Pregenerated sensors for IHH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006538Ensembl transcript IDs: ENSMUST00000164097.4
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGTGGCCTaGAGGGAAGGTCATGTTTCGGGATGTCCAGGCTGGCTGTGGTCT | + |
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Preference number: 1 (lower is better) Translates to: PPIDSKGSGGWRSVA*REGHVSGCPGWLWS Trigger: AGACCACAGCCAGCCTGGACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 90 bp | TCGGGGCCCAGCAAACCTGGTCAAGTCTCAATGGTGTCTCCACTCTaGCACAGAGGACGGAGACAACCTCAGGCCAGGTGCCTTCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: SGPSKPGQVSMVSPL*HRGRRQPQARCLPG Trigger: CCCTGGAAGGCACCTGGCCTGAGGTTGTCTCCGTCCTCTGTGCCAGAGTGGAGACACCATTGAGACTTGACCAGGTTTGCTGGGCCCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 90 bp | AGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGTaGCCTGCAGGGAAGGTCATGTTTCGGGATGTCCAGGCTGGCTGT | + |
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Preference number: 1 (lower is better) Translates to: RLRPLTAKAQEAGGV*PAGKVMFRDVQAGC Trigger: ACAGCCAGCCTGGACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 90 bp | CCCGGATCAGAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTaGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCCA | + |
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Preference number: 1 (lower is better) Translates to: PGSETPPIDSKGSGG*RSVACREGHVSGCP Trigger: TGGACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTCTGATCCGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR TCA 90 bp | TCGGGATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATaGGTCCAGCCAGCTCCCTGCTGGCTTCAAGGGAATCTAGCAGCA | + |
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Preference number: 1 (lower is better) Translates to: SGCPGWLWSFSSGRQ*VQPAPCWLQGNLAA Trigger: TGCTGCTAGATTCCCTTGAAGCCAGCAGGGAGCTGGCTGGACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATCCCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 90 bp | AGGTCATGTTTCGGGATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTaGGAGGCAATGAGTCCAGCCAGCTCCCTGCTGGCTTCAAGGGAA | + |
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Preference number: 1 (lower is better) Translates to: RSCFGMSRLAVVFQF*EAMSPASSLLASRE Trigger: TTCCCTTGAAGCCAGCAGGGAGCTGGCTGGACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATCCCGAAACATGACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR TCA 90 bp | GCCTACCACACGCTTGTCAGCTCAGTTCACAGCTCTACACCAAGATaGAGGTTCGGGGCCCAGCAAACCTGGTCAAGTCTCAATGGTGTC | + |
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Preference number: 1 (lower is better) Translates to: AYHTLVSSVHSSTPR*RFGAQQTWSSLNGV Trigger: GACACCATTGAGACTTGACCAGGTTTGCTGGGCCCCGAACCTTCATCTTGGTGTAGAGCTGTGAACTGAGCTGACAAGCGTGTGGTAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR TCA 90 bp | CGACTGAGGTGCAAGCCCATCTACGGGCAGCCTCTCTTCATACTGTaGTCAGTTGCCAACAGTAAAGTCACAATCCCAGGCCCCGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: RLRCKPIYGQPLFIL*SVANSKVTIPGPEK Trigger: TTTCTCGGGGCCTGGGATTGTGACTTTACTGTTGGCAACTGATCACAGTATGAAGAGAGGCTGCCCGTAGATGGGCTTGCACCTCAGTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 90 bp | ATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATaGAATGCGTGTGAAGAATCGCAGCCAGAGCTAGCTGGGTCTTAC | + |
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Preference number: 1 (lower is better) Translates to: IPGPEKHWSKQSKDR*NACEESQPELAGSY Trigger: GTAAGACCCAGCTAGCTCTGGCTGCGATTCTTCACACGCATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR GCA 90 bp | GGCTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCAACCTCAGGCCAGGTaGCTTCCAGGGCCAGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: GSGGWRSVACREGHVSGCQPQAR*LPGPEP Trigger: AGGCTCTGGCCCTGGAAGGCACCTGGCCTGAGGTTG...ACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR TCA 90 bp | CCGGATCAGAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGAGCTCTACACCAAGATaGAGGTTCGGGGCCCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: PDQRLRPLTAKAQEAGGVSSTPR*RFGAQQ Trigger: TTGCTGGGCCCCGAACCTTCATCTTGGTGTAGAGCT...CACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTCTGATCCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR GCA 90 bp | GCTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCGTCCAGCCAGCTCCCTaGTGGCTTCAAGGGAATCTA | + |
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Preference number: 2 (lower is better) Translates to: AQEAGGVWPAGKVMFRDVVQPAP*WLQGNL Trigger: TAGATTCCCTTGAAGCCAGCAGGGAGCTGGCTGGAC...GACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR CCA 90 bp | CCGGATCAGAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGGGGGCCCAGCAAACCTaGTCAAGTCTCAATGGTGTC | + |
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Preference number: 2 (lower is better) Translates to: PDQRLRPLTAKAQEAGGVGAQQT*SSLNGV Trigger: GACACCATTGAGACTTGACCAGGTTTGCTGGGCCCC...CACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTCTGATCCGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR CCA 90 bp | GCTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCCAGCCAGCTCCCTGCTaGCTTCAAGGGAATCTAGCA | + |
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Preference number: 2 (lower is better) Translates to: AQEAGGVWPAGKVMFRDVQPAPC*LQGNLA Trigger: TGCTAGATTCCCTTGAAGCCAGCAGGGAGCTGGCTG...GACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR CCA 90 bp | CCGGATCAGAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGGTGGTCTTTCAGTTCTaGGAGGCAATGAGTCCAGCC | + |
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Preference number: 2 (lower is better) Translates to: PDQRLRPLTAKAQEAGGVVVFQF*EAMSPA Trigger: GGCTGGACTCATTGCCTCCCAGAACTGAAAGACCAC...CACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTCTGATCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR GCA 72 bp | AGGCCCCTTCCCCAGTCCCAGGTAGTAGGGTCACATTaGCCGGATCAGAGACTCCGCCCATTGACAGCAAAG | + |
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Preference number: 3 (lower is better) Translates to: RPLPQSQVVGSH*PDQRLRPLTAK Trigger: CTTTGCTGTCAATGGGCGGAGTCTCTGATCCGGGCAATGTGACCCTACTACCTGGGACTGGGGAAGGGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 72 bp | TTCGGGATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTaGGAGGCAATGAGTCCAGCCAGCTCCCTGCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: FGMSRLAVVFQF*EAMSPASSLLA Trigger: AGCCAGCAGGGAGCTGGCTGGACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATCCCGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 72 bp | GAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTaGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCG | + |
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Preference number: 3 (lower is better) Translates to: ETPPIDSKGSGG*RSVACREGHVS Trigger: CGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 72 bp | AGCAAACCTGGTCAAGTCTCAATGGTGTCTCCACTCTaGCACAGAGGACGGAGACAACCTCAGGCCAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: SKPGQVSMVSPL*HRGRRQPQARC Trigger: GCACCTGGCCTGAGGTTGTCTCCGTCCTCTGTGCCAGAGTGGAGACACCATTGAGACTTGACCAGGTTTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR TCA 72 bp | ACGCTTGTCAGCTCAGTTCACAGCTCTACACCAAGATaGAGGTTCGGGGCCCAGCAAACCTGGTCAAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: TLVSSVHSSTPR*RFGAQQTWSSL Trigger: GAGACTTGACCAGGTTTGCTGGGCCCCGAACCTTCATCTTGGTGTAGAGCTGTGAACTGAGCTGACAAGCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CCA 72 bp | CCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATaGAATGCGTGTGAAGAATCGCAGCCAGAGCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: PEKHWSKQSKDR*NACEESQPELA Trigger: AGCTAGCTCTGGCTGCGATTCTTCACACGCATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR-3UTR CAA 90 bp | TGTTTCGGGATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATGAGTTCATACTGTGATCAGTaGCCAACAGTAAAGTCACAA | + |
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Preference number: 3 (lower is better) Translates to: CFGMSRLAVVFQFWEAMSSYCDQ*PTVKSQ Trigger: TTGTGACTTTACTGTTGGCAACTGATCACAGTATGA...ACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATCCCGAAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | CTCCACTCTGGCACAGAGGACGGAGACAACCTCAGGCCAGGTGCCTTCCAGGGCGGCCAGAAGGCCAACTaGGCCAGATGGTGGTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LHSGTEDGDNLRPGAFQGGQKAN*ARWWSA Trigger: GGCTGACCACCATCTGGCTCAGTTGGCCTTCTGGCC...GCCCTGGAAGGCACCTGGCCTGAGGTTGTCTCCGTCCTCTGTGCCAGAGTGGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | GCTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCTCCCATCCTCCCCCATaGCCAGCACCCGGTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: AQEAGGVWPAGKVMFRDVSHPPP*PAPGLL Trigger: CAGGAGACCGGGTGCTGGCCATGGGGGAGGATGGGA...GACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | CTCCACTCTGGCACAGAGGACGGAGACAACCTCAGGCCAGGTGCCTTCCAGGGCGTGTCCCATGCCTTGTaGGAGGAGCATAGGACCCAA | + |
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Preference number: 4 (lower is better) Translates to: LHSGTEDGDNLRPGAFQGVSHAL*EEHRTQ Trigger: TTGGGTCCTATGCTCCTCTCACAAGGCATGGGACAC...GCCCTGGAAGGCACCTGGCCTGAGGTTGTCTCCGTCCTCTGTGCCAGAGTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | CTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCCTTCTCTAGGCGCACCTaGGCTCCGGCAGGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LRRLEECGLQGRSCFGMSFSRRT*APAGKQ Trigger: CTGCTTTCCTGCCGGAGCCCAGGTGCGCCTAGAGAA...GGACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | CCGGATCAGAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGGACAGAGATGGCCAGTaGGTTCAGACGGTCCTTGCA | + |
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Preference number: 4 (lower is better) Translates to: PDQRLRPLTAKAQEAGGVDRDGQ*VQTVLA Trigger: TGCAAGGACCGTCTGAACTCACTGGCCATCTCTGTC...CACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTCTGATCCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | CTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCCCCGAATGCTCAGACTTaGCAGAGCAATGCACGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LRRLEECGLQGRSCFGMSPNAQT*QSNARG Trigger: CCCACGTGCATTGCTCTGTCAAGTCTGAGCATTCGG...GGACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | CCGGATCAGAGACTCCGCCCATTGACAGCAAAGGCTCAGGAGGCTGGAGGAGTGGATCCTGAGTCTCGATaGCCTGGAAAGCTCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: PDQRLRPLTAKAQEAGGVDPESR*PGKLSA Trigger: GGCTGAGAGCTTTCCAGGTCATCGAGACTCAGGATC...CACTCCTCCAGCCTCCTGAGCCTTTGCTGTCAATGGGCGGAGTCTCTGATCCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | GATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATGAGTCCAGCCAGTGGCCTGGTTGCACATaGCTGGCAAATGTGGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: DVQAGCGLSVLGGNESSQWPGCT*LANVAR Trigger: CCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCA...CTGGCTGGACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | GATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATGAGTCCAGCCAGTGCCCCATGCCAAACTaGGAAACAGTCGCAGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: DVQAGCGLSVLGGNESSQCPMPN*ETVAGA Trigger: GGCCCCTGCGACTGTTTCCCAGTTTGGCATGGGGCA...CTGGCTGGACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | CAATGGTGTCTCCACTCTGGCACAGAGGACGGAGACAACCTCAGGCCAGGTGCCCCCAGACATGCCCAGTaGATGGAAGGTGCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: QWCLHSGTEDGDNLRPGAPRHAQ*MEGALF Trigger: GAAGAGAGCACCTTCCATCCACTGGGCATGTCTGGG...GGCACCTGGCCTGAGGTTGTCTCCGTCCTCTGTGCCAGAGTGGAGACACCATTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | GATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATGAGTCCAGCCAGCGACGCGGAGGATCCTaGGTCTCGATGACCTGGAAA | + |
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Preference number: 4 (lower is better) Translates to: DVQAGCGLSVLGGNESSQRRGGS*VSMTWK Trigger: TTTCCAGGTCATCGAGACTCAGGATCCTCCGCGTCG...CTGGCTGGACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| 3UTR CAA 72 bp | AAGGCCCCTTCCCCAGTCCCAGGTAGTAGGGTCACATaGCCCGGATCAGAGACTCCGCCCATTGACAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: KAPSPVPGSRVT*PGSETPPIDSK Trigger: TTTGCTGTCAATGGGCGGAGTCTCTGATCCGGGCAATGTGACCCTACTACCTGGGACTGGGGAAGGGGCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | AGCTGGGTCTTACGGTCTCTAGGAAAAGAGAGCCTACCACACGCTTGTCAGCTCCCGGCACGTTGGGGCTaGACTGCTTGTAGGCAAGAG | + |
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Preference number: 4 (lower is better) Translates to: SWVLRSLGKESLPHACQLPARWG*TACRQE Trigger: CTCTTGCCTACAAGCAGTTCAGCCCCAACGTGCCGG...GAGCTGACAAGCGTGTGGTAGGCTCTCTTTTCCTAGAGACCGTAAGACCCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR TCA 90 bp | CAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAATGCACGGTCTGAGGTGGTaGTATCCACCGCGCGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: QSQAPRNIGVSSPKTDGMHGLRW*YPPRGP Trigger: AGGGCCGCGCGGTGGATATCACCACCTCAGACCGTG...CATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTCTTACGGTCTCTAGGAAAAGAGAGCCTACCACACGCTTGTCAGCTCCATGGCTGGCAAATGTaGCCCGGAAGTGGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SWVLRSLGKESLPHACQLHGWQM*PGSGLL Trigger: CAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATG...GAGCTGACAAGCGTGTGGTAGGCTCTCTTTTCCTAGAGACCGTAAGACCCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | CAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAATGGACCCAAGGGCCACGTaGGTGGAGACAGCTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: QSQAPRNIGVSSPKTDGMDPRAT*VETAAT Trigger: GGTGGCAGCTGTCTCCACCCACGTGGCCCTTGGGTC...CATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | AAGTCACAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGCCACCCGAGCAGGCTaGAGGCCTGGTACCCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: KSQSQAPRNIGVSSPKTDATRAG*RPGTPD Trigger: ATCAGGGGTACCAGGCCTCCAGCCTGCTCGGGTGGC...ATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTGTGACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTCTTACGGTCTCTAGGAAAAGAGAGCCTACCACACGCTTGTCAGCTCAGCTCTCAGCCGGTTTaGCTCGCGGTCCAGGAAAAT | + |
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Preference number: 4 (lower is better) Translates to: SWVLRSLGKESLPHACQLSSQPV*LAVQEN Trigger: ATTTTCCTGGACCGCGAGCCAAACCGGCTGAGAGCT...GAGCTGACAAGCGTGTGGTAGGCTCTCTTTTCCTAGAGACCGTAAGACCCAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | TGTTTCGGGATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATGAGTCTGGTTGCACATGGCTaGCAAATGTGGCCCGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: CFGMSRLAVVFQFWEAMSLVAHG*QMWPGS Trigger: ACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAG...ACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATCCCGAAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | AAGTCACAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGTGAACACCCTCACTTaGGGTCCAGCTGCCCCATGC | + |
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Preference number: 4 (lower is better) Translates to: KSQSQAPRNIGVSSPKTDVNTLT*GPAAPC Trigger: GCATGGGGCAGCTGGACCCCAAGTGAGGGTGTTCAC...ATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTGTGACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR GCA 90 bp | CAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAATGGACTTGACAGAGCAATaGACGTGGGCCTTGGACTCG | + |
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Preference number: 4 (lower is better) Translates to: QSQAPRNIGVSSPKTDGMDLTEQ*TWALDS Trigger: CGAGTCCAAGGCCCACGTGCATTGCTCTGTCAAGTC...CATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | TGTTTCGGGATGTCCAGGCTGGCTGTGGTCTTTCAGTTCTGGGAGGCAATGAGTAATGCACGTGGGCCTTaGACTCGTAATACACCCAGT | + |
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Preference number: 4 (lower is better) Translates to: CFGMSRLAVVFQFWEAMSNARGP*TRNTPS Trigger: ACTGGGTGTATTACGAGTCCAAGGCCCACGTGCATT...ACTCATTGCCTCCCAGAACTGAAAGACCACAGCCAGCCTGGACATCCCGAAACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CCA 90 bp | CAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAATGCAGCACATATTGGCCTaGTTGCACATGGCTGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: QSQAPRNIGVSSPKTDGMQHILA*LHMAGK Trigger: TTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTG...CATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 90 bp | AAGAGCAGGTGGGCAGGCGTGAGCGCCAGCCGACGCGGAGGATCCTaGGTCTCGATGACCTGGAAAGCTCTCAGCCGGTTTGGCTCGCGG | + |
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Preference number: 5 (lower is better) Translates to: KSRWAGVSASRRGGS*VSMTWKALSRFGSR Trigger: CCGCGAGCCAAACCGGCTGAGAGCTTTCCAGGTCATCGAGACTCAGGATCCTCCGCGTCGGCTGGCGCTCACGCCTGCCCACCTGCTCTT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 90 bp | TTTACAGCTGACAGGGCCACACGCTCCCCGTTCTCTAGGCGCACCTaGGCTCCGGCAGGAAAGCAGCCACCTGTCTTGGCAGCGGCCGAA | + |
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Preference number: 5 (lower is better) Translates to: FTADRATRSPFSRRT*APAGKQPPVLAAAE Trigger: TTCGGCCGCTGCCAAGACAGGTGGCTGCTTTCCTGCCGGAGCCCAGGTGCGCCTAGAGAACGGGGAGCGTGTGGCCCTGTCAGCTGTAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 90 bp | CCCCATGCCAAACTGGGAAACAGTCGCAGGGGCCAGAAGGCCAACTaGGCCAGATGGTGGTCAGCCACAGCTGCAAAGCAGGAGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: PHAKLGNSRRGQKAN*ARWWSATAAKQEAT Trigger: GGTGGCCTCCTGCTTTGCAGCTGTGGCTGACCACCATCTGGCTCAGTTGGCCTTCTGGCCCCTGCGACTGTTTCCCAGTTTGGCATGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 90 bp | CCCCAGGCGGTAGAGCATCTGAGGGTACCAGTGAACACCCTCACTTaGGGTCCAGCTGCCCCATGCCAAACTGGGAAACAGTCGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: PQAVEHLRVPVNTLT*GPAAPCQTGKQSQG Trigger: CCCCTGCGACTGTTTCCCAGTTTGGCATGGGGCAGCTGGACCCCAAGTGAGGGTGTTCACTGGTACCCTCAGATGCTCTACCGCCTGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 90 bp | AGCAGGAGGCCACCACATCCTCCACCACAAGTGTCCCATGCCTTGTaGGAGGAGCATAGGACCCAAGGGCCACGTGGGTGGAGACAGCTG | + |
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Preference number: 5 (lower is better) Translates to: SRRPPHPPPQVSHAL*EEHRTQGPRGWRQL Trigger: CAGCTGTCTCCACCCACGTGGCCCTTGGGTCCTATGCTCCTCTCACAAGGCATGGGACACTTGTGGTGGAGGATGTGGTGGCCTCCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CAA 90 bp | CTCCACTCTGGCACAGAGGACGGAGACAACCTCAGGCCAGGTGCCTTCCAGGGCGCCGAATGCTCAGACTaGACAGAGCAATGCACGTGG | + |
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Preference number: 5 (lower is better) Translates to: LHSGTEDGDNLRPGAFQGAECSD*TEQCTW Trigger: CCACGTGCATTGCTCTGTCAAGTCTGAGCATTCGGC...GCCCTGGAAGGCACCTGGCCTGAGGTTGTCTCCGTCCTCTGTGCCAGAGTGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 90 bp | ACATGGCTGGCAAATGTGGCCCGGAAGTGGGCTGCTGGTTCTGTATaGTTGTCCGCAATGAAGAGCAGGTGGGCAGGCGTGAGCGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TWLANVARKWAAGSV*LSAMKSRWAGVSAS Trigger: GCTGGCGCTCACGCCTGCCCACCTGCTCTTCATTGCGGACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS GCA 90 bp | GGCTGGAGGCCTGGTACCCCTGATACCAGCACATATTGGCCTGGTTaGACATGGCTGGCAAATGTGGCCCGGAAGTGGGCTGCTGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: GWRPGTPDTSTYWPG*TWLANVARKWAAGS Trigger: AGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAGGGGTACCAGGCCTCCAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS GCA 90 bp | AGAGCATCTGAGGGTACCAGTGAACACCCTCACTTGGGGTCCAGCTaGCCCATGCCAAACTGGGAAACAGTCGCAGGGGCCAGAAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: RASEGTSEHPHLGSS*PMPNWETVAGARRP Trigger: TGGCCTTCTGGCCCCTGCGACTGTTTCCCAGTTTGGCATGGGGCAGCTGGACCCCAAGTGAGGGTGTTCACTGGTACCCTCAGATGCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 90 bp | GCCTGGTTGCACATGGCTGGCAAATGTGGCCCGGAAGTGGGCTGCTaGTTCTGTATGATTGTCCGCAATGAAGAGCAGGTGGGCAGGCGT | + |
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Preference number: 5 (lower is better) Translates to: AWLHMAGKCGPEVGC*FCMIVRNEEQVGRR Trigger: ACGCCTGCCCACCTGCTCTTCATTGCGGACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS GCA 90 bp | TTGGCCTGGTTGCACATGGCTGGCAAATGTGGCCCGGAAGTGGGCTaGTGGTTCTGTATGATTGTCCGCAATGAAGAGCAGGTGGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: LAWLHMAGKCGPEVG*WFCMIVRNEEQVGR Trigger: CCTGCCCACCTGCTCTTCATTGCGGACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 90 bp | CGGAGGATCCTGAGTCTCGATGACCTGGAAAGCTCTCAGCCGGTTTaGCTCGCGGTCCAGGAAAATAAGCACATCACTGAAGGTGGGGGT | + |
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Preference number: 5 (lower is better) Translates to: RRILSLDDLESSQPV*LAVQENKHITEGGG Trigger: ACCCCCACCTTCAGTGATGTGCTTATTTTCCTGGACCGCGAGCCAAACCGGCTGAGAGCTTTCCAGGTCATCGAGACTCAGGATCCTCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CAA 90 bp | AGCTGGGTCTTACGGTCTCTAGGAAAAGAGAGCCTACCACACGCTTGTCAGCTCGAGTTCAGACGGTCCTaGCAGCGCTGGGTCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: SWVLRSLGKESLPHACQLEFRRS*QRWVMR Trigger: CCTCATGACCCAGCGCTGCAAGGACCGTCTGAACTC...GAGCTGACAAGCGTGTGGTAGGCTCTCTTTTCCTAGAGACCGTAAGACCCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CAA 90 bp | CTCAGGAGGCTGGAGGAGTGTGGCCTGCAGGGAAGGTCATGTTTCGGGATGTCCCACATATTGGCCTGGTaGCACATGGCTGGCAAATGT | + |
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Preference number: 5 (lower is better) Translates to: LRRLEECGLQGRSCFGMSHILAW*HMAGKC Trigger: ACATTTGCCAGCCATGTGCAACCAGGCCAATATGTG...GGACATCCCGAAACATGACCTTCCCTGCAGGCCACACTCCTCCAGCCTCCTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 90 bp | CTGGTACCCCTGATACCAGCACATATTGGCCTGGTTGCACATGGCTaGCAAATGTGGCCCGGAAGTGGGCTGCTGGTTCTGTATGATTGT | + |
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Preference number: 5 (lower is better) Translates to: LVPLIPAHIGLVAHG*QMWPGSGLLVLYDC Trigger: ACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAGGGGTACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CAA 90 bp | CAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAATGTTGGGGGTGAGCTCTTaGAAGCGCTCAGAGCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: QSQAPRNIGVSSPKTDGMLGVSS*KRSELR Trigger: GCGCAGCTCTGAGCGCTTCAAAGAGCTCACCCCCAA...CATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CAA 90 bp | TCACAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAAGTGAACACCCTCACTaGGGGTCCAGCTGCCCCATG | + |
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Preference number: 5 (lower is better) Translates to: SQSQAPRNIGVSSPKTDGSEHPH*GSSCPM Trigger: CATGGGGCAGCTGGACCCCAAGTGAGGGTGTTCACT...TCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS-3UTR CAA 90 bp | CAATCCCAGGCCCCGAGAAACATTGGAGTAAGCAGTCCAAAGACAGATGGAATGAAGCTCTCAGCCGGTTaGGCTCGCGGTCCAGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: QSQAPRNIGVSSPKTDGMKLSAG*ARGPGK Trigger: TTTTCCTGGACCGCGAGCCAAACCGGCTGAGAGCTT...CATTCCATCTGTCTTTGGACTGCTTACTCCAATGTTTCTCGGGGCCTGGGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 72 bp | TGGGCAGGCGTGAGCGCCAGCCGACGCGGAGGATCCTaGGTCTCGATGACCTGGAAAGCTCTCAGCCGGTTT | + |
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Preference number: 6 (lower is better) Translates to: WAGVSASRRGGS*VSMTWKALSRF Trigger: AAACCGGCTGAGAGCTTTCCAGGTCATCGAGACTCAGGATCCTCCGCGTCGGCTGGCGCTCACGCCTGCCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CAA 90 bp | TTCTCTAGGCGCACCTGGGCTCCGGCAGGAAAGCAGCCACCTGTCTaGGCAGCGGCCGAATGCTCAGACTTGACAGAGCAATGCACGTGG | + |
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Preference number: 6 (lower is better) Translates to: FSRRTWAPAGKQPPV*AAAECSDLTEQCTW Trigger: CCACGTGCATTGCTCTGTCAAGTCTGAGCATTCGGCCGCTGCCAAGACAGGTGGCTGCTTTCCTGCCGGAGCCCAGGTGCGCCTAGAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 72 bp | AGCTGCCACCCGAGCAGGCTGGAGGCCTGGTACCCCTaGTACCAGCACATATTGGCCTGGTTGCACATGGCT | + |
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Preference number: 6 (lower is better) Translates to: SCHPSRLEAWYP*YQHILAWLHMA Trigger: AGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAGGGGTACCAGGCCTCCAGCCTGCTCGGGTGGCAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 72 bp | CCACCACATCCTCCACCACAAGTGTCCCATGCCTTGTaGGAGGAGCATAGGACCCAAGGGCCACGTGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: PPHPPPQVSHAL*EEHRTQGPRGW Trigger: CCACCCACGTGGCCCTTGGGTCCTATGCTCCTCTCACAAGGCATGGGACACTTGTGGTGGAGGATGTGGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | GGCTGGAGGCCTGGTACCCCTGATACCAGCACATATTaGCCTGGTTGCACATGGCTGGCAAATGTGGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: GWRPGTPDTSTY*PGCTWLANVAR Trigger: CCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAGGGGTACCAGGCCTCCAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS GCA 72 bp | GCAGGAAAGCAGCCACCTGTCTTGGCAGCGGCCGAATaGTCAGACTTGACAGAGCAATGCACGTGGGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: AGKQPPVLAAAE*SDLTEQCTWAL Trigger: CAAGGCCCACGTGCATTGCTCTGTCAAGTCTGAGCATTCGGCCGCTGCCAAGACAGGTGGCTGCTTTCCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 72 bp | GCAAATGTGGCCCGGAAGTGGGCTGCTGGTTCTGTATaGTTGTCCGCAATGAAGAGCAGGTGGGCAGGCGTG | + |
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Preference number: 6 (lower is better) Translates to: ANVARKWAAGSV*LSAMKSRWAGV Trigger: CACGCCTGCCCACCTGCTCTTCATTGCGGACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 72 bp | AAACTGGGAAACAGTCGCAGGGGCCAGAAGGCCAACTaGGCCAGATGGTGGTCAGCCACAGCTGCAAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: KLGNSRRGQKAN*ARWWSATAAKQ Trigger: CTGCTTTGCAGCTGTGGCTGACCACCATCTGGCTCAGTTGGCCTTCTGGCCCCTGCGACTGTTTCCCAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS GCA 72 bp | CCTGGTACCCCTGATACCAGCACATATTGGCCTGGTTaGACATGGCTGGCAAATGTGGCCCGGAAGTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: PGTPDTSTYWPG*TWLANVARKWA Trigger: AGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAGGGGTACCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | ACCCCTGATACCAGCACATATTGGCCTGGTTGCACATaGCTGGCAAATGTGGCCCGGAAGTGGGCTGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: TPDTSTYWPGCT*LANVARKWAAG Trigger: ACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS TCA 72 bp | AGCCACCTGTCTTGGCAGCGGCCGAATGCTCAGACTTaGCAGAGCAATGCACGTGGGCCTTGGACTCGTAAT | + |
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Preference number: 6 (lower is better) Translates to: SHLSWQRPNAQT*QSNARGPWTRN Trigger: ATTACGAGTCCAAGGCCCACGTGCATTGCTCTGTCAAGTCTGAGCATTCGGCCGCTGCCAAGACAGGTGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | CTGATACCAGCACATATTGGCCTGGTTGCACATGGCTaGCAAATGTGGCCCGGAAGTGGGCTGCTGGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LIPAHIGLVAHG*QMWPGSGLLVL Trigger: CAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGCTGGTATCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | GTAGAGCATCTGAGGGTACCAGTGAACACCCTCACTTaGGGTCCAGCTGCCCCATGCCAAACTGGGAAACAG | + |
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Preference number: 6 (lower is better) Translates to: VEHLRVPVNTLT*GPAAPCQTGKQ Trigger: CTGTTTCCCAGTTTGGCATGGGGCAGCTGGACCCCAAGTGAGGGTGTTCACTGGTACCCTCAGATGCTCTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CAA 72 bp | GGTAGAGCATCTGAGGGTACCAGTGAACACCCTCACTaGGGGTCCAGCTGCCCCATGCCAAACTGGGAAACA | + |
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Preference number: 6 (lower is better) Translates to: GRASEGTSEHPH*GSSCPMPNWET Trigger: TGTTTCCCAGTTTGGCATGGGGCAGCTGGACCCCAAGTGAGGGTGTTCACTGGTACCCTCAGATGCTCTACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | CACATGGCTGGCAAATGTGGCCCGGAAGTGGGCTGCTaGTTCTGTATGATTGTCCGCAATGAAGAGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: HMAGKCGPEVGC*FCMIVRNEEQV Trigger: CACCTGCTCTTCATTGCGGACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS GCA 72 bp | TTGCACATGGCTGGCAAATGTGGCCCGGAAGTGGGCTaGTGGTTCTGTATGATTGTCCGCAATGAAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LHMAGKCGPEVG*WFCMIVRNEEQ Trigger: CTGCTCTTCATTGCGGACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | GCACATATTGGCCTGGTTGCACATGGCTGGCAAATGTaGCCCGGAAGTGGGCTGCTGGTTCTGTATGATTGT | + |
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Preference number: 6 (lower is better) Translates to: AHIGLVAHGWQM*PGSGLLVLYDC Trigger: ACAATCATACAGAACCAGCAGCCCACTTCCGGGCCACATTTGCCAGCCATGTGCAACCAGGCCAATATGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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| CDS CCA 72 bp | CTGAGTCTCGATGACCTGGAAAGCTCTCAGCCGGTTTaGCTCGCGGTCCAGGAAAATAAGCACATCACTGAA | + |
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Preference number: 6 (lower is better) Translates to: LSLDDLESSQPV*LAVQENKHITE Trigger: TTCAGTGATGTGCTTATTTTCCTGGACCGCGAGCCAAACCGGCTGAGAGCTTTCCAGGTCATCGAGACTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164097.4 |
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