Pregenerated sensors for IGTP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078853Ensembl transcript IDs: ENSMUST00000035266.11, ENSMUST00000094169.11, ENSMUST00000168280.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATCATCAGCTCCAGTCTCCTGTCCATCTTGATCAAGTCCTGGAACTaGAGAGCCCTGGAGCCCATCTCCAGTCTCCCTGTACTCCGAGCT | + |
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Preference number: 1 (lower is better) Translates to: IISSSLLSILIKSWN*RALEPISSLPVLRA Trigger: AGCTCGGAGTACAGGGAGACTGGAGATGGGCTCCAGGGCTCTGCAGTTCCAGGACTTGATCAAGATGGACAGGAGACTGGAGCTGATGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR TCA 90 bp | TTTGGATACTCTGCAGTAGCTGGGGTTCAGGGAAGGTACTTGTGCTaGGGTCCCTGTCCAGCTTGGTCCAGACGACATAGAACCTCTTTC | + |
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Preference number: 1 (lower is better) Translates to: FGYSAVAGVQGRYLC*GPCPAWSRRHRTSF Trigger: GAAAGAGGTTCTATGTCGTCTGGACCAAGCTGGACAGGGACCTCAGCACAAGTACCTTCCCTGAACCCCAGCTACTGCAGAGTATCCAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR GCA 90 bp | CATCATCCACACCAAAGAGCTTCTGGTAGGTCTGGAGACCCCTCTCCAGGTTGGCTCGGAGCTGACAGCTaGCTCCAGGTCTTTCATGAG | + |
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Preference number: 2 (lower is better) Translates to: HHPHQRASGRSGDPSPGWLGADS*LQVFHE Trigger: CTCATGAAAGACCTGGAGGCAGCTGTCAGCTCCGAG...CCAACCTGGAGAGGGGTCTCCAGACCTACCAGAAGCTCTTTGGTGTGGATGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR CAA 90 bp | TCGGGAGGGAGGACAGAGTCCTTTAGAGCTTTCCTCAGGGAGGTCTaGGTGTTCTCAGCCACTATTTCAATGACGAGCTTGTGCCTCTGG | + |
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Preference number: 2 (lower is better) Translates to: SGGRTESFRAFLREV*VFSATISMTSLCLW Trigger: CCAGAGGCACAAGCTCGTCATTGAAATAGTGGCTGAGAACACCAAGACCTCCCTGAGGAAAGCTCTAAAGGACTCTGTCCTCCCTCCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAGGTTGGCAGTGTCATCCTCGGAGCTGACAGCTGCCTCCAGGTCTTTCATGTCCTCTGCATGGTTATaGCCAGCTTCACATGATTTG | + |
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Preference number: 2 (lower is better) Translates to: SRLAVSSSELTAASRSFMSSAWL*PASHDL Trigger: CAAATCATGTGAAGCTGGCCATAACCATGCAGAGGA...CATGAAAGACCTGGAGGCAGCTGTCAGCTCCGAGGATGACACTGCCAACCTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR TCA 90 bp | AGGCAGCCTGAATTCCACCTGAGGGTGAGCCAGACTCTTCTCAGTGAATTTCGGCAGCTTCACATGATTTaGGCTGAACTGCTCAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: RQPEFHLRVSQTLLSEFRQLHMI*AELLRS Trigger: GCTTCTGAGCAGTTCAGCTCAAATCATGTGAAGCTG...CCGAAATTCACTGAGAAGAGTCTGGCTCACCCTCAGGTGGAATTCAGGCTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR GCA 90 bp | GAGCCTGCTGGAGATTCTCCCGGATATTCCTTTGGATACTCTGCAGTAGCTGGGCTCTTTCTCATCCTCTaGATGGTTATGGCCAGCTTC | + |
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Preference number: 2 (lower is better) Translates to: EPAGDSPGYSFGYSAVAGLFLIL*MVMASF Trigger: GAAGCTGGCCATAACCATGCAGAGGATGAGAAAGAG...CCCAGCTACTGCAGAGTATCCAAAGGAATATCCGGGAGAATCTCCAGCAGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CCA 90 bp | TGCACTTTGAAGGAACGGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCCACACTCTGGGCTGTaGCCCCTAAGCCAGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: CTLKERAITVEYRKMGHFPHSGL*PLSQAG Trigger: ACCTGCCTGGCTTAGGGGCCACAGCCCAGAGTGTGG...GAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCCGTTCCTTCAAAGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CCA 90 bp | CATCATCCACACCAAAGAGCTTCTGGTAGGTCTGGAGACCCCTCTCCAGGTTGGTCCTCTGCATGGTTATaGCCAGCTTCACATGATTTG | + |
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Preference number: 2 (lower is better) Translates to: HHPHQRASGRSGDPSPGWSSAWL*PASHDL Trigger: CAAATCATGTGAAGCTGGCCATAACCATGCAGAGGA...CCAACCTGGAGAGGGGTCTCCAGACCTACCAGAAGCTCTTTGGTGTGGATGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CCA 90 bp | GTCTCCCTGTACTCCGAGCTACCTGCTGAAGTGACCCATCATCCACACCAAAGATCCCGGATATTCCTTTaGATACTCTGCAGTAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: VSLYSELPAEVTHHPHQRSRIFL*ILCSSW Trigger: CCAGCTACTGCAGAGTATCCAAAGGAATATCCGGGA...TCTTTGGTGTGGATGATGGGTCACTTCAGCAGGTAGCTCGGAGTACAGGGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTCCCTGTCCAGCTTGGTCCAGACGACATAGAACCTCTTTCTCATCCTCTGATCCTGGCAAATACTTaGACTTTGAAGGAACGGGCT | + |
|
Preference number: 2 (lower is better) Translates to: EVPVQLGPDDIEPLSHPLILANT*TLKERA Trigger: AGCCCGTTCCTTCAAAGTGCAAGTATTTGCCAGGAT...CAGAGGATGAGAAAGAGGTTCTATGTCGTCTGGACCAAGCTGGACAGGGACCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGCCACACTCTGGGCTGTaGCCCCTAAGCCAGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: GLLQLNIGRWAISSKIIKPHSGL*PLSQAG Trigger: ACCTGCCTGGCTTAGGGGCCACAGCCCAGAGTGTGG...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR GCA 90 bp | GGATCTCTGTACCTGATGCTGAAGATGTCTTTTTGCAGTGTGTTTCTAAGCTCTATCCTGGCAAATACTTaGACTTTGAAGGAACGGGCT | + |
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Preference number: 2 (lower is better) Translates to: GSLYLMLKMSFCSVFLSSILANT*TLKERA Trigger: AGCCCGTTCCTTCAAAGTGCAAGTATTTGCCAGGAT...AGAGCTTAGAAACACACTGCAAAAAGACATCTTCAGCATCAGGTACAGAGATCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGATCTTGATCAAGTCCTaGAACTGCAGAGCCCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: GLLQLNIGRWAISSKIIKILIKS*NCRALE Trigger: CTCCAGGGCTCTGCAGTTCCAGGACTTGATCAAGAT...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR TCA 72 bp | TCTGCAGTAGCTGGGGTTCAGGGAAGGTACTTGTGCTaGGGTCCCTGTCCAGCTTGGTCCAGACGACATAGA | + |
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Preference number: 3 (lower is better) Translates to: SAVAGVQGRYLC*GPCPAWSRRHR Trigger: TCTATGTCGTCTGGACCAAGCTGGACAGGGACCTCAGCACAAGTACCTTCCCTGAACCCCAGCTACTGCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR GCA 72 bp | TCCAGTCTCCTGTCCATCTTGATCAAGTCCTGGAACTaGAGAGCCCTGGAGCCCATCTCCAGTCTCCCTGTA | + |
|
Preference number: 3 (lower is better) Translates to: SSLLSILIKSWN*RALEPISSLPV Trigger: TACAGGGAGACTGGAGATGGGCTCCAGGGCTCTGCAGTTCCAGGACTTGATCAAGATGGACAGGAGACTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR CCA 72 bp | ATCAGCTCCAGTCTCCTGTCCATCTTGATCAAGTCCTaGAACTGCAGAGCCCTGGAGCCCATCTCCAGTCTC | + |
|
Preference number: 3 (lower is better) Translates to: ISSSLLSILIKS*NCRALEPISSL Trigger: GAGACTGGAGATGGGCTCCAGGGCTCTGCAGTTCCAGGACTTGATCAAGATGGACAGGAGACTGGAGCTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR GCA 72 bp | CTCCAGGTTGGCAGTGTCATCCTCGGAGCTGACAGCTaGCTCCAGGTCTTTCATGAGCATCTGATCTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: LQVGSVILGADS*LQVFHEHLIFL Trigger: AAGGAAGATCAGATGCTCATGAAAGACCTGGAGGCAGCTGTCAGCTCCGAGGATGACACTGCCAACCTGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR CCA 72 bp | TTCTCCCGGATATTCCTTTGGATACTCTGCAGTAGCTaGGGTTCAGGGAAGGTACTTGTGCTGAGGTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: FSRIFLWILCSS*GSGKVLVLRSL Trigger: CAGGGACCTCAGCACAAGTACCTTCCCTGAACCCCAGCTACTGCAGAGTATCCAAAGGAATATCCGGGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CAA 90 bp | TCCAGGTTGGCAGTGTCATCCTCGGAGCTGACAGCTGCCTCCAGGTCTTTCATGAACGGGCTATTACAGTaGAATATAGGAAGATGGGCC | + |
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Preference number: 3 (lower is better) Translates to: SRLAVSSSELTAASRSFMNGLLQ*NIGRWA Trigger: GGCCCATCTTCCTATATTCAACTGTAATAGCCCGTT...CATGAAAGACCTGGAGGCAGCTGTCAGCTCCGAGGATGACACTGCCAACCTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR GCA 72 bp | TGCTGGAGATTCTCCCGGATATTCCTTTGGATACTCTaGAGTAGCTGGGGTTCAGGGAAGGTACTTGTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: CWRFSRIFLWIL*SSWGSGKVLVL Trigger: CAGCACAAGTACCTTCCCTGAACCCCAGCTACTGCAGAGTATCCAAAGGAATATCCGGGAGAATCTCCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGTCCCTGTCCAGCTTGGTCCAGACGACATAGAACCTCTTTCTCATCCTCTGCATCATTACAAGCTGTaGCCTCAGCTGTTGTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: EVPVQLGPDDIEPLSHPLHHYKL*PQLLFL Trigger: AAGGAACAACAGCTGAGGCAACAGCTTGTAATGATG...CAGAGGATGAGAAAGAGGTTCTATGTCGTCTGGACCAAGCTGGACAGGGACCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR TCA 72 bp | GAGCTGACAGCTGCCTCCAGGTCTTTCATGAGCATCTaGTCTTCCTTCAGAGAGAACGCCTTATTGCTGATG | + |
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Preference number: 3 (lower is better) Translates to: ELTAASRSFMSI*SSFRENALLLM Trigger: CATCAGCAATAAGGCGTTCTCTCTGAAGGAAGATCAGATGCTCATGAAAGACCTGGAGGCAGCTGTCAGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR TCA 72 bp | CATCCTCTGCATGGTTATGGCCAGCTTCACATGATTTaGGCTGAACTGCTCAGAAGCTACGATGATGATAAG | + |
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Preference number: 3 (lower is better) Translates to: HPLHGYGQLHMI*AELLRSYDDDK Trigger: CTTATCATCATCGTAGCTTCTGAGCAGTTCAGCTCAAATCATGTGAAGCTGGCCATAACCATGCAGAGGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR TCA 72 bp | TTTCTCATCCTCTGCATGGTTATGGCCAGCTTCACATaGTTTGAGCTGAACTGCTCAGAAGCTACGATGATG | + |
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Preference number: 3 (lower is better) Translates to: FLILCMVMASFT*FELNCSEATMM Trigger: CATCATCGTAGCTTCTGAGCAGTTCAGCTCAAATCATGTGAAGCTGGCCATAACCATGCAGAGGATGAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGAGCTGAACTGCTCAGAAGCTACGATGATGATAAGGTCAAATGTGCTGATCCATCATTACAAGCTGTaGCCTCAGCTGTTGTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: FELNCSEATMMIRSNVLIHHYKL*PQLLFL Trigger: AAGGAACAACAGCTGAGGCAACAGCTTGTAATGATG...GATCAGCACATTTGACCTTATCATCATCGTAGCTTCTGAGCAGTTCAGCTCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| 3UTR TCA 72 bp | TCTTTTTGCAGTGTGTTTCTAAGCTCTGGGAAGTCGTaGAAAGACGGGCTAAAACAGGATATCAGGAATAGG | + |
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Preference number: 3 (lower is better) Translates to: SFCSVFLSSGKS*KDGLKQDIRNR Trigger: CCTATTCCTGATATCCTGTTTTAGCCCGTCTTTTCACGACTTCCCAGAGCTTAGAAACACACTGCAAAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| CDS-3UTR CCA 90 bp | GCTAGGGCTCTAAGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGGACCCCTCTCCAGGTTaGCAGTGTCATCCTCGGAGC | + |
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Preference number: 4 (lower is better) Translates to: ARALSKKTLRQPEFHLRVDPSPG*QCHPRS Trigger: GCTCCGAGGATGACACTGCCAACCTGGAGAGGGGTC...CACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCTTAGAGCCCTAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR TCA 90 bp | GCTAGGGCTCTAAGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGAGCTACCTGCTGAAGTaGCCCATCATCCACACCAAA | + |
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Preference number: 4 (lower is better) Translates to: ARALSKKTLRQPEFHLRVSYLLK*PIIHTK Trigger: TTTGGTGTGGATGATGGGTCACTTCAGCAGGTAGCT...CACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCTTAGAGCCCTAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR TCA 90 bp | GCTAGGGCTCTAAGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGGGCATTGATGAAAGATaGCATGCCATTGCCAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: ARALSKKTLRQPEFHLRVGIDER*HAIARV Trigger: GACTCTGGCAATGGCATGTCATCTTTCATCAATGCC...CACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCTTAGAGCCCTAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR TCA 90 bp | GCTAGGGCTCTAAGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGCAGCTTCACATGATTTaGGCTGAACTGCTCAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: ARALSKKTLRQPEFHLRVQLHMI*AELLRS Trigger: GCTTCTGAGCAGTTCAGCTCAAATCATGTGAAGCTG...CACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCTTAGAGCCCTAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR GCA 90 bp | AGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGAGCCAGACTCTTTTCCTTTGGATACTCTaGAGTAGCTGGGGTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: SKKTLRQPEFHLRVSQTLFLWIL*SSWGSG Trigger: CCCTGAACCCCAGCTACTGCAGAGTATCCAAAGGAA...AAGAGTCTGGCTCACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CCA 90 bp | AGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGAGCCAGACTCTTATCTTGATCAAGTCCTaGAACTGCAGAGCCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SKKTLRQPEFHLRVSQTLILIKS*NCRALE Trigger: CTCCAGGGCTCTGCAGTTCCAGGACTTGATCAAGAT...AAGAGTCTGGCTCACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CCA 90 bp | AGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGAGCCAGACTCTTTCCTCAGGGAGGTCTTaGTGTTCTCAGCCACTATTT | + |
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Preference number: 4 (lower is better) Translates to: SKKTLRQPEFHLRVSQTLSSGRS*CSQPLF Trigger: AAATAGTGGCTGAGAACACCAAGACCTCCCTGAGGA...AAGAGTCTGGCTCACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR TCA 90 bp | GTCTCCCTGTACTCCGAGCTACCTGCTGAAGTGACCCATCATCCACACCAAAGACCTCCTCATGTCCAATaGACCAGCAGTCATAGATTT | + |
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Preference number: 4 (lower is better) Translates to: VSLYSELPAEVTHHPHQRPPHVQ*TSSHRF Trigger: AAATCTATGACTGCTGGTTCATTGGACATGAGGAGG...TCTTTGGTGTGGATGATGGGTCACTTCAGCAGGTAGCTCGGAGTACAGGGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094169.11 |
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| 3UTR CAA 72 bp | AGGACAGAGTCCTTTAGAGCTTTCCTCAGGGAGGTCTaGGTGTTCTCAGCCACTATTTCAATGACGAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RTESFRAFLREV*VFSATISMTSL Trigger: CAAGCTCGTCATTGAAATAGTGGCTGAGAACACCAAGACCTCCCTGAGGAAAGCTCTAAAGGACTCTGTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| CDS-3UTR GCA 90 bp | TGCACTTTGAAGGAACGGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCGGAGCTGACAGCTaGCTCCAGGTCTTTCATGAG | + |
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Preference number: 4 (lower is better) Translates to: CTLKERAITVEYRKMGHFLGADS*LQVFHE Trigger: CTCATGAAAGACCTGGAGGCAGCTGTCAGCTCCGAG...GAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCCGTTCCTTCAAAGTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CCA 90 bp | AAATTATTAAGCATCATTACAAGCTGTTGCCTCAGCTGTTGTTCCTTTCTAGTGGGAACTGCAGAGCCCTaGAGCCCATCTCCAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: KLLSIITSCCLSCCSFLVGTAEP*SPSPVS Trigger: GGAGACTGGAGATGGGCTCCAGGGCTCTGCAGTTCC...CACTAGAAAGGAACAACAGCTGAGGCAACAGCTTGTAATGATGCTTAATAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR GCA 90 bp | AGCAAAAAGACCCTGAGGCAGCCTGAATTCCACCTGAGGGTGAGCCAGACTCTTGCGCTTGAGATAATTTaGCATGTTTATGAAAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: SKKTLRQPEFHLRVSQTLALEII*HVYEKC Trigger: ACACTTTTCATAAACATGGCAAATTATCTCAAGCGC...AAGAGTCTGGCTCACCCTCAGGTGGAATTCAGGCTGCCTCAGGGTCTTTTTGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000035266.11 ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| CDS-3UTR GCA 90 bp | TGCACTTTGAAGGAACGGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCAAGATGACATGCCATTaGCAGAGTCCCCAGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: CTLKERAITVEYRKMGHFKMTCH*QSPQSQ Trigger: CTGTGACTGGGGACTCTGGCAATGGCATGTCATCTT...GAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCCGTTCCTTCAAAGTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR TCA 90 bp | TGCACTTTGAAGGAACGGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTGGCTGGAATAAAGTaGCTCACCAGCAGTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: CTLKERAITVEYRKMGHFLAGIK*LTSSHR Trigger: TCTATGACTGCTGGTGAGTCACTTTATTCCAGCCAG...GAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCCGTTCCTTCAAAGTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035266.11 ENSMUST00000168280.2 |
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| CDS-3UTR TCA 90 bp | TTTGAGCTGAACTGCTCAGAAGCTACGATGATGATAAGGTCAAATGTGCTGATCAACCAATATCTTCAATaGCTTCTGGAGAGGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: FELNCSEATMMIRSNVLINQYLQ*LLERMS Trigger: ACTCATCCTCTCCAGAAGTCATTGAAGATATTGGTT...GATCAGCACATTTGACCTTATCATCATCGTAGCTTCTGAGCAGTTCAGCTCAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168280.2 |
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| CDS-3UTR CCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGAGAGGAGTAGCAGGCTaGTTTCTTAGTGGTCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKRGVAG*FLSGPH Trigger: GTGAGGACCACTAAGAAACCAGCCTGCTACTCCTCT...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR TCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGCTGGCTGGAATAAAGTaGCTCACCAGCAGTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKLAGIK*LTSSHR Trigger: TCTATGACTGCTGGTGAGTCACTTTATTCCAGCCAG...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035266.11 ENSMUST00000168280.2 |
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| CDS-3UTR TCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGCCTCCAGGTCTTTCATaGGCATCTGATCTTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKPPGLS*ASDLPS Trigger: TGAAGGAAGATCAGATGCTCATGAAAGACCTGGAGG...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR GCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGCTCTTTCTCATCCTCTaGATGGTTATGGCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKLFLIL*MVMASF Trigger: GAAGCTGGCCATAACCATGCAGAGGATGAGAAAGAG...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CCA 90 bp | AAATTATTAAGCATCATTACAAGCTGTTGCCTCAGCTGTTGTTCCTTTCTAGTGAGGATGAGTTCTGGCTaGAATAAAGTGACTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: KLLSIITSCCLSCCSFLVRMSSG*NKVTHQ Trigger: CTGGTGAGTCACTTTATTCCAGCCAGAACTCATCCT...CACTAGAAAGGAACAACAGCTGAGGCAACAGCTTGTAATGATGCTTAATAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035266.11 ENSMUST00000168280.2 |
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| CDS-3UTR CCA 90 bp | AAATTATTAAGCATCATTACAAGCTGTTGCCTCAGCTGTTGTTCCTTTCTAGTGTCCTCTGCATGGTTATaGCCAGCTTCACATGATTTG | + |
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Preference number: 4 (lower is better) Translates to: KLLSIITSCCLSCCSFLVSSAWL*PASHDL Trigger: CAAATCATGTGAAGCTGGCCATAACCATGCAGAGGA...CACTAGAAAGGAACAACAGCTGAGGCAACAGCTTGTAATGATGCTTAATAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGAGGATGAGTTCTGGCTaGAATAAAGTGACTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKRMSSG*NKVTHQ Trigger: CTGGTGAGTCACTTTATTCCAGCCAGAACTCATCCT...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035266.11 ENSMUST00000168280.2 |
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| CDS-3UTR TCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGTCTTTCATGAGCATCTaGTCTTCCTTCAGAGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKSFMSI*SSFREN Trigger: GTTCTCTCTGAAGGAAGATCAGATGCTCATGAAAGA...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR GCA 90 bp | AAATTATTAAGCATCATTACAAGCTGTTGCCTCAGCTGTTGTTCCTTTCTAGTGGCGCTTGAGATAATTTaGCATGTTTATGAAAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: KLLSIITSCCLSCCSFLVALEII*HVYEKC Trigger: ACACTTTTCATAAACATGGCAAATTATCTCAAGCGC...CACTAGAAAGGAACAACAGCTGAGGCAACAGCTTGTAATGATGCTTAATAATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035266.11 ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| CDS-3UTR GCA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGGCGCTTGAGATAATTTaGCATGTTTATGAAAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: GLLQLNIGRWAISSKIIKALEII*HVYEKC Trigger: ACACTTTTCATAAACATGGCAAATTATCTCAAGCGC...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035266.11 ENSMUST00000094169.11 ENSMUST00000168280.2 |
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| CDS TCA 90 bp | ATCCTCCTCCTCATGTCCAATGAACCTAAGGGCATTGATGAAAGATaGCATGCCATTGCCAGAGTCCCCAGTCACAGCAATCTTTACTCT | + |
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Preference number: 5 (lower is better) Translates to: ILLLMSNEPKGIDER*HAIARVPSHSNLYS Trigger: AGAGTAAAGATTGCTGTGACTGGGGACTCTGGCAATGGCATGTCATCTTTCATCAATGCCCTTAGGTTCATTGGACATGAGGAGGAGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS TCA 90 bp | GGAGCTGAATCCTCCTCCTCATGTCCAATGAACCAATATCTTCAATaGCTTCTGGAGAGGATGAGTTCTGGCTGGAATAAAGTGACTCAC | + |
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Preference number: 5 (lower is better) Translates to: GAESSSSCPMNQYLQ*LLERMSSGWNKVTH Trigger: GTGAGTCACTTTATTCCAGCCAGAACTCATCCTCTCCAGAAGTCATTGAAGATATTGGTTCATTGGACATGAGGAGGAGGATTCAGCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168280.2 |
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| CDS-3UTR CAA 90 bp | TGCACTTTGAAGGAACGGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCGCTGAAGATGTCTTTTaGCAGTGTGTTTCTAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: CTLKERAITVEYRKMGHFAEDVF*QCVSKL Trigger: GAGCTTAGAAACACACTGCAAAAAGACATCTTCAGC...GAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCCGTTCCTTCAAAGTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CAA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGAAAGATGACATGCCATaGCCAGAGTCCCCAGTCACA | + |
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Preference number: 5 (lower is better) Translates to: GLLQLNIGRWAISSKIIKKDDMP*PESPVT Trigger: TGTGACTGGGGACTCTGGCAATGGCATGTCATCTTT...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CAA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGTTCCTCAGGGAGGTCTaGGTGTTCTCAGCCACTATT | + |
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Preference number: 5 (lower is better) Translates to: GLLQLNIGRWAISSKIIKFLREV*VFSATI Trigger: AATAGTGGCTGAGAACACCAAGACCTCCCTGAGGAA...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS TCA 90 bp | GAGTCCCCAGTCACAGCAATCTTTACTCTGTATCTTGACTTACTCTaGATTTCATCTTTGACTATACCTATCACTTTCTGTAAATTTCCC | + |
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Preference number: 5 (lower is better) Translates to: ESPVTAIFTLYLDLL*ISSLTIPITFCKFP Trigger: GGGAAATTTACAGAAAGTGATAGGTATAGTCAAAGATGAAATTCAGAGTAAGTCAAGATACAGAGTAAAGATTGCTGTGACTGGGGACTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS-3UTR CAA 90 bp | GGGCTATTACAGTTGAATATAGGAAGATGGGCCATTTCCTCTAAAATTATTAAGATGAACCTAAGGGCATaGATGAAAGATGACATGCCA | + |
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Preference number: 5 (lower is better) Translates to: GLLQLNIGRWAISSKIIKMNLRA*MKDDMP Trigger: TGGCATGTCATCTTTCATCAATGCCCTTAGGTTCAT...CTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS CCA 72 bp | CACATAGGGAAAGTGGGAGTCAGAGGAGTAGCAGGCTaGTTTCTTAGTGGTCCTCACCACCCCAGTGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: HIGKVGVRGVAG*FLSGPHHPSGS Trigger: GCTCCCACTGGGGTGGTGAGGACCACTAAGAAACCAGCCTGCTACTCCTCTGACTCCCACTTTCCCTATGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS TCA 72 bp | CCCCAGTGGGAGCTGAATCCTCCTCCTCATGTCCAATaGACCAGCAGTCATAGATTTAGACCACGGGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: PQWELNPPPHVQ*TSSHRFRPRAD Trigger: ATCAGCCCGTGGTCTAAATCTATGACTGCTGGTTCATTGGACATGAGGAGGAGGATTCAGCTCCCACTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094169.11 |
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| CDS CAA 90 bp | GTGGGAGCTGAATCCTCCTCCTCATGTCCAATGAACCTAAGGGCATaGATGAAAGATGACATGCCATTGCCAGAGTCCCCAGTCACAGCA | + |
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Preference number: 6 (lower is better) Translates to: VGAESSSSCPMNLRA*MKDDMPLPESPVTA Trigger: TGCTGTGACTGGGGACTCTGGCAATGGCATGTCATCTTTCATCAATGCCCTTAGGTTCATTGGACATGAGGAGGAGGATTCAGCTCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS TCA 72 bp | CTCATGTCCAATGAACCTAAGGGCATTGATGAAAGATaGCATGCCATTGCCAGAGTCCCCAGTCACAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: LMSNEPKGIDER*HAIARVPSHSN Trigger: ATTGCTGTGACTGGGGACTCTGGCAATGGCATGTCATCTTTCATCAATGCCCTTAGGTTCATTGGACATGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS TCA 72 bp | AATTTCCCTCTGTCACCGCCTTACCAATATCTTCAATaGCTTCTGGAGAGGATGAGTTCTGGCTGGAATAAA | + |
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Preference number: 6 (lower is better) Translates to: NFPLSPPYQYLQ*LLERMSSGWNK Trigger: TTTATTCCAGCCAGAACTCATCCTCTCCAGAAGTCATTGAAGATATTGGTAAGGCGGTGACAGAGGGAAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035266.11 |
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| CDS TCA 72 bp | TCCTCCTCCTCATGTCCAATGAACCAATATCTTCAATaGCTTCTGGAGAGGATGAGTTCTGGCTGGAATAAA | + |
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Preference number: 6 (lower is better) Translates to: SSSSCPMNQYLQ*LLERMSSGWNK Trigger: TTTATTCCAGCCAGAACTCATCCTCTCCAGAAGTCATTGAAGATATTGGTTCATTGGACATGAGGAGGAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168280.2 |
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