPLILACGTQIYKELTGMQP*AEPPCC Trigger: ACAACAAGGAGGCTCTGCCCAAGGCTGCATTCCAGT...TAACTCTTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR TCA 90 bp | GTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAGAGTTATACTCTCTTCTCTGCTGCTaGTTTGTCCGCCTCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: VALPLILACGTQIYKELYSLLCC*FVRLSS Trigger: ACTGCTGAGGCGGACAAATCAGCAGCAGAGAAGAGA...GTATAACTCTTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | GGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAATCTTGATGCCATACTaGAATGCAGCCTTGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GHGVALPLILACGTQIYKILMPY*NAALGR Trigger: TCTGCCCAAGGCTGCATTCCAGTATGGCATCAAGAT...TTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR TCA 90 bp | AATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACTTCATTGGTAAGTTTTaGTTGGTGGAAGGAATGAGG | + |
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Preference number: 4 (lower is better) Translates to: NGTCWTWCCIAINLSMWDFIGKF*LVEGMR Trigger: CCTCATTCCTTCCACCAATCAAAACTTACCAATGAA...GTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR TCA 90 bp | CATTTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTTCAGCGCGCACCTTTTaGAGCAACGCAAAATCCAAA | + |
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Preference number: 4 (lower is better) Translates to: HLMEHAGHGVALPLILACSARTF*SNAKSK Trigger: TTTGGATTTTGCGTTGCTTCAAAAGGTGCGCGCTGA...ACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | TATAAACTTTCACAAACAACAACAGTTTGCAACCGTCTGAGGAATTGTAGAAGCCCATGTCATCCATCGTaGCTGGATAGCATTCTGCGT | + |
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Preference number: 4 (lower is better) Translates to: YKLSQTTTVCNRLRNCRSPCHPS*LDSILR Trigger: ACGCAGAATGCTATCCAGCCACGATGGATGACATGG...GCTTCTACAATTCCTCAGACGGTTGCAAACTGTTGTTGTTTGTGAAAGTTTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR GCA 90 bp | CTTTCACAAACAACAACAGTTTGCAACCGTCTGAGGAATTGTAGAAGCAAGCAACTTGATCAACTCTTTTaGAGATCCAGGTCCTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: LSQTTTVCNRLRNCRSKQLDQLF*RSRSFV Trigger: GACAAAGGACCTGGATCTGCAAAAGAGTTGATCAAG...TTGCTTGCTTCTACAATTCCTCAGACGGTTGCAAACTGTTGTTGTTTGTGAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR GCA 90 bp | AATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACCCTCTTCTCAATGATTaGACTTATTTTCTTCCACTG | + |
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Preference number: 4 (lower is better) Translates to: NGTCWTWCCIAINLSMWDPLLND*TYFLPL Trigger: CAGTGGAAGAAAATAAGTGCAATCATTGAGAAGAGG...GTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | GGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAGAGTTACCCTGTAGTTGGCTGTaGTACTTATCAGCTCAGTTT | + |
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Preference number: 4 (lower is better) Translates to: GVALPLILACGTQIYKELPCSWL*YLSAQF Trigger: AAACTGAGCTGATAAGTACCACAGCCAACTACAGGG...TAACTCTTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | CTTTCACAAACAACAACAGTTTGCAACCGTCTGAGGAATTGTAGAAGCAAGCAACTGCTTCTTATCTTCTaGCTTCTTCAACGATTCAGT | + |
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Preference number: 4 (lower is better) Translates to: LSQTTTVCNRLRNCRSKQLLLIF*LLQRFS Trigger: ACTGAATCGTTGAAGAAGCCAGAAGATAAGAAGCAG...TTGCTTGCTTCTACAATTCCTCAGACGGTTGCAAACTGTTGTTGTTTGTGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| 3UTR CAA 72 bp | CTACATTTAATGGAACATGCTGGACATGGTGTTGCATaGCCATTAATCTTAGCATGTGGGACACAGATCTAT | + |
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Preference number: 4 (lower is better) Translates to: LHLMEHAGHGVA*PLILACGTQIY Trigger: ATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAAATGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR GCA 90 bp | CATTTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTCTGTCGATCAAGCTCTaGCTTATCATTGGTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: HLMEHAGHGVALPLILACLSIKL*LIIGFF Trigger: AAAGAAACCAATGATAAGGCAGAGCTTGATCGACAG...ACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAAATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | GTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAGAGTTATACCTTTGTCAACATCCATaGGCTCATCATCCACTTTTG | + |
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Preference number: 4 (lower is better) Translates to: VALPLILACGTQIYKELYLCQHP*AHHPLL Trigger: CAAAAGTGGATGATGAGCCCATGGATGTTGACAAAG...GTATAACTCTTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CCA 90 bp | GGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAAGAGTTAAGGTATGACAAAATCTaGGTGAGCTTGCTAATAACA | + |
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Preference number: 4 (lower is better) Translates to: GVALPLILACGTQIYKELRYDKI*VSLLIT Trigger: TGTTATTAGCAAGCTCACCCAGATTTTGTCATACCT...TAACTCTTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | TTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGGTGGGGCAATCAGCTTaGCTGCGTATGAGAGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: LMEHAGHGVALPLILACGVGQSA*LRMRVV Trigger: CACCACTCTCATACGCAGCAAAGCTGATTGCCCCAC...CCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | CTTTCACAAACAACAACAGTTTGCAACCGTCTGAGGAATTGTAGAAGCAAGCAATACTGGAATGCAGCCTaGGGCAGAGCCTCCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LSQTTTVCNRLRNCRSKQYWNAA*GRASLL Trigger: CAACAAGGAGGCTCTGCCCAAGGCTGCATTCCAGTA...TTGCTTGCTTCTACAATTCCTCAGACGGTTGCAAACTGTTGTTGTTTGTGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | GGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGACACAGATCTATAAACCTCATTGTACTCCCTaGGCATCTCATGGTGACGTG | + |
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Preference number: 5 (lower is better) Translates to: GHGVALPLILACGTQIYKPHCTP*ASHGDV Trigger: CACGTCACCATGAGATGCCAAGGGAGTACAATGAGG...TTTATAGATCTGTGTCCCACATGCTAAGATTAATGGCAATGCAACACCATGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | TTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGCTCAGCGCGCACCTTTaGAAGCAACGCAAAATCCAA | + |
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Preference number: 5 (lower is better) Translates to: LMEHAGHGVALPLILACGLSAHL*KQRKIQ Trigger: TTGGATTTTGCGTTGCTTCAAAAGGTGCGCGCTGAG...CCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | TTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGCTCTCTCTCAATTTCTaGCTGGCGAAGCTTGGCATA | + |
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Preference number: 5 (lower is better) Translates to: LMEHAGHGVALPLILACGLSLNF*LAKLGI Trigger: TATGCCAAGCTTCGCCAGCAAGAAATTGAGAGAGAG...CCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | CTTTCACAAACAACAACAGTTTGCAACCGTCTGAGGAATTGTAGAAGCAAGCAATATCTCTCACGTTCCTaGTCCCGAGGTGTCTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LSQTTTVCNRLRNCRSKQYLSRS*SRGVLV Trigger: AACCAAGACACCTCGGGACAAGGAACGTGAGAGATA...TTGCTTGCTTCTACAATTCCTCAGACGGTTGCAAACTGTTGTTGTTTGTGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | TTAATGGAACATGCTGGACATGGTGTTGCATTGCCATTAATCTTAGCATGTGGGGGATCCTCATCTTTCTaGGTTTCCTTTTGGGGCTTT | + |
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Preference number: 5 (lower is better) Translates to: LMEHAGHGVALPLILACGGSSSF*VSFWGF Trigger: AAAGCCCCAAAAGGAAACCAAGAAAGATGAGGATCC...CCCACATGCTAAGATTAATGGCAATGCAACACCATGTCCAGCATGTTCCATTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS-3UTR CAA 90 bp | TATAAACTTTCACAAACAACAACAGTTTGCAACCGTCTGAGGAATTGTAGAAGCCCTAAGGGACCCTTCTaGTTACCCTGGTCCATTTTG | + |
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Preference number: 5 (lower is better) Translates to: YKLSQTTTVCNRLRNCRSPKGPF*LPWSIL Trigger: CAAAATGGACCAGGGTAACAAGAAGGGTCCCTTAGG...GCTTCTACAATTCCTCAGACGGTTGCAAACTGTTGTTGTTTGTGAAAGTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS TCA 72 bp | GTAAGAACAGCTCATTTCGCTCATATGATTTACTCTTaGAAAGCATCCGATACACATTCCGGCCAAGGCGTG | + |
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Preference number: 6 (lower is better) Translates to: VRTAHFAHMIYS*KASDTHSGQGV Trigger: CACGCCTTGGCCGGAATGTGTATCGGATGCTTTTCAAGAGTAAATCATATGAGCGAAATGAGCTGTTCTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS CAA 72 bp | GGTAAGAACAGCTCATTTCGCTCATATGATTTACTCTaGAAAAGCATCCGATACACATTCCGGCCAAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: GKNSSFRSYDLL*KSIRYTFRPRR Trigger: ACGCCTTGGCCGGAATGTGTATCGGATGCTTTTCAAGAGTAAATCATATGAGCGAAATGAGCTGTTCTTACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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| CDS CAA 90 bp | ATACGTCCTGGTAAGAACAGCTCATTTCGCTCATATGATTTACTCTaGAAAAGCATCCGATACACATTCCGGCCAAGGCGTGTTTTAAAT | + |
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Preference number: 6 (lower is better) Translates to: IRPGKNSSFRSYDLL*KSIRYTFRPRRVLN Trigger: ATTTAAAACACGCCTTGGCCGGAATGTGTATCGGATGCTTTTCAAGAGTAAATCATATGAGCGAAATGAGCTGTTCTTACCAGGACGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007042.6 |
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