RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IGSF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042035

Ensembl transcript IDs: ENSMUST00000043983.11, ENSMUST00000195164.2

Found 224 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGCCAGGAAGGATTGTCAGGCTGCATCTTGCCTCCTGCCCTCTCTaGTCAGCACACGGCCCACACCTAGCAGACTCCTCGGAAGGATCC +
Preference number: 1 (lower is better)
Translates to: GPGRIVRLHLASCPL*SAHGPHLADSSEGS
Trigger: GGATCCTTCCGAGGAGTCTGCTAGGTGTGGGCCGTGTGCTGAGCAGAGAGGGCAGGAGGCAAGATGCAGCCTGACAATCCTTCCTGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 90 bp AGAGTTCAGGTGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATaGGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGG +
Preference number: 1 (lower is better)
Translates to: RVQVLSPVQSQSTKQ*GKAQRAPLTRPCHG
Trigger: CCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCACCTGAACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
3UTR GCA 90 bp TTCTCAGAGAACAAGAGGGCCAGGAAGGATTGTCAGGCTGCATCTTaGCTCCTGCCCTCTCTGCTCAGCACACGGCCCACACCTAGCAGA +
Preference number: 1 (lower is better)
Translates to: FSENKRARKDCQAAS*LLPSLLSTRPTPSR
Trigger: TCTGCTAGGTGTGGGCCGTGTGCTGAGCAGAGAGGGCAGGAGGCAAGATGCAGCCTGACAATCCTTCCTGGCCCTCTTGTTCTCTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 90 bp AAGGGCTGTGCCTGGTCCTATCCGAGGACAATATCTCCATGGCACTaGGATTCGGGAAGAGCTGCGATGGATAAGGATGCCCTCACCGTC +
Preference number: 1 (lower is better)
Translates to: KGCAWSYPRTISPWH*DSGRAAMDKDALTV
Trigger: GACGGTGAGGGCATCCTTATCCATCGCAGCTCTTCCCGAATCTCAGTGCCATGGAGATATTGTCCTCGGATAGGACCAGGCACAGCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 90 bp ACCTCGACCGGAAGCTTCCAACAAGTTCCAGGTCTGACTGGCTCCTaGAGAGAAACTGCAGAGTTCAGGTGCTGTCGCCTGTCCAATCAC +
Preference number: 1 (lower is better)
Translates to: TSTGSFQQVPGLTGS*RETAEFRCCRLSNH
Trigger: GTGATTGGACAGGCGACAGCACCTGAACTCTGCAGTTTCTCTGCAGGAGCCAGTCAGACCTGGAACTTGTTGGAAGCTTCCGGTCGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp AATGATGGGACTGAGCCTTTTTGCCTCCCTGACGGACTGGTTGGCTaGCCACCATCTGCTCCTAATAGGGTCCTGCAGGGTTTCTTCTGC +
Preference number: 1 (lower is better)
Translates to: NDGTEPFCLPDGLVG*PPSAPNRVLQGFFC
Trigger: GCAGAAGAAACCCTGCAGGACCCTATTAGGAGCAGATGGTGGCCAGCCAACCAGTCCGTCAGGGAGGCAAAAAGGCTCAGTCCCATCATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp GCAGCAAAAATGAGAATCAGCAGGGCAGGCACAGGAGGATTAAGGTaGCGCTGCCTGGACACTTCTCAGAGAACAAGAGGGCCAGGAAGG +
Preference number: 1 (lower is better)
Translates to: AAKMRISRAGTGGLR*RCLDTSQRTRGPGR
Trigger: CCTTCCTGGCCCTCTTGTTCTCTGAGAAGTGTCCAGGCAGCGCCACCTTAATCCTCCTGTGCCTGCCCTGCTGATTCTCATTTTTGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp TTTTTGGCAATGATGGGACTGAGCCTTTTTGCCTCCCTGACGGACTaGTTGGCTGGCCACCATCTGCTCCTAATAGGGTCCTGCAGGGTT +
Preference number: 1 (lower is better)
Translates to: FLAMMGLSLFASLTD*LAGHHLLLIGSCRV
Trigger: AACCCTGCAGGACCCTATTAGGAGCAGATGGTGGCCAGCCAACCAGTCCGTCAGGGAGGCAAAAAGGCTCAGTCCCATCATTGCCAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp CGAGGACAATATCTCCATGGCACTGAGATTCGGGAAGAGCTGCGATaGATAAGGATGCCCTCACCGTCTCCGAGGAAAGGCTCACTGGAA +
Preference number: 1 (lower is better)
Translates to: RGQYLHGTEIREELR*IRMPSPSPRKGSLE
Trigger: TTCCAGTGAGCCTTTCCTCGGAGACGGTGAGGGCATCCTTATCCATCGCAGCTCTTCCCGAATCTCAGTGCCATGGAGATATTGTCCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 90 bp CTCCACTCAGGGCAGCCCCTTCAGGCTTCACTAGACATGTCCCCTTaGAAATTTGGCAAAGCACCTACAGAAGAAAGCTACCTGCCCAGG +
Preference number: 1 (lower is better)
Translates to: LHSGQPLQASLDMSP*KFGKAPTEESYLPR
Trigger: CCTGGGCAGGTAGCTTTCTTCTGTAGGTGCTTTGCCAAATTTTCAAGGGGACATGTCTAGTGAAGCCTGAAGGGGCTGCCCTGAGTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 90 bp AAAATGAGAATCAGCAGGGCAGGCACAGGAGGATTAAGGTGGCGCTaGCTGGACACTTCTCAGAGAACAAGAGGGCCAGGAAGGATTGTC +
Preference number: 1 (lower is better)
Translates to: KMRISRAGTGGLRWR*LDTSQRTRGPGRIV
Trigger: GACAATCCTTCCTGGCCCTCTTGTTCTCTGAGAAGTGTCCAGGCAGCGCCACCTTAATCCTCCTGTGCCTGCCCTGCTGATTCTCATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp GCTCCTGTTCTGAGTTGTCTGCTGAAAGCAGGGGGACAACAAGAATaGCAAAGGGCTGTGCCTGGTCCTATCCGAGGACAATATCTCCAT +
Preference number: 1 (lower is better)
Translates to: APVLSCLLKAGGQQE*QRAVPGPIRGQYLH
Trigger: ATGGAGATATTGTCCTCGGATAGGACCAGGCACAGCCCTTTGCCATTCTTGTTGTCCCCCTGCTTTCAGCAGACAACTCAGAACAGGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 90 bp TACATTACACAGCACAGGAAACCCCATAGCACCGATCTGAGAACATaGGTTAGATTGGCGAGTAGATGCGGCACCTGGAGCTACGCACTA +
Preference number: 1 (lower is better)
Translates to: YITQHRKPHSTDLRT*VRLASRCGTWSYAL
Trigger: TAGTGCGTAGCTCCAGGTGCCGCATCTACTCGCCAATCTAACTCATGTTCTCAGATCGGTGCTATGGGGTTTCCTGTGCTGTGTAATGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp CTACAGAAACACACCGATGAGAGAGGGTGTGGTCATATAGTGTCCTaGGACAGGCCTAGCACAGTGGAGATGCTCATAAATGTGACACTG +
Preference number: 1 (lower is better)
Translates to: LQKHTDERGCGHIVS*DRPSTVEMLINVTL
Trigger: CAGTGTCACATTTATGAGCATCTCCACTGTGCTAGGCCTGTCCCAGGACACTATATGACCACACCCTCTCTCATCGGTGTGTTTCTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp ACAAGGCTTTGCAGAAATCACTCCTTAAATTTACTTCCACAATCCTaGGTACCTTTTGCCAAGGGGCTCTCTCTTGGGACTCAGGATGCA +
Preference number: 1 (lower is better)
Translates to: TRLCRNHSLNLLPQS*VPFAKGLSLGTQDA
Trigger: TGCATCCTGAGTCCCAAGAGAGAGCCCCTTGGCAAAAGGTACCCAGGATTGTGGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 90 bp AACAAAAGACATTCTTTCTTCGTGACTGAGCCAATTTGGTCCCTCTaGTGTGTTCGTGCAGCAAAAATGAGAATCAGCAGGGCAGGCACA +
Preference number: 1 (lower is better)
Translates to: NKRHSFFVTEPIWSL*CVRAAKMRISRAGT
Trigger: TGTGCCTGCCCTGCTGATTCTCATTTTTGCTGCACGAACACATCAGAGGGACCAAATTGGCTCAGTCACGAAGAAAGAATGTCTTTTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 90 bp ATAGGGTCCTGCAGGGTTTCTTCTGCACATGTGCAGTCAGTCCTTTaGAGCGAAATTCAATGCTTTCATCTTGACTATAAAGTGGTTCCA +
Preference number: 1 (lower is better)
Translates to: IGSCRVSSAHVQSVL*SEIQCFHLDYKVVP
Trigger: TGGAACCACTTTATAGTCAAGATGAAAGCATTGAATTTCGCTTCAAAGGACTGACTGCACATGTGCAGAAGAAACCCTGCAGGACCCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 90 bp GTCCTGCAGCCTTTGTGTTGTCTGTTTATTCTCAGGACAAGGCTTTaGAGAAATCACTCCTTAAATTTACTTCCACAATCCTGGGTACCT +
Preference number: 1 (lower is better)
Translates to: VLQPLCCLFILRTRL*RNHSLNLLPQSWVP
Trigger: AGGTACCCAGGATTGTGGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGACAACACAAAGGCTGCAGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 90 bp ATGTCTTGGAAGAGAATCCTTGTTACTATGAAGGCGTCTTCCTCTTaGTTATCAGTTGTGAGAGAAACTCTTCCACAACATTATGGGATC +
Preference number: 1 (lower is better)
Translates to: MSWKRILVTMKASSS*LSVVRETLPQHYGI
Trigger: GATCCCATAATGTTGTGGAAGAGTTTCTCTCACAACTGATAAGCAAGAGGAAGACGCCTTCATAGTAACAAGGATTCTCTTCCAAGACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 90 bp CAGTCCTTTGAAGCGAAATTCAATGCTTTCATCTTGACTATAAAGTaGTTCCAACAACTCCGGCTGAAGGAAGAGATAAGATACAAATTG +
Preference number: 1 (lower is better)
Translates to: QSFEAKFNAFILTIK*FQQLRLKEEIRYKL
Trigger: CAATTTGTATCTTATCTCTTCCTTCAGCCGGAGTTGTTGGAACCACTTTATAGTCAAGATGAAAGCATTGAATTTCGCTTCAAAGGACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp GTAGCAGCTCAGCACACTCCACTGGGCCTGTGCACAGGGGCCACTTaGGCCATAATGCTCCCTCCACTCAGGGCAGCCCCTTCAGGCTTC +
Preference number: 2 (lower is better)
Translates to: VAAQHTPLGLCTGAT*AIMLPPLRAAPSGF
Trigger: GAAGCCTGAAGGGGCTGCCCTGAGTGGAGGGAGCATTATGGCCAAAGTGGCCCCTGTGCACAGGCCCAGTGGAGTGTGCTGAGCTGCTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR GCA 90 bp CCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGGCCATGGGCAACGTCTaGTGGGAGTGGGCAGCCTCT +
Preference number: 2 (lower is better)
Translates to: PITEHEAMRKSPEGSPDPAMGNV*WEWAAS
Trigger: AGAGGCTGCCCACTCCCAGCAGACGTTGCCCATGGC...CGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
3UTR CAA 90 bp TTGGCAATGATGGGACTGAGCCTTTTTGCCTCCCTGACGGACTGGTaGGCTGGCCACCATCTGCTCCTAATAGGGTCCTGCAGGGTTTCT +
Preference number: 2 (lower is better)
Translates to: LAMMGLSLFASLTDW*AGHHLLLIGSCRVS
Trigger: AGAAACCCTGCAGGACCCTATTAGGAGCAGATGGTGGCCAGCCAACCAGTCCGTCAGGGAGGCAAAAAGGCTCAGTCCCATCATTGCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CCA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGCTCAGCACACTCCACTaGGCCTGTGCACAGGGGCCA +
Preference number: 2 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVELSTLH*ACAQGP
Trigger: TGGCCCCTGTGCACAGGCCCAGTGGAGTGTGCTGAG...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR TCA 90 bp TACTTCCACAATCCTGGGTACCTTTTGCCAAGGGGCTCTCTCTTGGGACTCAGGATATCTCCATGGCACTaGGATTCGGGAAGAGCTGCG +
Preference number: 2 (lower is better)
Translates to: YFHNPGYLLPRGSLLGLRISPWH*DSGRAA
Trigger: CGCAGCTCTTCCCGAATCTCAGTGCCATGGAGATAT...CCTGAGTCCCAAGAGAGAGCCCCTTGGCAAAAGGTACCCAGGATTGTGGAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp GACAAAAGCCTCAACAGACAATATGCAGTGAAGCCTTCTAGCCACTaGAGGGCGCCATCACCATTTATCCGACAACACATGTCCATAGAC +
Preference number: 2 (lower is better)
Translates to: DKSLNRQYAVKPSSH*RAPSPFIRQHMSID
Trigger: GTCTATGGACATGTGTTGTCGGATAAATGGTGATGGCGCCCTCAAGTGGCTAGAAGGCTTCACTGCATATTGTCTGTTGAGGCTTTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR TCA 90 bp TCAGTTGTGAGAGAAACTCTTCCACAACATTATGGGATCCAAAAGGAGAGGACCAGGATGTTGGCATCATaGCACCTGGGTGTGATCAGC +
Preference number: 2 (lower is better)
Translates to: SVVRETLPQHYGIQKERTRMLAS*HLGVIS
Trigger: GCTGATCACACCCAGGTGTCATGATGCCAACATCCT...GGTCCTCTCCTTTTGGATCCCATAATGTTGTGGAAGAGTTTCTCTCACAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR GCA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGTTTCTTCTGCACATGTaGAGTCAGTCCTTTGAAGCG +
Preference number: 2 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVEFLLHM*SQSFEA
Trigger: CGCTTCAAAGGACTGACTGCACATGTGCAGAAGAAA...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CCA 90 bp CACACCCATGAATCGAAGGAACAGAACAAAAGACATTCTTTCTTCGTGACTGAGAGTTCCAGGTCTGACTaGCTCCTGCAGAGAAACTGC +
Preference number: 2 (lower is better)
Translates to: HTHESKEQNKRHSFFVTESSRSD*LLQRNC
Trigger: GCAGTTTCTCTGCAGGAGCCAGTCAGACCTGGAACT...CTCAGTCACGAAGAAAGAATGTCTTTTGTTCTGTTCCTTCGATTCATGGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CCA 90 bp CACACCCATGAATCGAAGGAACAGAACAAAAGACATTCTTTCTTCGTGACTGAGGGGCAGCTAAGCATCTaGCTTAACAGAGTGGAGGCA +
Preference number: 2 (lower is better)
Translates to: HTHESKEQNKRHSFFVTEGQLSI*LNRVEA
Trigger: TGCCTCCACTCTGTTAAGCCAGATGCTTAGCTGCCC...CTCAGTCACGAAGAAAGAATGTCTTTTGTTCTGTTCCTTCGATTCATGGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp GCTCATAAATGTGACACTGGAGAGGACAGATGTCAGGAGTCTCTCTaGAGTACTCTGATCTCGGAGGACAAAAGCCTCAACAGACAATAT +
Preference number: 2 (lower is better)
Translates to: AHKCDTGEDRCQESL*STLISEDKSLNRQY
Trigger: ATATTGTCTGTTGAGGCTTTTGTCCTCCGAGATCAGAGTACTCAAGAGAGACTCCTGACATCTGTCCTCTCCAGTGTCACATTTATGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR TCA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGTGTTTGGGTATATTTTaGTCCACGGGTGGCATTTTC +
Preference number: 2 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVECLGIF*STGGIF
Trigger: GAAAATGCCACCCGTGGATCAAAATATACCCAAACA...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CCA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGTCTTCCACAACATTATaGGATCCAAAAGGAGAGGAC +
Preference number: 2 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVESSTTL*DPKGED
Trigger: GTCCTCTCCTTTTGGATCCCATAATGTTGTGGAAGA...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp CAACATGAACGCAGAGACACCATTGTTGGAAACAAATATGAAGACTaGCTACAGAAACACACCGATGAGAGAGGGTGTGGTCATATAGTG +
Preference number: 2 (lower is better)
Translates to: QHERRDTIVGNKYED*LQKHTDERGCGHIV
Trigger: CACTATATGACCACACCCTCTCTCATCGGTGTGTTTCTGTAGCAAGTCTTCATATTTGTTTCCAACAATGGTGTCTCTGCGTTCATGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CCA 90 bp TCTGTTTATTCTCAGGACAAGGCTTTGCAGAAATCACTCCTTAAATTTACTTCCGCAAAGGGCTGTGCCTaGTCCTATCCGAGGACAATA +
Preference number: 2 (lower is better)
Translates to: SVYSQDKALQKSLLKFTSAKGCA*SYPRTI
Trigger: TATTGTCCTCGGATAGGACCAGGCACAGCCCTTTGC...GGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp CACATGTGCAGTCAGTCCTTTGAAGCGAAATTCAATGCTTTCATCTaGACTATAAAGTGGTTCCAACAACTCCGGCTGAAGGAAGAGATA +
Preference number: 2 (lower is better)
Translates to: HMCSQSFEAKFNAFI*TIKWFQQLRLKEEI
Trigger: TATCTCTTCCTTCAGCCGGAGTTGTTGGAACCACTTTATAGTCAAGATGAAAGCATTGAATTTCGCTTCAAAGGACTGACTGCACATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CCA 90 bp TACCCCATCTCTGTCTTCAACATGAACGCAGAGACACCATTGTTGGAAACAAATATCTTGACTATAAAGTaGTTCCAACAACTCCGGCTG +
Preference number: 2 (lower is better)
Translates to: YPISVFNMNAETPLLETNILTIK*FQQLRL
Trigger: CAGCCGGAGTTGTTGGAACCACTTTATAGTCAAGAT...ATTTGTTTCCAACAATGGTGTCTCTGCGTTCATGTTGAAGACAGAGATGGGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp AAGTGGTTCCAACAACTCCGGCTGAAGGAAGAGATAAGATACAAATaGGGCCCACGCTACACATATTTTTCAAGTCTTGCTAAGAAAGTA +
Preference number: 2 (lower is better)
Translates to: KWFQQLRLKEEIRYK*GPRYTYFSSLAKKV
Trigger: TACTTTCTTAGCAAGACTTGAAAAATATGTGTAGCGTGGGCCCAATTTGTATCTTATCTCTTCCTTCAGCCGGAGTTGTTGGAACCACTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 90 bp AATGTCTTGGAAGAGAATCCTTGTTACTATGAAGGCGTCTTCCTCTaGCTTATCAGTTGTGAGAGAAACTCTTCCACAACATTATGGGAT +
Preference number: 2 (lower is better)
Translates to: NVLEENPCYYEGVFL*LISCERNSSTTLWD
Trigger: ATCCCATAATGTTGTGGAAGAGTTTCTCTCACAACTGATAAGCAAGAGGAAGACGCCTTCATAGTAACAAGGATTCTCTTCCAAGACATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 72 bp GGGCCAGGAAGGATTGTCAGGCTGCATCTTGCCTCCTaGCCTCTCTGCTCAGCACACGGCCCACACCTAGCA +
Preference number: 3 (lower is better)
Translates to: GPGRIVRLHLAS*PLCSAHGPHLA
Trigger: TGCTAGGTGTGGGCCGTGTGCTGAGCAGAGAGGGCAGGAGGCAAGATGCAGCCTGACAATCCTTCCTGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp GTGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATaGGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCC +
Preference number: 3 (lower is better)
Translates to: VLSPVQSQSTKQ*GKAQRAPLTRP
Trigger: GGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
3UTR GCA 72 bp AACAAGAGGGCCAGGAAGGATTGTCAGGCTGCATCTTaGCTCCTGCCCTCTCTGCTCAGCACACGGCCCACA +
Preference number: 3 (lower is better)
Translates to: NKRARKDCQAAS*LLPSLLSTRPT
Trigger: TGTGGGCCGTGTGCTGAGCAGAGAGGGCAGGAGGCAAGATGCAGCCTGACAATCCTTCCTGGCCCTCTTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp ACTGAGCCTTTTTGCCTCCCTGACGGACTGGTTGGCTaGCCACCATCTGCTCCTAATAGGGTCCTGCAGGGT +
Preference number: 3 (lower is better)
Translates to: TEPFCLPDGLVG*PPSAPNRVLQG
Trigger: ACCCTGCAGGACCCTATTAGGAGCAGATGGTGGCCAGCCAACCAGTCCGTCAGGGAGGCAAAAAGGCTCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp ATGATGGGACTGAGCCTTTTTGCCTCCCTGACGGACTaGTTGGCTGGCCACCATCTGCTCCTAATAGGGTCC +
Preference number: 3 (lower is better)
Translates to: MMGLSLFASLTD*LAGHHLLLIGS
Trigger: GGACCCTATTAGGAGCAGATGGTGGCCAGCCAACCAGTCCGTCAGGGAGGCAAAAAGGCTCAGTCCCATCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp CTCGACCGGAAGCTTCCAACAAGTTCCAGGTCTGACTaGCTCCTGCAGAGAAACTGCAGAGTTCAGGTGCTG +
Preference number: 3 (lower is better)
Translates to: LDRKLPTSSRSD*LLQRNCRVQVL
Trigger: CAGCACCTGAACTCTGCAGTTTCTCTGCAGGAGCCAGTCAGACCTGGAACTTGTTGGAAGCTTCCGGTCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp TATCTCCATGGCACTGAGATTCGGGAAGAGCTGCGATaGATAAGGATGCCCTCACCGTCTCCGAGGAAAGGC +
Preference number: 3 (lower is better)
Translates to: YLHGTEIREELR*IRMPSPSPRKG
Trigger: GCCTTTCCTCGGAGACGGTGAGGGCATCCTTATCCATCGCAGCTCTTCCCGAATCTCAGTGCCATGGAGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp ATGAGAATCAGCAGGGCAGGCACAGGAGGATTAAGGTaGCGCTGCCTGGACACTTCTCAGAGAACAAGAGGG +
Preference number: 3 (lower is better)
Translates to: MRISRAGTGGLR*RCLDTSQRTRG
Trigger: CCCTCTTGTTCTCTGAGAAGTGTCCAGGCAGCGCCACCTTAATCCTCCTGTGCCTGCCCTGCTGATTCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CAA 90 bp CGTGTAAAACTTGAATCTGGTACATCAGTGCCAAGAGCAAAACTCCAGGCCACCTGCCGCCTGGAGCCCTaGACCCTTCCTTCAGGTTGG +
Preference number: 3 (lower is better)
Translates to: RVKLESGTSVPRAKLQATCRLEP*TLPSGW
Trigger: CCAACCTGAAGGAAGGGTCAAGGGCTCCAGGCGGCA...GGTGGCCTGGAGTTTTGCTCTTGGCACTGATGTACCAGATTCAAGTTTTACACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp CAGCACAGGAAACCCCATAGCACCGATCTGAGAACATaGGTTAGATTGGCGAGTAGATGCGGCACCTGGAGC +
Preference number: 3 (lower is better)
Translates to: QHRKPHSTDLRT*VRLASRCGTWS
Trigger: GCTCCAGGTGCCGCATCTACTCGCCAATCTAACTCATGTTCTCAGATCGGTGCTATGGGGTTTCCTGTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp GCCTGGTCCTATCCGAGGACAATATCTCCATGGCACTaGGATTCGGGAAGAGCTGCGATGGATAAGGATGCC +
Preference number: 3 (lower is better)
Translates to: AWSYPRTISPWH*DSGRAAMDKDA
Trigger: GGCATCCTTATCCATCGCAGCTCTTCCCGAATCTCAGTGCCATGGAGATATTGTCCTCGGATAGGACCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp CTGAGTTGTCTGCTGAAAGCAGGGGGACAACAAGAATaGCAAAGGGCTGTGCCTGGTCCTATCCGAGGACAA +
Preference number: 3 (lower is better)
Translates to: LSCLLKAGGQQE*QRAVPGPIRGQ
Trigger: TTGTCCTCGGATAGGACCAGGCACAGCCCTTTGCCATTCTTGTTGTCCCCCTGCTTTCAGCAGACAACTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp GGCAACCCTCAGAAACTGGGTGCCGCCTGGAGCCCTTaGCCCTTCCTTCAGGTTGGCTCGTTTATTATTATT +
Preference number: 3 (lower is better)
Translates to: GNPQKLGAAWSP*PFLQVGSFIII
Trigger: AATAATAATAAACGAGCCAACCTGAAGGAAGGGTCAAGGGCTCCAGGCGGCACCCAGTTTCTGAGGGTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp CACACCGATGAGAGAGGGTGTGGTCATATAGTGTCCTaGGACAGGCCTAGCACAGTGGAGATGCTCATAAAT +
Preference number: 3 (lower is better)
Translates to: HTDERGCGHIVS*DRPSTVEMLIN
Trigger: ATTTATGAGCATCTCCACTGTGCTAGGCCTGTCCCAGGACACTATATGACCACACCCTCTCTCATCGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp GGGCAGCCCCTTCAGGCTTCACTAGACATGTCCCCTTaGAAATTTGGCAAAGCACCTACAGAAGAAAGCTAC +
Preference number: 3 (lower is better)
Translates to: GQPLQASLDMSP*KFGKAPTEESY
Trigger: GTAGCTTTCTTCTGTAGGTGCTTTGCCAAATTTTCAAGGGGACATGTCTAGTGAAGCCTGAAGGGGCTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CAA 90 bp CACACCCATGAATCGAAGGAACAGAACAAAAGACATTCTTTCTTCGTGACTGAGAGCTCCTGTTCTGAGTaGTCTGCTGAAAGCAGGGGG +
Preference number: 3 (lower is better)
Translates to: HTHESKEQNKRHSFFVTESSCSE*SAESRG
Trigger: CCCCCTGCTTTCAGCAGACAACTCAGAACAGGAGCT...CTCAGTCACGAAGAAAGAATGTCTTTTGTTCTGTTCCTTCGATTCATGGGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CAA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGACTAGACATGTCCCCTaGAAAATTTGGCAAAGCACC +
Preference number: 3 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVETRHVP*KIWQST
Trigger: GGTGCTTTGCCAAATTTTCAAGGGGACATGTCTAGT...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR-3UTR CAA 90 bp CACACCCATGAATCGAAGGAACAGAACAAAAGACATTCTTTCTTCGTGACTGAGAATCCTGGGTACCTTTaGCCAAGGGGCTCTCTCTTG +
Preference number: 3 (lower is better)
Translates to: HTHESKEQNKRHSFFVTENPGYL*PRGSLL
Trigger: CAAGAGAGAGCCCCTTGGCAAAAGGTACCCAGGATT...CTCAGTCACGAAGAAAGAATGTCTTTTGTTCTGTTCCTTCGATTCATGGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 72 bp GAAAATTTGGCAAAGCACCTACAGAAGAAAGCTACCTaGCCAGGGGTAAGTCAAGAGACCAAGCTTGCCAAA +
Preference number: 3 (lower is better)
Translates to: ENLAKHLQKKAT*PGVSQETKLAK
Trigger: TTTGGCAAGCTTGGTCTCTTGACTTACCCCTGGGCAGGTAGCTTTCTTCTGTAGGTGCTTTGCCAAATTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 72 bp CTCCTTAAATTTACTTCCACAATCCTGGGTACCTTTTaGCAAGGGGCTCTCTCTTGGGACTCAGGATGCAAA +
Preference number: 3 (lower is better)
Translates to: LLKFTSTILGTF*QGALSWDSGCK
Trigger: TTTGCATCCTGAGTCCCAAGAGAGAGCCCCTTGGCAAAAGGTACCCAGGATTGTGGAAGTAAATTTAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTaGCTTAACAGAGTGGAGGCAGTGGAGTTCAGATTT +
Preference number: 3 (lower is better)
Translates to: FTIDEAPGQLSI*LNRVEAVEFRF
Trigger: AAATCTGAACTCCACTGCCTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp CATTCTTTCTTCGTGACTGAGCCAATTTGGTCCCTCTaGTGTGTTCGTGCAGCAAAAATGAGAATCAGCAGG +
Preference number: 3 (lower is better)
Translates to: HSFFVTEPIWSL*CVRAAKMRISR
Trigger: CCTGCTGATTCTCATTTTTGCTGCACGAACACATCAGAGGGACCAAATTGGCTCAGTCACGAAGAAAGAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp GAAGGAACAGAACAAAAGACATTCTTTCTTCGTGACTaGGCCAATTTGGTCCCTCTGATGTGTTCGTGCAGC +
Preference number: 3 (lower is better)
Translates to: EGTEQKTFFLRD*ANLVPLMCSCS
Trigger: GCTGCACGAACACATCAGAGGGACCAAATTGGCTCAGTCACGAAGAAAGAATGTCTTTTGTTCTGTTCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR TCA 72 bp CTTGCAAACGTCCTGCGGTTGCTTTGCATATTTACTTaGGTCTTCTGCTGCTACAGAGCTGATCTGAAATCT +
Preference number: 3 (lower is better)
Translates to: LANVLRLLCIFT*VFCCYRADLKS
Trigger: AGATTTCAGATCAGCTCTGTAGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR GCA 72 bp AAGAGAATCCTTGTTACTATGAAGGCGTCTTCCTCTTaGTTATCAGTTGTGAGAGAAACTCTTCCACAACAT +
Preference number: 3 (lower is better)
Translates to: KRILVTMKASSS*LSVVRETLPQH
Trigger: ATGTTGTGGAAGAGTTTCTCTCACAACTGATAAGCAAGAGGAAGACGCCTTCATAGTAACAAGGATTCTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CCA 72 bp GAAGCGAAATTCAATGCTTTCATCTTGACTATAAAGTaGTTCCAACAACTCCGGCTGAAGGAAGAGATAAGA +
Preference number: 3 (lower is better)
Translates to: EAKFNAFILTIK*FQQLRLKEEIR
Trigger: TCTTATCTCTTCCTTCAGCCGGAGTTGTTGGAACCACTTTATAGTCAAGATGAAAGCATTGAATTTCGCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp AAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGCTCCCGGGTGGATGCTaGGCACCGGAGGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: KSPEGSPDPTLPWATSAGLPGGC*APEAPG
Trigger: GCCTGGAGCCTCCGGTGCTCAGCATCCACCCGGGAG...CCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGACCACTGTGTCCACCTaGAGGGCAGCGTCGGGTCGC +
Preference number: 4 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGTTVST*RAASGR
Trigger: GCGACCCGACGCTGCCCTCCAGGTGGACACAGTGGT...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp CAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCACCACTGTGTCCACCTaGAGGGCAGCGTCGGGTCGC +
Preference number: 4 (lower is better)
Translates to: QRAPLTRPCHGQRLLGVGTTVST*RAASGR
Trigger: GCGACCCGACGCTGCCCTCCAGGTGGACACAGTGGT...GCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp CAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCCCGCCACATTCTGGATaGAGAGCCTGTACACGCCGG +
Preference number: 4 (lower is better)
Translates to: QRAPLTRPCHGQRLLGVGPPHSG*RACTRR
Trigger: CCGGCGTGTACAGGCTCTTCATCCAGAATGTGGCGG...GCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGACACACCACTGGGGCTaGGCAGCCACTCCTCTACTC +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQTHHWG*AATPLL
Trigger: GAGTAGAGGAGTGGCTGCCCAGCCCCAGTGGTGTGT...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGTCGGTGTTGGGGGTGTaGCATTCATACTCGCCGGCA +
Preference number: 4 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGSVLGV*HSYSPA
Trigger: TGCCGGCGAGTATGAATGTCACACCCCCAACACCGA...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGCCCTGGTCGGAAGGCTaGAGGTGGAAGATGGTGAGA +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQPWSEG*RWKMVR
Trigger: TCTCACCATCTTCCACCTGCAGCCTTCCGACCAGGG...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGAGGCGGCTGTCTGGCTaGTTCACAGTGACCTCTGTG +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQRRLSG*FTVTSV
Trigger: CACAGAGGTCACTGTGAAGCAGCCAGACAGCCGCCT...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCTGCCCTCCCAAGGACTaGCTTCGGGACCAAAGACAG +
Preference number: 4 (lower is better)
Translates to: QRAPLTRPCHGQRLLGVGCPPKD*LRDQRQ
Trigger: CTGTCTTTGGTCCCGAAGGCAGTCCTTGGGAGGGCA...GCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGCCTCCACGGAGATGCTaGTTTCCAAGTGGCCTTGGG +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQPPRRC*FPSGLG
Trigger: CCCAAGGCCACTTGGAAAGCAGCATCTCCGTGGAGG...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp AAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAAGAGGTGAGAGCCTCTaGAAGCGCAGCCTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: KAQRAPLTRPCHGQRLLGRGESL*KRSLPS
Trigger: GGAGGGCAGGCTGCGCTTCCAGAGGCTCTCACCTCT...TCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCCTTGGGGCAGGATCTaGTGCTGCTGGGGGACTTTA +
Preference number: 4 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGPWGRI*CCWGTL
Trigger: TAAAGTCCCCCAGCAGCACCAGATCCTGCCCCAAGG...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp AAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGTGTCACTGGCCCGGCTaGTGCTCAGGCGGACATTGT +
Preference number: 4 (lower is better)
Translates to: KSPEGSPDPTLPWATSAGCHWPG*CSGGHC
Trigger: ACAATGTCCGCCTGAGCATCAGCCGGGCCAGTGACA...CCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp CAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCTGGAGTTCCGGCTTTTaGAGCGCACCAGCAGAATGG +
Preference number: 4 (lower is better)
Translates to: QRAPLTRPCHGQRLLGVGWSSGF*SAPAEW
Trigger: CCATTCTGCTGGTGCGCTTCAAAAGCCGGAACTCCA...GCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGGGCTCACCCACCGTGTaGAGCCTCTTATCTGTTTCC +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQGSPTV*SLLSVS
Trigger: GGAAACAGATAAGAGGCTGCACACGGTGGGTGAGCC...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGTGCCTCCATAGCTGCTaGGCTCCCAGTACGCTGAGC +
Preference number: 4 (lower is better)
Translates to: KSPEGSPDPTLPWATSAGCLHSC*APSTLS
Trigger: GCTCAGCGTACTGGGAGCGCAGCAGCTATGGAGGCA...CCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTCACAGCACGGCGAAGTaGGAGTTCGGGCTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: RKSPEGSPDPTLPWATSAHSTAK*EFGLVW
Trigger: CCAGACCAGCCCGAACTCGCACTTCGCCGTGCTGTG...AGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGCACTCCAGCTGTATCTaGCGGGTCTCCAGAACAGAC +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQHSSCI*RVSRTD
Trigger: GTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTG...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGATCTGGAAGCGCAGCCTaGCCTCCCAAGGACTGCCTT +
Preference number: 4 (lower is better)
Translates to: KAQRAPLTRPCHGQRLLGSGSAA*PPKDCL
Trigger: AAGGCAGTCCTTGGGAGGGCAGGCTGCGCTTCCAGA...TCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGGGCAGGATCTGGTGCTaGTGGGGGACTTTAACTACC +
Preference number: 4 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGGRIWC*WGTLTT
Trigger: GGTAGTTAAAGTCCCCCAGCAGCACCAGATCCTGCC...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCTGGGGCAGGATCTGGTaGTGCTGGGGGACTTTAACT +
Preference number: 4 (lower is better)
Translates to: QRAPLTRPCHGQRLLGVGWGRIW*CWGTLT
Trigger: AGTTAAAGTCCCCCAGCAGCACCAGATCCTGCCCCA...GCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGACTGTGCCCACTGGCTaGAACCTCCATGTCACAGAC +
Preference number: 4 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGTVPTG*NLHVTD
Trigger: GTCTGTGACATGGAGGTTCCAGCCAGTGGGCACAGT...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
3UTR CAA 72 bp CAGCACACTCCACTGGGCCTGTGCACAGGGGCCACTTaGGCCATAATGCTCCCTCCACTCAGGGCAGCCCCT +
Preference number: 4 (lower is better)
Translates to: QHTPLGLCTGAT*AIMLPPLRAAP
Trigger: AGGGGCTGCCCTGAGTGGAGGGAGCATTATGGCCAAAGTGGCCCCTGTGCACAGGCCCAGTGGAGTGTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp AAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGATCGGTGTTGGGGGTGTaGCATTCATACTCGCCGGCA +
Preference number: 4 (lower is better)
Translates to: KAQRAPLTRPCHGQRLLGSVLGV*HSYSPA
Trigger: TGCCGGCGAGTATGAATGTCACACCCCCAACACCGA...TCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp AAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGACGGTACCATTCCTTCTaGGGGCTTGGTAGCCACTCC +
Preference number: 4 (lower is better)
Translates to: KAQRAPLTRPCHGQRLLGRYHSF*GLGSHS
Trigger: GGAGTGGCTACCAAGCCCTCAGAAGGAATGGTACCG...TCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGGAAGTAAGGCTGAGTTaGCCTGGATCCTCTCCACGT +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQEVRLS*PGSSPR
Trigger: ACGTGGAGAGGATCCAGGGCAACTCAGCCTTACTTC...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGACCACTGTGCGGACAGTaGAGGAGAAGTGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: KAQRAPLTRPCHGQRLLGPLCGQ*RRSAGP
Trigger: AGGACCTGCACTTCTCCTGCACTGTCCGCACAGTGG...TCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGAGCGGGCCTGCAGCCTaGCCACTGTGCGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: PITEHEAMRKSPEGSPDPSGPAA*PLCGQC
Trigger: GCACTGTCCGCACAGTGGGCAGGCTGCAGGCCCGCT...CGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCGGTACAGCAGAGGTaGGAGCCTCTGGAAGCGCAG +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLPVQQR*EPLEAQ
Trigger: CTGCGCTTCCAGAGGCTCTCACCTCTGCTGTACCGG...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCACCGAGAAGCGGGCCTaGAGCCTGCCCACTGTGCGG +
Preference number: 4 (lower is better)
Translates to: AVACPITEHEAMRKSPEGTEKRA*SLPTVR
Trigger: CCGCACAGTGGGCAGGCTGCAGGCCCGCTTCTCGGT...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp GAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGCAGACTTCTCGCTCTGGGTaGTTGGGCTTCCATACAAAC +
Preference number: 4 (lower is better)
Translates to: EGSPDPTLPWATSAGSGQTSRSG*LGFHTN
Trigger: GTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGT...CTGCCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGTCAGGTGAGGCTCCTTaGTCCACAACAGGGGCACCC +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLSGEAP*STTGAP
Trigger: GGGTGCCCCTGTTGTGGATCAAGGAGCCTCACCTGA...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGTATTCGCTGCTGGAGTaGAGGATGAAGTCTCGGCTC +
Preference number: 4 (lower is better)
Translates to: KSPEGSPDPTLPWATSAGYSLLE*RMKSRL
Trigger: GAGCCGAGACTTCATCCTGCACTCCAGCAGCGAATA...CCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGTCAGAGTCTTCTTCTTaGGATATGTCCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGSESSS*DMSSSS
Trigger: GGAGGAGGAGGACATATCGCAAGAAGAAGACTCTGA...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCAGGCTCCCCTGGACTTaGCTGAGCTTCAGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTRLPWT*LSFRRL
Trigger: CAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCT...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp AGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTCACCACTTCTCGCTCTaGGTGGTTGGGCTTCCATAC +
Preference number: 4 (lower is better)
Translates to: RKSPEGSPDPTLPWATSAHHFSL*VVGLPY
Trigger: GTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTG...AGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp CCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGTCAGGTGAGGCTCCTTaGTCCACAACAGGGGCACCC +
Preference number: 4 (lower is better)
Translates to: PITEHEAMRKSPEGSPDPSGEAP*STTGAP
Trigger: GGGTGCCCCTGTTGTGGATCAAGGAGCCTCACCTGA...CGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGAAGTAAGGCTGAGTTaGCCTGGATCCTCTCCACGT +
Preference number: 4 (lower is better)
Translates to: RKSPEGSPDPTLPWATSAEVRLS*PGSSPR
Trigger: ACGTGGAGAGGATCCAGGGCAACTCAGCCTTACTTC...AGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCACTGTGCGGACAGTaGAGGAGAAGTGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLPLCGQ*RRSAGP
Trigger: AGGACCTGCACTTCTCCTGCACTGTCCGCACAGTGG...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AGGGGGACAACAAGAATGGCAAAGGGCTGTGCCTGGTCCTATCCGAGGACAATAAGCGGGCCTGCAGCCTaGCCACTGTGCGGACAGTGC +
Preference number: 4 (lower is better)
Translates to: RGTTRMAKGCAWSYPRTISGPAA*PLCGQC
Trigger: GCACTGTCCGCACAGTGGGCAGGCTGCAGGCCCGCT...TATTGTCCTCGGATAGGACCAGGCACAGCCCTTTGCCATTCTTGTTGTCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp CAGAAGAAAGCTACCTGCCCAGGGGTAAGTCAAGAGACCAAGCTTGCCAAAGCCACCGAGAAGCGGGCCTaGAGCCTGCCCACTGTGCGG +
Preference number: 4 (lower is better)
Translates to: QKKATCPGVSQETKLAKATEKRA*SLPTVR
Trigger: CCGCACAGTGGGCAGGCTGCAGGCCCGCTTCTCGGT...GGCTTTGGCAAGCTTGGTCTCTTGACTTACCCCTGGGCAGGTAGCTTTCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCGCGAGGCCACGCTGGTaGGGTTCAGGACCACACACT +
Preference number: 4 (lower is better)
Translates to: VACPITEHEAMRKSPEGSARPRW*GSGPHT
Trigger: AGTGTGTGGTCCTGAACCGCACCAGCGTGGCCTCGC...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp AGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTCTCGCTCTGGGTGGTTaGGCTTCCATACAAACCACT +
Preference number: 4 (lower is better)
Translates to: RKSPEGSPDPTLPWATSALALGG*ASIQTT
Trigger: AGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAG...AGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp AAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAACTTCTCGCTCTGGGTaGTTGGGCTTCCATACAAAC +
Preference number: 4 (lower is better)
Translates to: KAQRAPLTRPCHGQRLLGTSRSG*LGFHTN
Trigger: GTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGT...TCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGTATACCACACACCACTaGGGCTGGGCAGCCACTCCT +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLYTTHH*GWAATP
Trigger: AGGAGTGGCTGCCCAGCCCCAGTGGTGTGTGGTATA...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp CGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCGAACCCGGATGCCAATaGGGGCAGACTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: RLSNHRARSNEEKPRGLPEPGCQ*GQTPPL
Trigger: CAGAGGAGGAGTCTGCCCCCATTGGCATCCGGGTTC...GGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCCCCTCCATCTCGTGTaGAGGTCACCAGGTCATGGA +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTPLHLV*RSPGHG
Trigger: TCCATGACCTGGTGACCTTCACACGAGATGGAGGGG...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp CCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGCCCCTCCATCTCGTGTaGAGGTCACCAGGTCATGGA +
Preference number: 4 (lower is better)
Translates to: PITEHEAMRKSPEGSPDPPLHLV*RSPGHG
Trigger: TCCATGACCTGGTGACCTTCACACGAGATGGAGGGG...CGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCGAGCCATCTGGATCCTaGATCCACTCCGCAGCCTCG +
Preference number: 4 (lower is better)
Translates to: VACPITEHEAMRKSPEGSEPSGS*IHSAAS
Trigger: CGAGGCTGCGGAGTGGATCCAGGATCCAGATGGCTC...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp AACCATCACCTCGACCGGAAGCTTCCAACAAGTTCCAGGTCTGACTGGCTCCTGAGAGGTGAGAGCCTCTaGAAGCGCAGCCTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: NHHLDRKLPTSSRSDWLLRGESL*KRSLPS
Trigger: GGAGGGCAGGCTGCGCTTCCAGAGGCTCTCACCTCT...CAGGAGCCAGTCAGACCTGGAACTTGTTGGAAGCTTCCGGTCGAGGTGATGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp CGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCGCAGGTGGAAGATGGTaGGACGAAAGGTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RLSNHRARSNEEKPRGLPAGGRW*DERCFS
Trigger: GGAGAAGCACCTTTCGTCTCACCATCTTCCACCTGC...GGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCCCCGTTCTTCCCCTCTaGGTTCTTGCTGGAGTTCCG +
Preference number: 4 (lower is better)
Translates to: AVACPITEHEAMRKSPEGPVLPL*VLAGVP
Trigger: CGGAACTCCAGCAAGAACTCAGAGGGGAAGAACGGG...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGCTCCCGGGTGGATGCTaGGCACCGGAGGCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVELPGGC*APEAPG
Trigger: GCCTGGAGCCTCCGGTGCTCAGCATCCACCCGGGAG...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGTATTCGCTGCTGGAGTaGAGGATGAAGTCTCGGCTC +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLYSLLE*RMKSRL
Trigger: GAGCCGAGACTTCATCCTGCACTCCAGCAGCGAATA...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCGGCTCACCCACCGTGTaGAGCCTCTTATCTGTTTCC +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTGSPTV*SLLSVS
Trigger: GGAAACAGATAAGAGGCTGCACACGGTGGGTGAGCC...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp TGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCGCAGCCTGCCCACTGTaGGGACAGTGCAGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: CRLSNHRARSNEEKPRGLAACPL*GQCRRS
Trigger: ACTTCTCCTGCACTGTCCGCACAGTGGGCAGGCTGC...GAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp TGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCTGCCTCCATAGCTGCTaGGCTCCCAGTACGCTGAGC +
Preference number: 4 (lower is better)
Translates to: CRLSNHRARSNEEKPRGLCLHSC*APSTLS
Trigger: GCTCAGCGTACTGGGAGCGCAGCAGCTATGGAGGCA...GAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGTCGAAGGCCGAGCTGTaGGTGGTTTTGAGGATGAGC +
Preference number: 4 (lower is better)
Translates to: PITEHEAMRKSPEGSPDPSKAEL*VVLRMS
Trigger: GCTCATCCTCAAAACCACGCACAGCTCGGCCTTCGA...CGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCTCCACTGTGCCCACTaGCTGGAACCTCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: VACPITEHEAMRKSPEGSLHCAH*LEPPCH
Trigger: GTGACATGGAGGTTCCAGCCAGTGGGCACAGTGGAG...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCTTCTCAGTTACGGTaGCATTGGGGACCACTGTGT +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLPSQLR*HWGPLC
Trigger: ACACAGTGGTCCCCAATGCCACCGTAACTGAGAAGG...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp CCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGATGCTGCTTTCCAAGTaGCCTTGGGGCAGGATCTGG +
Preference number: 4 (lower is better)
Translates to: PITEHEAMRKSPEGSPDPMLLSK*PWGRIW
Trigger: CCAGATCCTGCCCCAAGGCCACTTGGAAAGCAGCAT...CGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCTGCAGGTCTGTGATGTaGAGTAAGGCTGAGTTGCCC +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTCRSVM*SKAELP
Trigger: GGGCAACTCAGCCTTACTTCACATCACAGACCTGCA...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp AGGGGGACAACAAGAATGGCAAAGGGCTGTGCCTGGTCCTATCCGAGGACAATACCGCCACATTCTGGATaGAGAGCCTGTACACGCCGG +
Preference number: 4 (lower is better)
Translates to: RGTTRMAKGCAWSYPRTIPPHSG*RACTRR
Trigger: CCGGCGTGTACAGGCTCTTCATCCAGAATGTGGCGG...TATTGTCCTCGGATAGGACCAGGCACAGCCCTTTGCCATTCTTGTTGTCCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp TGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCCCGTTCTTCCCCTCTaGGTTCTTGCTGGAGTTCCG +
Preference number: 4 (lower is better)
Translates to: CCRLSNHRARSNEEKPRGPVLPL*VLAGVP
Trigger: CGGAACTCCAGCAAGAACTCAGAGGGGAAGAACGGG...CCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp AACCATCACCTCGACCGGAAGCTTCCAACAAGTTCCAGGTCTGACTGGCTCCTGAGGCGGCTGTCTGGCTaGTTCACAGTGACCTCTGTG +
Preference number: 4 (lower is better)
Translates to: NHHLDRKLPTSSRSDWLLRRLSG*FTVTSV
Trigger: CACAGAGGTCACTGTGAAGCAGCCAGACAGCCGCCT...CAGGAGCCAGTCAGACCTGGAACTTGTTGGAAGCTTCCGGTCGAGGTGATGGTT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCCCTCCTGCTCGTCAATaGCAAGGCTGCCTCTTTTCC +
Preference number: 4 (lower is better)
Translates to: AVACPITEHEAMRKSPEGPPARQ*QGCLFS
Trigger: GGAAAAGAGGCAGCCTTGGCATTGACGAGCAGGAGG...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAAAGGCTCACTGGAAGGAAGACAGAGGGAAGCACTCCTCCAACCTCTCAACCATCTGGAAGCGCAGCCTaGCCTCCCAAGGACTGCCTT +
Preference number: 4 (lower is better)
Translates to: ERLTGRKTEGSTPPTSQPSGSAA*PPKDCL
Trigger: AAGGCAGTCCTTGGGAGGGCAGGCTGCGCTTCCAGA...TGGTTGAGAGGTTGGAGGAGTGCTTCCCTCTGTCTTCCTTCCAGTGAGCCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCACCTCCACGGAGATaGTGCTTTCCAAGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: VACPITEHEAMRKSPEGSPPPRR*CFPSGL
Trigger: AAGGCCACTTGGAAAGCAGCATCTCCGTGGAGGTGG...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCTCGGAAGGCTGCAGGTaGAAGATGGTGAGACGAAAG +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTSEGCR*KMVRRK
Trigger: CTTTCGTCTCACCATCTTCCACCTGCAGCCTTCCGA...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCACTGTGCCCACTGGCTaGAACCTCCATGTCACAGAC +
Preference number: 4 (lower is better)
Translates to: VACPITEHEAMRKSPEGSTVPTG*NLHVTD
Trigger: GTCTGTGACATGGAGGTTCCAGCCAGTGGGCACAGT...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCAAGGTCACCAGGTCATaGAACTCCACTGTGCCCACT +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTKVTRS*NSTVPT
Trigger: AGTGGGCACAGTGGAGTTCCATGACCTGGTGACCTT...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp ATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCCTTCTCAGTTACGGTaGCATTGGGGACCACTGTGT +
Preference number: 4 (lower is better)
Translates to: ITEHEAMRKSPEGSPDPTPSQLR*HWGPLC
Trigger: ACACAGTGGTCCCCAATGCCACCGTAACTGAGAAGG...GGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp TACTTCCACAATCCTGGGTACCTTTTGCCAAGGGGCTCTCTCTTGGGACTCAGGGAACCCGGATGCCAATaGGGGCAGACTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: YFHNPGYLLPRGSLLGLREPGCQ*GQTPPL
Trigger: CAGAGGAGGAGTCTGCCCCCATTGGCATCCGGGTTC...CCTGAGTCCCAAGAGAGAGCCCCTTGGCAAAAGGTACCCAGGATTGTGGAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp TGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCCTCCTGCTCGTCAATaGCAAGGCTGCCTCTTTTCC +
Preference number: 4 (lower is better)
Translates to: CCRLSNHRARSNEEKPRGPPARQ*QGCLFS
Trigger: GGAAAAGAGGCAGCCTTGGCATTGACGAGCAGGAGG...CCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp CAGAAGAAAGCTACCTGCCCAGGGGTAAGTCAAGAGACCAAGCTTGCCAAAGCCTGCCCTCCCAAGGACTaGCTTCGGGACCAAAGACAG +
Preference number: 4 (lower is better)
Translates to: QKKATCPGVSQETKLAKACPPKD*LRDQRQ
Trigger: CTGTCTTTGGTCCCGAAGGCAGTCCTTGGGAGGGCA...GGCTTTGGCAAGCTTGGTCTCTTGACTTACCCCTGGGCAGGTAGCTTTCTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCACGTGGCACTCATACTaGCCCTCATCTTCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: AVACPITEHEAMRKSPEGTWHSY*PSSSFL
Trigger: CAGGAAGGAAGATGAGGGCCAGTATGAGTGCCACGT...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp TACTTCCACAATCCTGGGTACCTTTTGCCAAGGGGCTCTCTCTTGGGACTCAGGTATACCACACACCACTaGGGCTGGGCAGCCACTCCT +
Preference number: 4 (lower is better)
Translates to: YFHNPGYLLPRGSLLGLRYTTHH*GWAATP
Trigger: AGGAGTGGCTGCCCAGCCCCAGTGGTGTGTGGTATA...CCTGAGTCCCAAGAGAGAGCCCCTTGGCAAAAGGTACCCAGGATTGTGGAAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGATGCTGCAGTCCAGTTaGAAAGCTGCCTTCTCAGTT +
Preference number: 4 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLMLQSS*KAAFSV
Trigger: AACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCAT...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp TGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCGGTCGGGAATGTTCTaGGCCTCTAGGATACATCTG +
Preference number: 4 (lower is better)
Translates to: CCRLSNHRARSNEEKPRGRSGMF*ASRIHL
Trigger: CAGATGTATCCTAGAGGCTCAGAACATTCCCGACCG...CCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR GCA 90 bp GAAAGGCTCACTGGAAGGAAGACAGAGGGAAGCACTCCTCCAACCTCTCAACCATCGAAGGCCGAGCTGTaGGTGGTTTTGAGGATGAGC +
Preference number: 4 (lower is better)
Translates to: ERLTGRKTEGSTPPTSQPSKAEL*VVLRMS
Trigger: GCTCATCCTCAAAACCACGCACAGCTCGGCCTTCGA...TGGTTGAGAGGTTGGAGGAGTGCTTCCCTCTGTCTTCCTTCCAGTGAGCCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp TGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCTCGGAAGGCTGCAGGTaGAAGATGGTGAGACGAAAG +
Preference number: 4 (lower is better)
Translates to: CRLSNHRARSNEEKPRGLSEGCR*KMVRRK
Trigger: CTTTCGTCTCACCATCTTCCACCTGCAGCCTTCCGA...GAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp TGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCAAGGTCACCAGGTCATaGAACTCCACTGTGCCCACT +
Preference number: 4 (lower is better)
Translates to: CRLSNHRARSNEEKPRGLKVTRS*NSTVPT
Trigger: AGTGGGCACAGTGGAGTTCCATGACCTGGTGACCTT...GAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
3UTR CAA 72 bp GGGCAACCCTCAGAAACTGGGTGCCGCCTGGAGCCCTaGACCCTTCCTTCAGGTTGGCTCGTTTATTATTAT +
Preference number: 4 (lower is better)
Translates to: GQPSETGCRLEP*TLPSGWLVYYY
Trigger: ATAATAATAAACGAGCCAACCTGAAGGAAGGGTCAAGGGCTCCAGGCGGCACCCAGTTTCTGAGGGTTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCAGAGTCTTCTTCTTaGGATATGTCCTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: AVACPITEHEAMRKSPEGSESSS*DMSSSS
Trigger: GGAGGAGGAGGACATATCGCAAGAAGAAGACTCTGA...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CCA 90 bp TCCTTGCAAACGTCCTGCGGTTGCTTTGCATATTTACTTGAGTCTTCTGCTGCTAGGCTCCCCTGGACTTaGCTGAGCTTCAGGCGGCTG +
Preference number: 4 (lower is better)
Translates to: SLQTSCGCFAYLLESSAARLPWT*LSFRRL
Trigger: CAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCT...AGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp GAAAGGCTCACTGGAAGGAAGACAGAGGGAAGCACTCCTCCAACCTCTCAACCACTCGCTCTGGGTGGTTaGGCTTCCATACAAACCACT +
Preference number: 4 (lower is better)
Translates to: ERLTGRKTEGSTPPTSQPLALGG*ASIQTT
Trigger: AGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAG...TGGTTGAGAGGTTGGAGGAGTGCTTCCCTCTGTCTTCCTTCCAGTGAGCCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp GGGACAACAAGAATGGCAAAGGGCTGTGCCTGGTCCTATCCGAGGACAATATCTTGCAGGTCTGTGATGTaGAGTAAGGCTGAGTTGCCC +
Preference number: 4 (lower is better)
Translates to: GTTRMAKGCAWSYPRTISCRSVM*SKAELP
Trigger: GGGCAACTCAGCCTTACTTCACATCACAGACCTGCA...AGATATTGTCCTCGGATAGGACCAGGCACAGCCCTTTGCCATTCTTGTTGTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp TCAGTTGTGAGAGAAACTCTTCCACAACATTATGGGATCCAAAAGGAGAGGACCGCGAGGCCACGCTGGTaGGGTTCAGGACCACACACT +
Preference number: 4 (lower is better)
Translates to: SVVRETLPQHYGIQKERTARPRW*GSGPHT
Trigger: AGTGTGTGGTCCTGAACCGCACCAGCGTGGCCTCGC...GGTCCTCTCCTTTTGGATCCCATAATGTTGTGGAAGAGTTTCTCTCACAACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp TCCTTGCAAACGTCCTGCGGTTGCTTTGCATATTTACTTGAGTCTTCTGCTGCTGAGCCATCTGGATCCTaGATCCACTCCGCAGCCTCG +
Preference number: 4 (lower is better)
Translates to: SLQTSCGCFAYLLESSAAEPSGS*IHSAAS
Trigger: CGAGGCTGCGGAGTGGATCCAGGATCCAGATGGCTC...AGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp TGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGATGCTGCAGTCCAGTTaGAAAGCTGCCTTCTCAGTT +
Preference number: 4 (lower is better)
Translates to: CCRLSNHRARSNEEKPRGMLQSS*KAAFSV
Trigger: AACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCAT...CCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR TCA 90 bp TCAGTTGTGAGAGAAACTCTTCCACAACATTATGGGATCCAAAAGGAGAGGACCCGGTACCATTCCTTCTaGGGGCTTGGTAGCCACTCC +
Preference number: 4 (lower is better)
Translates to: SVVRETLPQHYGIQKERTRYHSF*GLGSHS
Trigger: GGAGTGGCTACCAAGCCCTCAGAAGGAATGGTACCG...GGTCCTCTCCTTTTGGATCCCATAATGTTGTGGAAGAGTTTCTCTCACAACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp TCCTTGCAAACGTCCTGCGGTTGCTTTGCATATTTACTTGAGTCTTCTGCTGCTTGGAGTTCCGGCTTTTaGAGCGCACCAGCAGAATGG +
Preference number: 4 (lower is better)
Translates to: SLQTSCGCFAYLLESSAAWSSGF*SAPAEW
Trigger: CCATTCTGCTGGTGCGCTTCAAAAGCCGGAACTCCA...AGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp TCCTTGCAAACGTCCTGCGGTTGCTTTGCATATTTACTTGAGTCTTCTGCTGCTCACCACTTCTCGCTCTaGGTGGTTGGGCTTCCATAC +
Preference number: 4 (lower is better)
Translates to: SLQTSCGCFAYLLESSAAHHFSL*VVGLPY
Trigger: GTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTG...AGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp TACCCCATCTCTGTCTTCAACATGAACGCAGAGACACCATTGTTGGAAACAAATACACACCACTGGGGCTaGGCAGCCACTCCTCTACTC +
Preference number: 4 (lower is better)
Translates to: YPISVFNMNAETPLLETNTHHWG*AATPLL
Trigger: GAGTAGAGGAGTGGCTGCCCAGCCCCAGTGGTGTGT...ATTTGTTTCCAACAATGGTGTCTCTGCGTTCATGTTGAAGACAGAGATGGGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 72 bp TGTGACACTGGAGAGGACAGATGTCAGGAGTCTCTCTaGAGTACTCTGATCTCGGAGGACAAAAGCCTCAAC +
Preference number: 4 (lower is better)
Translates to: CDTGEDRCQESL*STLISEDKSLN
Trigger: GTTGAGGCTTTTGTCCTCCGAGATCAGAGTACTCAAGAGAGACTCCTGACATCTGTCCTCTCCAGTGTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp TCCTTGCAAACGTCCTGCGGTTGCTTTGCATATTTACTTGAGTCTTCTGCTGCTCGGTCGGGAATGTTCTaGGCCTCTAGGATACATCTG +
Preference number: 4 (lower is better)
Translates to: SLQTSCGCFAYLLESSAARSGMF*ASRIHL
Trigger: CAGATGTATCCTAGAGGCTCAGAACATTCCCGACCG...AGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp TCAGTTGTGAGAGAAACTCTTCCACAACATTATGGGATCCAAAAGGAGAGGACCCACTCCAGCTGTATCTaGCGGGTCTCCAGAACAGAC +
Preference number: 4 (lower is better)
Translates to: SVVRETLPQHYGIQKERTHSSCI*RVSRTD
Trigger: GTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTG...GGTCCTCTCCTTTTGGATCCCATAATGTTGTGGAAGAGTTTCTCTCACAACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CCA 90 bp TACCCCATCTCTGTCTTCAACATGAACGCAGAGACACCATTGTTGGAAACAAATCTCCACTGTGCCCACTaGCTGGAACCTCCATGTCAC +
Preference number: 4 (lower is better)
Translates to: YPISVFNMNAETPLLETNLHCAH*LEPPCH
Trigger: GTGACATGGAGGTTCCAGCCAGTGGGCACAGTGGAG...ATTTGTTTCCAACAATGGTGTCTCTGCGTTCATGTTGAAGACAGAGATGGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 72 bp CTCAACAGACAATATGCAGTGAAGCCTTCTAGCCACTaGAGGGCGCCATCACCATTTATCCGACAACACATG +
Preference number: 4 (lower is better)
Translates to: LNRQYAVKPSSH*RAPSPFIRQHM
Trigger: CATGTGTTGTCGGATAAATGGTGATGGCGCCCTCAAGTGGCTAGAAGGCTTCACTGCATATTGTCTGTTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp TCTGTTTATTCTCAGGACAAGGCTTTGCAGAAATCACTCCTTAAATTTACTTCCCCGGTACAGCAGAGGTaGGAGCCTCTGGAAGCGCAG +
Preference number: 4 (lower is better)
Translates to: SVYSQDKALQKSLLKFTSPVQQR*EPLEAQ
Trigger: CTGCGCTTCCAGAGGCTCTCACCTCTGCTGTACCGG...GGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp TCTGTTTATTCTCAGGACAAGGCTTTGCAGAAATCACTCCTTAAATTTACTTCCCACAGCACGGCGAAGTaGGAGTTCGGGCTGGTCTGG +
Preference number: 4 (lower is better)
Translates to: SVYSQDKALQKSLLKFTSHSTAK*EFGLVW
Trigger: CCAGACCAGCCCGAACTCGCACTTCGCCGTGCTGTG...GGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR TCA 90 bp TCTGTTTATTCTCAGGACAAGGCTTTGCAGAAATCACTCCTTAAATTTACTTCCTGTCACTGGCCCGGCTaGTGCTCAGGCGGACATTGT +
Preference number: 4 (lower is better)
Translates to: SVYSQDKALQKSLLKFTSCHWPG*CSGGHC
Trigger: ACAATGTCCGCCTGAGCATCAGCCGGGCCAGTGACA...GGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR GCA 90 bp TCTGTTTATTCTCAGGACAAGGCTTTGCAGAAATCACTCCTTAAATTTACTTCCGCAGCCTGCCCACTGTaGGGACAGTGCAGGAGAAGT +
Preference number: 4 (lower is better)
Translates to: SVYSQDKALQKSLLKFTSAACPL*GQCRRS
Trigger: ACTTCTCCTGCACTGTCCGCACAGTGGGCAGGCTGC...GGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 72 bp GATTTCTTTGCTCCTTGCAAACGTCCTGCGGTTGCTTaGCATATTTACTTGAGTCTTCTGCTGCTACAGAGC +
Preference number: 4 (lower is better)
Translates to: DFFAPCKRPAVA*HIYLSLLLLQS
Trigger: GCTCTGTAGCAGCAGAAGACTCAAGTAAATATGCAAAGCAACCGCAGGACGTTTGCAAGGAGCAAAGAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 72 bp CAACAACTCCGGCTGAAGGAAGAGATAAGATACAAATaGGGCCCACGCTACACATATTTTTCAAGTCTTGCT +
Preference number: 4 (lower is better)
Translates to: QQLRLKEEIRYK*GPRYTYFSSLA
Trigger: AGCAAGACTTGAAAAATATGTGTAGCGTGGGCCCAATTTGTATCTTATCTCTTCCTTCAGCCGGAGTTGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
3UTR CAA 72 bp GCCTTTGTGTTGTCTGTTTATTCTCAGGACAAGGCTTaGCAGAAATCACTCCTTAAATTTACTTCCACAATC +
Preference number: 4 (lower is better)
Translates to: AFVLSVYSQDKA*QKSLLKFTSTI
Trigger: GATTGTGGAAGTAAATTTAAGGAGTGATTTCTGCAAAGCCTTGTCCTGAGAATAAACAGACAACACAAAGGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS TCA 90 bp GTCCTGGGGGCTCGCCTCGAGCACAGTGAGCCGGTACAGCAGAGGTaGGAGCCTCTGGAAGCGCAGCCTGCCCTCCCAAGGACTGCCTTC +
Preference number: 5 (lower is better)
Translates to: VLGARLEHSEPVQQR*EPLEAQPALPRTAF
Trigger: GAAGGCAGTCCTTGGGAGGGCAGGCTGCGCTTCCAGAGGCTCTCACCTCTGCTGTACCGGCTCACTGTGCTCGAGGCGAGCCCCCAGGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS TCA 90 bp CTCGGCAGCTGTAGGTCCCGCTGTCCTGTACCGCCACATTCTGGATaGAGAGCCTGTACACGCCGGAGGACGGGCTCTCCGCGTGCAGCC +
Preference number: 5 (lower is better)
Translates to: LGSCRSRCPVPPHSG*RACTRRRTGSPRAA
Trigger: GGCTGCACGCGGAGAGCCCGTCCTCCGGCGTGTACAGGCTCTTCATCCAGAATGTGGCGGTACAGGACAGCGGGACCTACAGCTGCCGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS TCA 90 bp GGCAGGAGTAGTTGCCTGTGTCCTGGGGGCTCGCCTCGAGCACAGTaGGCCGGTACAGCAGAGGTGAGAGCCTCTGGAAGCGCAGCCTGC +
Preference number: 5 (lower is better)
Translates to: GRSSCLCPGGSPRAQ*AGTAEVRASGSAAC
Trigger: GCAGGCTGCGCTTCCAGAGGCTCTCACCTCTGCTGTACCGGCTCACTGTGCTCGAGGCGAGCCCCCAGGACACAGGCAACTACTCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp CCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTGGGAGTGGGACGGAGATGCTGCTTTaGAGGGGCAGCACGACGATG +
Preference number: 5 (lower is better)
Translates to: PEGSPDPTLPWATSAGSGTEMLL*RGSTTM
Trigger: CATCGTCGTGCTGCCCCTCAAAAGCAGCATCTCCGT...CCCACTCCCAGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS GCA 90 bp GAGGCCACGCTGGTGCGGTTCAGGACCACACACTCCAGCTGTATCTaGCGGGTCTCCAGAACAGACAGGCTCCCCTGGACTTGGCTGAGC +
Preference number: 5 (lower is better)
Translates to: EATLVRFRTTHSSCI*RVSRTDRLPWTWLS
Trigger: GCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTGTGTGGTCCTGAACCGCACCAGCGTGGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 90 bp GCAGAGGTGAGAGCCTCTGGAAGCGCAGCCTGCCCTCCCAAGGACTaGCTTCGGGACCAAAGACAGCATCAGGTCCCACGCTCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: AEVRASGSAACPPKD*LRDQRQHQVPRSAG
Trigger: TCCTGCTGAGCGTGGGACCTGATGCTGTCTTTGGTCCCGAAGGCAGTCCTTGGGAGGGCAGGCTGCGCTTCCAGAGGCTCTCACCTCTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 90 bp CGCTCTGGGTGGTTGGGCTTCCATACAAACCACTCCACCAGGAGCTaGGAGGCCACGCTGGTGCGGTTCAGGACCACACACTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: RSGWLGFHTNHSTRS*EATLVRFRTTHSSC
Trigger: ACAGCTGGAGTGTGTGGTCCTGAACCGCACCAGCGTGGCCTCGCAGCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp AGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTCGCACGGTGAACTCTTaGTCAGTGGGCTGGACGTTG +
Preference number: 5 (lower is better)
Translates to: RKSPEGSPDPTLPWATSARTVNS*SVGWTL
Trigger: CAACGTCCAGCCCACTGACAAAGAGTTCACCGTGCG...AGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp AGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCCATGGGCAACGTCTGCTAGCCGCCCCTTCAGGTaGTTTTTGGCAGCCTGTTCG +
Preference number: 5 (lower is better)
Translates to: RKSPEGSPDPTLPWATSASRPFR*FLAACS
Trigger: CGAACAGGCTGCCAAAAACAACCTGAAGGGGCGGCT...AGCAGACGTTGCCCATGGCAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 90 bp CACTCCAGCTGTATCTGCCGGGTCTCCAGAACAGACAGGCTCCCCTaGACTTGGCTGAGCTTCAGGCGGCTGTCTGGCTGCTTCACAGTG +
Preference number: 5 (lower is better)
Translates to: HSSCICRVSRTDRLP*TWLSFRRLSGCFTV
Trigger: CACTGTGAAGCAGCCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 90 bp AGCTGTATCTGCCGGGTCTCCAGAACAGACAGGCTCCCCTGGACTTaGCTGAGCTTCAGGCGGCTGTCTGGCTGCTTCACAGTGACCTCT +
Preference number: 5 (lower is better)
Translates to: SCICRVSRTDRLPWT*LSFRRLSGCFTVTS
Trigger: AGAGGTCACTGTGAAGCAGCCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 90 bp GTGGAAGGTAGCATCTCGGCTCAGGTGGGCCACCACTTCTCGCTCTaGGTGGTTGGGCTTCCATACAAACCACTCCACCAGGAGCTGCGA +
Preference number: 5 (lower is better)
Translates to: VEGSISAQVGHHFSL*VVGLPYKPLHQELR
Trigger: TCGCAGCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTGGCCCACCTGAGCCGAGATGCTACCTTCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGCTGGAGTTCCGGCTTTaGAAGCGCACCAGCAGAATG +
Preference number: 5 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLLEFRL*KRTSRM
Trigger: CATTCTGCTGGTGCGCTTCAAAAGCCGGAACTCCAG...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCGCTTTCCAAGTGGCCTaGGGGCAGGATCTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: VACPITEHEAMRKSPEGSAFQVA*GQDLVL
Trigger: CAGCACCAGATCCTGCCCCAAGGCCACTTGGAAAGC...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS GCA 90 bp AGGCCACAGCAAAGCGGGAGTCCTGGCTCGATCGAGACAGGATGCTaGAGTCCAGTTGGAAAGCTGCCTTCTCAGTTACGGTGGCATTGG +
Preference number: 5 (lower is better)
Translates to: RPQQSGSPGSIETGC*SPVGKLPSQLRWHW
Trigger: CCAATGCCACCGTAACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCATCCTGTCTCGATCGAGCCAGGACTCCCGCTTTGCTGTGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 90 bp ACCAGGCCACAGCAAAGCGGGAGTCCTGGCTCGATCGAGACAGGATaGTGCAGTCCAGTTGGAAAGCTGCCTTCTCAGTTACGGTGGCAT +
Preference number: 5 (lower is better)
Translates to: TRPQQSGSPGSIETG*CSPVGKLPSQLRWH
Trigger: ATGCCACCGTAACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCATCCTGTCTCGATCGAGCCAGGACTCCCGCTTTGCTGTGGCCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 90 bp AAGCGGGAGTCCTGGCTCGATCGAGACAGGATGCTGCAGTCCAGTTaGAAAGCTGCCTTCTCAGTTACGGTGGCATTGGGGACCACTGTG +
Preference number: 5 (lower is better)
Translates to: KRESWLDRDRMLQSS*KAAFSVTVALGTTV
Trigger: CACAGTGGTCCCCAATGCCACCGTAACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCATCCTGTCTCGATCGAGCCAGGACTCCCGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCAGCCGCCCCTTCAGGTaGTTTTTGGCAGCCTGTTCG +
Preference number: 5 (lower is better)
Translates to: AVACPITEHEAMRKSPEGSRPFR*FLAACS
Trigger: CGAACAGGCTGCCAAAAACAACCTGAAGGGGCGGCT...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp ACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCCCTGACCCGACCCTGATTCCTTCTGAGGGCTaGGTAGCCACTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: TEHEAMRKSPEGSPDPTLIPSEG*VATPPH
Trigger: ATGTGGAGGAGTGGCTACCAAGCCCTCAGAAGGAAT...CAGGGTCGGGTCAGGGGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp GCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTGGGCAAAATCGCTGTaGAGGACTGGCACGGCATTA +
Preference number: 5 (lower is better)
Translates to: AVACPITEHEAMRKSPEGWAKSL*RTGTAL
Trigger: TAATGCCGTGCCAGTCCTCAACAGCGATTTTGCCCA...GCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp CAGAAGAAAGCTACCTGCCCAGGGGTAAGTCAAGAGACCAAGCTTGCCAAAGCCGGCCGCTTGCTCTCCTaGTCTATGAACTCGCCAGTG +
Preference number: 5 (lower is better)
Translates to: QKKATCPGVSQETKLAKAGRLLS*SMNSPV
Trigger: CACTGGCGAGTTCATAGACAAGGAGAGCAAGCGGCC...GGCTTTGGCAAGCTTGGTCTCTTGACTTACCCCTGGGCAGGTAGCTTTCTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CAA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCATTCCTTCTGAGGGCTaGGTAGCCACTCCTCCACAT +
Preference number: 5 (lower is better)
Translates to: VACPITEHEAMRKSPEGSIPSEG*VATPPH
Trigger: ATGTGGAGGAGTGGCTACCAAGCCCTCAGAAGGAAT...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp TGCTGTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTGGAGTTCCGGCTTTaGAAGCGCACCAGCAGAATG +
Preference number: 5 (lower is better)
Translates to: CCRLSNHRARSNEEKPRGLEFRL*KRTSRM
Trigger: CATTCTGCTGGTGCGCTTCAAAAGCCGGAACTCCAG...CCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp GTCGCCTGTCCAATCACAGAGCACGAAGCAATGAGGAAAAGCCCAGAGGGCTCCTTCCCCTCTGAGTTCTaGCTGGAGTTCCGGCTTTTG +
Preference number: 5 (lower is better)
Translates to: VACPITEHEAMRKSPEGSFPSEF*LEFRLL
Trigger: CAAAAGCCGGAACTCCAGCAAGAACTCAGAGGGGAA...GGAGCCCTCTGGGCTTTTCCTCATTGCTTCGTGCTCTGTGATTGGACAGGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 90 bp CTCAGCAGGACTGTCCTCTCTGTCGGATCTTCAGAGTCTTCTTCTTaGGATATGTCCTCCTCCTCCTCCTCTTCCTCCTGCTCGTCAATG +
Preference number: 5 (lower is better)
Translates to: LSRTVLSVGSSESSS*DMSSSSSSSSCSSM
Trigger: CATTGACGAGCAGGAGGAAGAGGAGGAGGAGGAGGACATATCGCAAGAAGAAGACTCTGAAGATCCGACAGAGAGGACAGTCCTGCTGAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp AGGGGGACAACAAGAATGGCAAAGGGCTGTGCCTGGTCCTATCCGAGGACAATATTCCCCTCTGAGTTCTaGCTGGAGTTCCGGCTTTTG +
Preference number: 5 (lower is better)
Translates to: RGTTRMAKGCAWSYPRTIFPSEF*LEFRLL
Trigger: CAAAAGCCGGAACTCCAGCAAGAACTCAGAGGGGAA...TATTGTCCTCGGATAGGACCAGGCACAGCCCTTTGCCATTCTTGTTGTCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS-3UTR CAA 90 bp TTTACAATTGATGAGGCTCCAGGGCAGCTAAGCATCTGGCTTAACAGAGTGGAGCGCACGGTGAACTCTTaGTCAGTGGGCTGGACGTTG +
Preference number: 5 (lower is better)
Translates to: FTIDEAPGQLSIWLNRVERTVNS*SVGWTL
Trigger: CAACGTCCAGCCCACTGACAAAGAGTTCACCGTGCG...CTCCACTCTGTTAAGCCAGATGCTTAGCTGCCCTGGAGCCTCATCAATTGTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS TCA 90 bp AAGGGTAGAAGAAGACAAAGTAGAAGAGGGCATCGTTGGAGCAGATaGGCGACTGCAGGGTTGAACTTGTGTCTAGAACCCGGATGCCAA +
Preference number: 5 (lower is better)
Translates to: KGRRRQSRRGHRWSR*ATAGLNLCLEPGCQ
Trigger: TTGGCATCCGGGTTCTAGACACAAGTTCAACCCTGCAGTCGCTCATCTGCTCCAACGATGCCCTCTTCTACTTTGTCTTCTTCTACCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS-3UTR CAA 90 bp CACACCCATGAATCGAAGGAACAGAACAAAAGACATTCTTTCTTCGTGACTGAGTGGGCAAAATCGCTGTaGAGGACTGGCACGGCATTA +
Preference number: 5 (lower is better)
Translates to: HTHESKEQNKRHSFFVTEWAKSL*RTGTAL
Trigger: TAATGCCGTGCCAGTCCTCAACAGCGATTTTGCCCA...CTCAGTCACGAAGAAAGAATGTCTTTTGTTCTGTTCCTTCGATTCATGGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043983.11
CDS TCA 72 bp GCTCGCCTCGAGCACAGTGAGCCGGTACAGCAGAGGTaGGAGCCTCTGGAAGCGCAGCCTGCCCTCCCAAGG +
Preference number: 6 (lower is better)
Translates to: ARLEHSEPVQQR*EPLEAQPALPR
Trigger: CCTTGGGAGGGCAGGCTGCGCTTCCAGAGGCTCTCACCTCTGCTGTACCGGCTCACTGTGCTCGAGGCGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS TCA 72 bp AGTTGCCTGTGTCCTGGGGGCTCGCCTCGAGCACAGTaGGCCGGTACAGCAGAGGTGAGAGCCTCTGGAAGC +
Preference number: 6 (lower is better)
Translates to: SCLCPGGSPRAQ*AGTAEVRASGS
Trigger: GCTTCCAGAGGCTCTCACCTCTGCTGTACCGGCTCACTGTGCTCGAGGCGAGCCCCCAGGACACAGGCAACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 72 bp AAGAGCCTGTACACGCCGGAGGACGGGCTCTCCGCGTaGAGCCGCCCCTTCAGGTTGTTTTTGGCAGCCTGT +
Preference number: 6 (lower is better)
Translates to: KSLYTPEDGLSA*SRPFRLFLAAC
Trigger: ACAGGCTGCCAAAAACAACCTGAAGGGGCGGCTGCACGCGGAGAGCCCGTCCTCCGGCGTGTACAGGCTCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 72 bp AGAGCCTCTGGAAGCGCAGCCTGCCCTCCCAAGGACTaGCTTCGGGACCAAAGACAGCATCAGGTCCCACGC +
Preference number: 6 (lower is better)
Translates to: RASGSAACPPKD*LRDQRQHQVPR
Trigger: GCGTGGGACCTGATGCTGTCTTTGGTCCCGAAGGCAGTCCTTGGGAGGGCAGGCTGCGCTTCCAGAGGCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CAA 72 bp CTGCCGGGTCTCCAGAACAGACAGGCTCCCCTGGACTaGGCTGAGCTTCAGGCGGCTGTCTGGCTGCTTCAC +
Preference number: 6 (lower is better)
Translates to: LPGLQNRQAPLD*AELQAAVWLLH
Trigger: GTGAAGCAGCCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS TCA 72 bp GGGTGTGCTGGACGGTCTCGGTGGCCACTTCGCAGCTaGGCTCCAGGGGATCCTGTTCCACTTTGTGCAGTG +
Preference number: 6 (lower is better)
Translates to: GCAGRSRWPLRS*APGDPVPLCAV
Trigger: CACTGCACAAAGTGGAACAGGATCCCCTGGAGCTCAGCTGCGAAGTGGCCACCGAGACCGTCCAGCACACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS TCA 72 bp TGTAGGTCCCGCTGTCCTGTACCGCCACATTCTGGATaGAGAGCCTGTACACGCCGGAGGACGGGCTCTCCG +
Preference number: 6 (lower is better)
Translates to: CRSRCPVPPHSG*RACTRRRTGSP
Trigger: CGGAGAGCCCGTCCTCCGGCGTGTACAGGCTCTTCATCCAGAATGTGGCGGTACAGGACAGCGGGACCTACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp TGCCGGGTCTCCAGAACAGACAGGCTCCCCTGGACTTaGCTGAGCTTCAGGCGGCTGTCTGGCTGCTTCACA +
Preference number: 6 (lower is better)
Translates to: CRVSRTDRLPWT*LSFRRLSGCFT
Trigger: TGTGAAGCAGCCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp TGTATCTGCCGGGTCTCCAGAACAGACAGGCTCCCCTaGACTTGGCTGAGCTTCAGGCGGCTGTCTGGCTGC +
Preference number: 6 (lower is better)
Translates to: CICRVSRTDRLP*TWLSFRRLSGC
Trigger: GCAGCCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp GGCTCAGGTGGGCCACCACTTCTCGCTCTGGGTGGTTaGGCTTCCATACAAACCACTCCACCAGGAGCTGCG +
Preference number: 6 (lower is better)
Translates to: GSGGPPLLALGG*ASIQTTPPGAA
Trigger: CGCAGCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTGGCCCACCTGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CAA 90 bp CAGCTGTATCTGCCGGGTCTCCAGAACAGACAGGCTCCCCTGGACTaGGCTGAGCTTCAGGCGGCTGTCTGGCTGCTTCACAGTGACCTC +
Preference number: 6 (lower is better)
Translates to: QLYLPGLQNRQAPLD*AELQAAVWLLHSDL
Trigger: GAGGTCACTGTGAAGCAGCCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 72 bp CTGGTGCGGTTCAGGACCACACACTCCAGCTGTATCTaGCGGGTCTCCAGAACAGACAGGCTCCCCTGGACT +
Preference number: 6 (lower is better)
Translates to: LVRFRTTHSSCI*RVSRTDRLPWT
Trigger: AGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTGTGTGGTCCTGAACCGCACCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 72 bp TGGTTGGGCTTCCATACAAACCACTCCACCAGGAGCTaGGAGGCCACGCTGGTGCGGTTCAGGACCACACAC +
Preference number: 6 (lower is better)
Translates to: WLGFHTNHSTRS*EATLVRFRTTH
Trigger: GTGTGTGGTCCTGAACCGCACCAGCGTGGCCTCGCAGCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp TCTCGGCTCAGGTGGGCCACCACTTCTCGCTCTGGGTaGTTGGGCTTCCATACAAACCACTCCACCAGGAGC +
Preference number: 6 (lower is better)
Translates to: SRLRWATTSRSG*LGFHTNHSTRS
Trigger: GCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTGGCCCACCTGAGCCGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CAA 90 bp ATGCTGCAGTCCAGTTGGAAAGCTGCCTTCTCAGTTACGGTGGCATaGGGGACCACTGTGTCCACCTGGAGGGCAGCGTCGGGTCGCATG +
Preference number: 6 (lower is better)
Translates to: MLQSSWKAAFSVTVA*GTTVSTWRAASGRM
Trigger: CATGCGACCCGACGCTGCCCTCCAGGTGGACACAGTGGTCCCCAATGCCACCGTAACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp AGCATCTCGGCTCAGGTGGGCCACCACTTCTCGCTCTaGGTGGTTGGGCTTCCATACAAACCACTCCACCAG +
Preference number: 6 (lower is better)
Translates to: SISAQVGHHFSL*VVGLPYKPLHQ
Trigger: CTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTGGCCCACCTGAGCCGAGATGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 72 bp GCGACTGCAGGGTTGAACTTGTGTCTAGAACCCGGATaGCAATGGGGGCAGACTCCTCCTCTGTCAGTCGGT +
Preference number: 6 (lower is better)
Translates to: ATAGLNLCLEPG*QWGQTPPLSVG
Trigger: ACCGACTGACAGAGGAGGAGTCTGCCCCCATTGGCATCCGGGTTCTAGACACAAGTTCAACCCTGCAGTCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp TCCTGGCTCGATCGAGACAGGATGCTGCAGTCCAGTTaGAAAGCTGCCTTCTCAGTTACGGTGGCATTGGGG +
Preference number: 6 (lower is better)
Translates to: SWLDRDRMLQSS*KAAFSVTVALG
Trigger: CCCCAATGCCACCGTAACTGAGAAGGCAGCTTTCCAACTGGACTGCAGCATCCTGTCTCGATCGAGCCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CCA 72 bp GCAGGGTTGAACTTGTGTCTAGAACCCGGATGCCAATaGGGGCAGACTCCTCCTCTGTCAGTCGGTACCATT +
Preference number: 6 (lower is better)
Translates to: AGLNLCLEPGCQ*GQTPPLSVGTI
Trigger: AATGGTACCGACTGACAGAGGAGGAGTCTGCCCCCATTGGCATCCGGGTTCTAGACACAAGTTCAACCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS CAA 90 bp GGCACCCCGTTCTTCCCCTCTGAGTTCTTGCTGGAGTTCCGGCTTTaGAAGCGCACCAGCAGAATGGTGATGATGAGGATGCCAAAGATG +
Preference number: 6 (lower is better)
Translates to: GTPFFPSEFLLEFRL*KRTSRMVMMRMPKM
Trigger: CATCTTTGGCATCCTCATCATCACCATTCTGCTGGTGCGCTTCAAAAGCCGGAACTCCAGCAAGAACTCAGAGGGGAAGAACGGGGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS GCA 72 bp ATGCTGCTTTCCAAGTGGCCTTGGGGCAGGATCTGGTaGTGCTGGGGGACTTTAACTACCCAGTTATCTGTG +
Preference number: 6 (lower is better)
Translates to: MLLSKWPWGRIW*CWGTLTTQLSV
Trigger: CACAGATAACTGGGTAGTTAAAGTCCCCCAGCAGCACCAGATCCTGCCCCAAGGCCACTTGGAAAGCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS CCA 72 bp GAGATGCTGCTTTCCAAGTGGCCTTGGGGCAGGATCTaGTGCTGCTGGGGGACTTTAACTACCCAGTTATCT +
Preference number: 6 (lower is better)
Translates to: EMLLSKWPWGRI*CCWGTLTTQLS
Trigger: AGATAACTGGGTAGTTAAAGTCCCCCAGCAGCACCAGATCCTGCCCCAAGGCCACTTGGAAAGCAGCATCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000195164.2
CDS CAA 72 bp TTCTTCCCCTCTGAGTTCTTGCTGGAGTTCCGGCTTTaGAAGCGCACCAGCAGAATGGTGATGATGAGGATG +
Preference number: 6 (lower is better)
Translates to: FFPSEFLLEFRL*KRTSRMVMMRM
Trigger: CATCCTCATCATCACCATTCTGCTGGTGCGCTTCAAAAGCCGGAACTCCAGCAAGAACTCAGAGGGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2
CDS TCA 72 bp AGAAGACAAAGTAGAAGAGGGCATCGTTGGAGCAGATaGGCGACTGCAGGGTTGAACTTGTGTCTAGAACCC +
Preference number: 6 (lower is better)
Translates to: RRQSRRGHRWSR*ATAGLNLCLEP
Trigger: GGGTTCTAGACACAAGTTCAACCCTGCAGTCGCTCATCTGCTCCAACGATGCCCTCTTCTACTTTGTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043983.11
ENSMUST00000195164.2