RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for IGSF10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036334

Ensembl transcript IDs: ENSMUST00000039419.12, ENSMUST00000193455.6, ENSMUST00000194546.6, ENSMUST00000195983.2

Found 800 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGCATGTGGTTGGCATTAAAATTGTCCTAAGGAAAAAGCTCTATTaGAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTA +
Preference number: 1 (lower is better)
Translates to: MHVVGIKIVLRKKLY*RTLSFAGWVADRKL
Trigger: TAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAGCTTTTTCCTTAGGACAATTTTAATGCCAACCACATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR TCA 90 bp TCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGACCTTaGAATCTAATGGAATTGGGTATACTTACCATTTCTGGCTATAAG +
Preference number: 1 (lower is better)
Translates to: SFAGWVADRKLKTRP*NLMELGILTISGYK
Trigger: CTTATAGCCAGAAATGGTAAGTATACCCAATTCCATTAGATTTCAAGGTCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR TCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACGGTGGGTATCATTTaGCCTCTGGCAGCCATAGAG +
Preference number: 2 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKTVGII*PLAAIE
Trigger: CTCTATGGCTGCCAGAGGTCAAATGATACCCACCGT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAAATGGCTCTGAACCATaGGTGCCTGAGCAAGGCTTT +
Preference number: 2 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRNGSEP*VPEQGF
Trigger: AAAGCCTTGCTCAGGCACCCATGGTTCAGAGCCATT...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGTTAAGAGTTTGCTTTaGAATCCATGGAAACTCGGA +
Preference number: 2 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQVKSLL*NPWKLG
Trigger: TCCGAGTTTCCATGGATTTCAAAGCAAACTCTTAAC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR GCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGTGACAAAATATTTGTaGATTGAGATTAACACGGGC +
Preference number: 2 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVVTKYL*IEINTG
Trigger: GCCCGTGTTAATCTCAATGCACAAATATTTTGTCAC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAAGTACCAATGTTAACTaGAGTCAGCTCATGTCTGAG +
Preference number: 2 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRSTNVN*SQLMSE
Trigger: CTCAGACATGAGCTGACTCCAGTTAACATTGGTACT...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGAGTTGTCTAGACTCGTaGAGGAATTCTGCCTTAGAA +
Preference number: 2 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKSCLDS*RNSALE
Trigger: TTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGTTAAGAGTTTGCTTTaGAATCCATGGAAACTCGGA +
Preference number: 2 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIVKSLL*NPWKLG
Trigger: TCCGAGTTTCCATGGATTTCAAAGCAAACTCTTAAC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR CCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAAAAGTCTGCAGATGTTaGCTTTTGTTCCATTCAGTT +
Preference number: 2 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRKVCRC*LLFHSV
Trigger: AACTGAATGGAACAAAAGCCAACATCTGCAGACTTT...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR CAA 90 bp GTTGGCATTAAAATTGTCCTAAGGAAAAAGCTCTATTGCAGAACCTaGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGA +
Preference number: 2 (lower is better)
Translates to: VGIKIVLRKKLYCRT*SFAGWVADRKLKTR
Trigger: TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAGCTTTTTCCTTAGGACAATTTTAATGCCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAAAGTCTGCAGATGTTaGCTTTTGTTCCATTCAGTT +
Preference number: 2 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIKVCRC*LLFHSV
Trigger: AACTGAATGGAACAAAAGCCAACATCTGCAGACTTT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR GCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGTTGGCAAAATCAAAGTaGCTTAAGTTAAGAGTTTGC +
Preference number: 2 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKLAKSK*LKLRVC
Trigger: GCAAACTCTTAACTTAAGGCACTTTGATTTTGCCAA...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTGGCAAAATCAAAGTaGCTTAAGTTAAGAGTTTGC +
Preference number: 2 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCLAKSK*LKLRVC
Trigger: GCAAACTCTTAACTTAAGGCACTTTGATTTTGCCAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTGGCAAAATCAAAGTaGCTTAAGTTAAGAGTTTGC +
Preference number: 2 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLAKSK*LKLRVC
Trigger: GCAAACTCTTAACTTAAGGCACTTTGATTTTGCCAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGGAATCAGTTCACAGTaGATTTATTTACAAGTCTCA +
Preference number: 2 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTGISSQ*IYLQVS
Trigger: TGAGACTTGTAAATAAATGCACTGTGAACTGATTCC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAAAGTCTGCAGATGTTaGCTTTTGTTCCATTCAGTT +
Preference number: 2 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVKVCRC*LLFHSV
Trigger: AACTGAATGGAACAAAAGCCAACATCTGCAGACTTT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGAATGTGAAACCCGCTTaGCACTTCCCAATGTGTGAG +
Preference number: 3 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKNVKPA*HFPMCE
Trigger: CTCACACATTGGGAAGTGCAAAGCGGGTTTCACATT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR CCA 72 bp GGCATTACGGAAAGTAGGCATCAAGTTCCAGATGAATaGCATGTGCTAACAAAGCTCTTGGTCTTAGTGATC +
Preference number: 3 (lower is better)
Translates to: GITESRHQVPDE*HVLTKLLVLVI
Trigger: GATCACTAAGACCAAGAGCTTTGTTAGCACATGCCATTCATCTGGAACTTGATGCCTACTTTCCGTAATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTGCAGATGTTGGCTTTaGTTCCATTCAGTTTCTCCC +
Preference number: 3 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCCRCWL*FHSVSP
Trigger: GGGAGAAACTGAATGGAACAAAAGCCAACATCTGCA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR-3UTR CAA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGCGATGTTTGTAACATaGGTGGAAAACAGACACAAG +
Preference number: 3 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRAMFVT*VENRHK
Trigger: CTTGTGTCTGTTTTCCACCAATGTTACAAACATCGC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGCAGATGTTGGCTTTaGTTCCATTCAGTTTCTCCC +
Preference number: 3 (lower is better)
Translates to: SMETRNQFTVHLFTSLTACRCWL*FHSVSP
Trigger: GGGAGAAACTGAATGGAACAAAAGCCAACATCTGCA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR GCA 72 bp GTTGGCATTAAAATTGTCCTAAGGAAAAAGCTCTATTaGAGAACCTTGTCATTTGCTGGGTGGGTTGCAGAT +
Preference number: 3 (lower is better)
Translates to: VGIKIVLRKKLY*RTLSFAGWVAD
Trigger: ATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAGCTTTTTCCTTAGGACAATTTTAATGCCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
3UTR-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGATGTTGGCTTTaGTTCCATTCAGTTTCTCCC +
Preference number: 3 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHCRCWL*FHSVSP
Trigger: GGGAGAAACTGAATGGAACAAAAGCCAACATCTGCA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR GCA 72 bp AACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTaGGATGTTTGTAACATTGGTGGAAAACAGACACAA +
Preference number: 3 (lower is better)
Translates to: NLIFHVVSIHSV*DVCNIGGKQTQ
Trigger: TTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR GCA 72 bp TTGTTGGCAAAATCAAAGTGCCTTAAGTTAAGAGTTTaGTTTGAAATCCATGGAAACTCGGAATCAGTTCAC +
Preference number: 3 (lower is better)
Translates to: LLAKSKCLKLRV*FEIHGNSESVH
Trigger: GTGAACTGATTCCGAGTTTCCATGGATTTCAAAGCAAACTCTTAACTTAAGGCACTTTGATTTTGCCAACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACCAGGCAGATGGCAGTaGGGGAGATCAGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQPGRWQ*GRSASS
Trigger: GCTGCTTGCTGATCTCCCTCACTGCCATCTGCCTGG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACCTCTCCTGTCCTCCTaGGCATGCTCCTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQPLLSS*ACSWEG
Trigger: ACCTTCCCAGGAGCATGCTCAGGAGGACAGGAGAGG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGCACTTCAGTGCCATTaGGCCGAGTGGCAGCCATTG +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVALQCH*AEWQPL
Trigger: CAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACCACATTGGCTGGGATaGCGTCTGGGATGGAGGTCA +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQPHWLG*RLGWRS
Trigger: TGACCTCCATCCCAGACGGCATCCCAGCCAATGTGG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGGGGCAGTTCAGTTATaGCCAGGAGAGAAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVGAVQL*PGEKLL
Trigger: CAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCACAGTGGAGCTGCATTaGCTCTCCTGTCCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVTVELH*LSCPPE
Trigger: CTCAGGAGGACAGGAGAGGCAATGCAGCTCCACTGT...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGGCTGGGATGCCGTCTaGGATGGAGGTCAGGTACCG +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKGWDAV*DGGQVP
Trigger: CGGTACCTGACCTCCATCCCAGACGGCATCCCAGCC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGGCTGGGATGCCGTCTaGGATGGAGGTCAGGTACCG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIGWDAV*DGGQVP
Trigger: CGGTACCTGACCTCCATCCCAGACGGCATCCCAGCC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCCCTGGGGGTGATGGTTaGGCCTTTCCTGTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVPGGDG*AFPVLQ
Trigger: CTGAAGAACAGGAAAGGCCCAACCATCACCCCCAGG...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCCCACTGCTGAGGAGTaGTGGTGTGGCGGAGGCTCT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGPTAEE*WCGGGS
Trigger: AGAGCCTCCGCCACACCACCACTCCTCAGCAGTGGG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCACTACCCTTCTCTCTaGGCCCGAGGAGCTGGTAGC +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIHYPSL*ARGAGS
Trigger: GCTACCAGCTCCTCGGGCTCAGAGAGAAGGGTAGTG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCATGGCTCCCCCTGTTaGGGGGTGTGCACTTTGGGA +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKHGSPC*GVCTLG
Trigger: TCCCAAAGTGCACACCCCGCAACAGGGGGAGCCATG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCATGGCTCCCCCTGTTaGGGGGTGTGCACTTTGGGA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCHGSPC*GVCTLG
Trigger: TCCCAAAGTGCACACCCCGCAACAGGGGGAGCCATG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATCGTTCCACATTGGCTaGGATGCCGTCTGGGATGGA +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQSFHIG*DAVWDG
Trigger: TCCATCCCAGACGGCATCCCAGCCAATGTGGAACGA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAGTGCTGCCCAGTGTTaGGGGTCAATTCTCCGAGCA +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQSAAQC*GSILRA
Trigger: TGCTCGGAGAATTGACCCCCAACACTGGGCAGCACT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCCCACTGCTGAGGAGTaGTGGTGTGGCGGAGGCTCT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVPTAEE*WCGGGS
Trigger: AGAGCCTCCGCCACACCACCACTCCTCAGCAGTGGG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGAGACTCTGGTCCAGTaGATGGTGGGCTTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQETLVQ*MVGFGS
Trigger: AGACCCAAAGCCCACCATCCACTGGACCAGAGTCTC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCAGGCAGATGGCAGTaGGGGAGATCAGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPGRWQ*GRSASS
Trigger: GCTGCTTGCTGATCTCCCTCACTGCCATCTGCCTGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAAAGCTGAGGTGGGGTaGCAGGCTTATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQKAEVG*QAYFWP
Trigger: AGGCCAGAAATAAGCCTGTCACCCCACCTCAGCTTT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACACTACCCTTCTCTCTaGGCCCGAGGAGCTGGTAGC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTHYPSL*ARGAGS
Trigger: GCTACCAGCTCCTCGGGCTCAGAGAGAAGGGTAGTG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGCTTGGGTTCCCCAGTaGCCTCACAGTCCAGGACAG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVAWVPQ*PHSPGQ
Trigger: CTGTCCTGGACTGTGAGGTCACTGGGGAACCCAAGC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGCTTGGGTTCCCCAGTaGCCTCACAGTCCAGGACAG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAAWVPQ*PHSPGQ
Trigger: CTGTCCTGGACTGTGAGGTCACTGGGGAACCCAAGC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCTCTCCTGTCCTCCTaGGCATGCTCCTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPLLSS*ACSWEG
Trigger: ACCTTCCCAGGAGCATGCTCAGGAGGACAGGAGAGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAGATCCTGGGGTTCATaGAAAGGGGACACTGCTGAG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQRSWGS*KGDTAE
Trigger: CTCAGCAGTGTCCCCTTTGCATGAACCCCAGGATCT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGCAGAGAGAGGGAGCTaGCTCCTGTGTTCCCTGAAT +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRAERGS*LLCSLN
Trigger: ATTCAGGGAACACAGGAGGCAGCTCCCTCTCTCTGC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCATGGCTCCCCCTGTTaGGGGGTGTGCACTTTGGGA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVHGSPC*GVCTLG
Trigger: TCCCAAAGTGCACACCCCGCAACAGGGGGAGCCATG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGCACTTCAGTGCCATTaGGCCGAGTGGCAGCCATTG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCALQCH*AEWQPL
Trigger: CAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGCCACACAGTGGAGCTaGATTGCCTCTCCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIATQWS*IASPVL
Trigger: GAGGACAGGAGAGGCAATGCAGCTCCACTGTGTGGC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTTGGGAGACAGCAGTaGAGTCTCAGTATGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQFGRQQ*SLSMLG
Trigger: CCCCAGCATACTGAGACTCCACTGCTGTCTCCCAAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGGAGAACACTGGGCTTaGGTTCTTCAAGTCCAGATC +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVGEHWA*VLQVQI
Trigger: GATCTGGACTTGAAGAACCCAAGCCCAGTGTTCTCC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCCATGTGATCTGGGGTaGTGGGACCCCATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCPCDLG*WDPICS
Trigger: AGAGCAGATGGGGTCCCACCACCCCAGATCACATGG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCCATGTGATCTGGGGTaGTGGGACCCCATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIPCDLG*WDPICS
Trigger: AGAGCAGATGGGGTCCCACCACCCCAGATCACATGG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCCCAAGGCCACACAGTaGAGCTGCATTGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCPKATQ*SCIASP
Trigger: AGGAGAGGCAATGCAGCTCCACTGTGTGGCCTTGGG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCTCCCAGGTGATTTGTaGCTTGGGGACTCCCAAGGC +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKILPGDL*LGDSQG
Trigger: GCCTTGGGAGTCCCCAAGCCACAAATCACCTGGGAG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCTCCCAGGTGATTTGTaGCTTGGGGACTCCCAAGGC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLPGDL*LGDSQG
Trigger: GCCTTGGGAGTCCCCAAGCCACAAATCACCTGGGAG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCAGGCAGATGGCAGTaGGGGAGATCAGCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPGRWQ*GRSASS
Trigger: GCTGCTTGCTGATCTCCCTCACTGCCATCTGCCTGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAACCGGGTCAAGCTCCTaGGTCCATACAAAGTATCCT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQTGSSS*VHTKYP
Trigger: AGGATACTTTGTATGGACTCAGGAGCTTGACCCGGT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCACGGTCCTGAATGCTaGCCCTCTGGATGGACAAGG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVHGPEC*PSGWTR
Trigger: CCTTGTCCATCCAGAGGGTCAGCATTCAGGACCGTG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACACGGTCCTGAATGCTaGCCCTCTGGATGGACAAGG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAHGPEC*PSGWTR
Trigger: CCTTGTCCATCCAGAGGGTCAGCATTCAGGACCGTG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCCGTAGTATGGAGCCGTaGGGAAAATATTGTCTGGCA +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVRSMEP*GKYCLA
Trigger: TGCCAGACAATATTTTCCTCACGGCTCCATACTACG...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCTCTCCTGTCCTCCTaGGCATGCTCCTGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPLLSS*ACSWEG
Trigger: ACCTTCCCAGGAGCATGCTCAGGAGGACAGGAGAGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCCACATTGGCTGGGATaGCGTCTGGGATGGAGGTCA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVPHWLG*RLGWRS
Trigger: TGACCTCCATCCCAGACGGCATCCCAGCCAATGTGG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCACATTGGCTGGGATaGCGTCTGGGATGGAGGTCA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPHWLG*RLGWRS
Trigger: TGACCTCCATCCCAGACGGCATCCCAGCCAATGTGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAAGATCCTGGGGTTCATaGAAAGGGGACACTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRRSWGS*KGDTAE
Trigger: CTCAGCAGTGTCCCCTTTGCATGAACCCCAGGATCT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGCAGAGAGAGGGAGCTaGCTCCTGTGTTCCCTGAAT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGAERGS*LLCSLN
Trigger: ATTCAGGGAACACAGGAGGCAGCTCCCTCTCTCTGC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGCACTTCAGTGCCATTaGGCCGAGTGGCAGCCATTG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTALQCH*AEWQPL
Trigger: CAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGGGCTGCTCTTTCCCTaGAGAGAGACTTCTGGCACC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTGLLFP*RETSGT
Trigger: GGTGCCAGAAGTCTCTCTGCAGGGAAAGAGCAGCCC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGGGCTGCTCTTTCCCTaGAGAGAGACTTCTGGCACC +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAGLLFP*RETSGT
Trigger: GGTGCCAGAAGTCTCTCTGCAGGGAAAGAGCAGCCC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGGGCAGTTCAGTTATaGCCAGGAGAGAAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGAVQL*PGEKLL
Trigger: CAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCACCTCTGTCCATTTCTaGGAGGCAGTTTCTATCCTG +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVTSVHF*EAVSIL
Trigger: CAGGATAGAAACTGCCTCGCAGAAATGGACAGAGGT...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGACATGGATCCGGCTaGCCATTCTGTGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGRHGSG*PFCATG
Trigger: ACCAGTGGCACAGAATGGGCAGCCGGATCCATGTCT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGCCACACAGTGGAGCTaGATTGCCTCTCCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVATQWS*IASPVL
Trigger: GAGGACAGGAGAGGCAATGCAGCTCCACTGTGTGGC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTCGTTCCACATTGGCTaGGATGCCGTCTGGGATGGA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCSFHIG*DAVWDG
Trigger: TCCATCCCAGACGGCATCCCAGCCAATGTGGAACGA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGTGCTGCCCAGTGTTaGGGGTCAATTCTCCGAGCA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKISAAQC*GSILRA
Trigger: TGCTCGGAGAATTGACCCCCAACACTGGGCAGCACT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGTCCTGATGAGACTCTaGTCCAGTGGATGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGVLMRL*SSGWWA
Trigger: AGCCCACCATCCACTGGACCAGAGTCTCATCAGGAC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAACCAACAGTGAATCCTaGCCAGATGGGTTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQTNSES*PDGLLA
Trigger: AGCCAACAACCCATCTGGCCAGGATTCACTGTTGGT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCAAAGGGGACACTGCTaGGGACTGGAGGGGATTCTT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVQRGHC*GLEGIL
Trigger: AAGAATCCCCTCCAGTCCTCAGCAGTGTCCCCTTTG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGGAAAAATCAGCCCCTaGTGGGTTGGCTGCTACACA +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKGKISP*WVGCYT
Trigger: TGTGTAGCAGCCAACCCATCAGGGGCTGATTTTTCC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGGTGAGGAGGAACCATaGTCTGTGGGTAAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRGEEEP*SVGKRG
Trigger: TCCTCTTTTACCCACAGATCATGGTTCCTCCTCACC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAAAGCTGAGGTGGGGTaGCAGGCTTATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIKAEVG*QAYFWP
Trigger: AGGCCAGAAATAAGCCTGTCACCCCACCTCAGCTTT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCACGGTCCTGAATGCTaGCCCTCTGGATGGACAAGG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHHGPEC*PSGWTR
Trigger: CCTTGTCCATCCAGAGGGTCAGCATTCAGGACCGTG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCTCCCCACTAGGATTTTaGGCTACACACACATACTTC +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVSPLGF*ATHTYF
Trigger: GAAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGA...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGCAGAGAGAGGGAGCTaGCTCCTGTGTTCCCTGAAT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVAERGS*LLCSLN
Trigger: ATTCAGGGAACACAGGAGGCAGCTCCCTCTCTCTGC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGTGGGTAGTAGTGTTTaGGGATTCACGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGVGSSV*GFTVEE
Trigger: CTCCTCCACCGTGAATCCGCAAACACTACTACCCAC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTCTGCATGCCTCTGTaGATTCCAATGCAAGGCATG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQFCMPL*IPMQGM
Trigger: CATGCCTTGCATTGGAATGCACAGAGGCATGCAGAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCGGCTGCCCATTCTGTaGCACTGGTCAATGACAACC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVRLPIL*HWSMTT
Trigger: GGTTGTCATTGACCAGTGGCACAGAATGGGCAGCCG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAACCAAGCACGTTCTGTaGTCTGCATTTATAGACGCC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQTKHVL*SAFIDA
Trigger: GGCGTCTATAAATGCAGAGCACAGAACGTGCTTGGT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGGATGCCGTCTGGGATaGAGGTCAGGTACCGAAATG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAGCRLG*RSGTEM
Trigger: CATTTCGGTACCTGACCTCCATCCCAGACGGCATCC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGGATGCCGTCTGGGATaGAGGTCAGGTACCGAAATG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVGCRLG*RSGTEM
Trigger: CATTTCGGTACCTGACCTCCATCCCAGACGGCATCC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATCGTTCCACATTGGCTaGGATGCCGTCTGGGATGGA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTASFHIG*DAVWDG
Trigger: TCCATCCCAGACGGCATCCCAGCCAATGTGGAACGA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTTGGGAGACAGCAGTaGAGTCTCAGTATGCTGGGG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCFGRQQ*SLSMLG
Trigger: CCCCAGCATACTGAGACTCCACTGCTGTCTCCCAAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGTGCTGCCCAGTGTTaGGGGTCAATTCTCCGAGCA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTASAAQC*GSILRA
Trigger: TGCTCGGAGAATTGACCCCCAACACTGGGCAGCACT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAAATCTGTTCCAGCTTaGATGGTCCTAGGCATGCTC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQKSVPA*MVLGML
Trigger: GAGCATGCCTAGGACCATCCAAGCTGGAACAGATTT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCTGGGGGTGATGGTTaGGCCTTTCCTGTTCTTCAG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPGGDG*AFPVLQ
Trigger: CTGAAGAACAGGAAAGGCCCAACCATCACCCCCAGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCCCACTGCTGAGGAGTaGTGGTGTGGCGGAGGCTCT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVPTAEE*WCGGGS
Trigger: AGAGCCTCCGCCACACCACCACTCCTCAGCAGTGGG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCCATCTTGAAAACTGCTaGGACCTCACTGTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVHLENC*DLTVCN
Trigger: GTTACAGACAGTGAGGTCCCAGCAGTTTTCAAGATG...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATGGTCCAGTGGATGGTaGGCTTTGGGTCTCCAACAG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTWSSGW*ALGLQQ
Trigger: CTGTTGGAGACCCAAAGCCCACCATCCACTGGACCA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACTCTGGTCCAGTGGATaGTGGGCTTTGGGTCTCCAA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLWSSG*WALGLQ
Trigger: TTGGAGACCCAAAGCCCACCATCCACTGGACCAGAG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGAGACTCTGGTCCAGTaGATGGTGGGCTTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAETLVQ*MVGFGS
Trigger: AGACCCAAAGCCCACCATCCACTGGACCAGAGTCTC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTGGACAAGGTGCCATTaGGAAGCACATGAAACCGGG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIWTRCH*EAHETG
Trigger: CCCGGTTTCATGTGCTTCCCAATGGCACCTTGTCCA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTGGACAAGGTGCCATTaGGAAGCACATGAAACCGGG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGWTRCH*EAHETG
Trigger: CCCGGTTTCATGTGCTTCCCAATGGCACCTTGTCCA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAACCAACAGTGAATCCTaGCCAGATGGGTTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRTNSES*PDGLLA
Trigger: AGCCAACAACCCATCTGGCCAGGATTCACTGTTGGT...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCATGTGATCTGGGGTaGTGGGACCCCATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPCDLG*WDPICS
Trigger: AGAGCAGATGGGGTCCCACCACCCCAGATCACATGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCTCTGCCTCCGTAGTATaGAGCCGTGAGGAAAATATT +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVSASVV*SREENI
Trigger: AATATTTTCCTCACGGCTCCATACTACGGAGGCAGA...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCCAAGGCCACACAGTaGAGCTGCATTGCCTCTCCT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPKATQ*SCIASP
Trigger: AGGAGAGGCAATGCAGCTCCACTGTGTGGCCTTGGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCTCCCAGGTGATTTGTaGCTTGGGGACTCCCAAGGC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLPGDL*LGDSQG
Trigger: GCCTTGGGAGTCCCCAAGCCACAAATCACCTGGGAG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCATCTCACTTCTGTaGGGCCTTCTTTCTGTCGCC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGSISLL*GLLSVA
Trigger: GGCGACAGAAAGAAGGCCCCACAGAAGTGAGATGCT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGATCAGCAAGCAGCTaGCTTCCCTGCCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARSASS*LPCLSS
Trigger: AGAAGAGAGGCAGGGAAGTCAGCTGCTTGCTGATCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGATCAGCAAGCAGCTaGCTTCCCTGCCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRSASS*LPCLSS
Trigger: AGAAGAGAGGCAGGGAAGTCAGCTGCTTGCTGATCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAAGAAGGTCTTGTCACTaGCTCTGTGAATGCCATTGC +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRRRSCH*LCECHC
Trigger: GCAATGGCATTCACAGAGTCAGTGACAAGACCTTCT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTACCGGGTCAAGCTCCTaGGTCCATACAAAGTATCCT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCTGSSS*VHTKYP
Trigger: AGGATACTTTGTATGGACTCAGGAGCTTGACCCGGT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCAAAGGGGACACTGCTaGGGACTGGAGGGGATTCTT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHQRGHC*GLEGIL
Trigger: AAGAATCCCCTCCAGTCCTCAGCAGTGTCCCCTTTG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGATCCATTGTCCTCCTaGATACCCAGGCTTTTTGAC +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRDPLSS*IPRLFD
Trigger: GTCAAAAAGCCTGGGTATTCAGGAGGACAATGGATC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGGTGAGGAGGAACCATaGTCTGTGGGTAAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIGEEEP*SVGKRG
Trigger: TCCTCTTTTACCCACAGATCATGGTTCCTCCTCACC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTACTTTTCCCGGGGAATaGCTGAAAGCCAAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCTFPGE*LKAKGV
Trigger: TACTCCCTTGGCTTTCAGTCATTCCCCGGGAAAAGT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTGCGGTGCTCTCCTGTaGTTTGCTCAACAGAGTTGT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKICGALL*FAQQSC
Trigger: ACAACTCTGTTGAGCAAATCACAGGAGAGCACCGCA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTGCGGTGCTCTCCTGTaGTTTGCTCAACAGAGTTGT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCCGALL*FAQQSC
Trigger: ACAACTCTGTTGAGCAAATCACAGGAGAGCACCGCA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAAAGCTGAGGTGGGGTaGCAGGCTTATTTCTGGCCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAKAEVG*QAYFWP
Trigger: AGGCCAGAAATAAGCCTGTCACCCCACCTCAGCTTT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGACCACAGACAGAGTaGCATGAAGGTGGTCTACAC +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRPQTE*HEGGLH
Trigger: GTGTAGACCACCTTCATGTCACTCTGTCTGTGGTCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCACTACCCTTCTCTCTaGGCCCGAGGAGCTGGTAGC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVHYPSL*ARGAGS
Trigger: GCTACCAGCTCCTCGGGCTCAGAGAGAAGGGTAGTG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGATCCTGGGGTTCATaGAAAGGGGACACTGCTGAG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRSWGS*KGDTAE
Trigger: CTCAGCAGTGTCCCCTTTGCATGAACCCCAGGATCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTGAAATCAGGAAGGTaGGTGGGTAGTAGTGTTTGC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQLKSGR*VGSSVC
Trigger: GCAAACACTACTACCCACGCACCTTCCTGATTTCAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAGCAGAAATCATGCTTaGTTCAGTGGGAGTCATGTG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQSRNHA*FSGSHV
Trigger: CACATGACTCCCACTGAAGCAAGCATGATTTCTGCT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGTGGCAGCCATTGTTaGAGACTGAGCTGGCGTCAG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHSGSHC*RLSWRQ
Trigger: CTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAACACTCTTTTCTGCATaGCTCTGTGCATTCCAATGC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQTLFSA*LCAFQC
Trigger: GCATTGGAATGCACAGAGGCATGCAGAAAAGAGTGT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCGGCTGCCCATTCTGTaGCACTGGTCAATGACAACC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHRLPIL*HWSMTT
Trigger: GGTTGTCATTGACCAGTGGCACAGAATGGGCAGCCG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGAGAGAACCATTGCTTaGCATCAGATATGGGGAATT +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVERTIA*HQIWGI
Trigger: AATTCCCCATATCTGATGGCAAGCAATGGTTCTCTC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCCATCAGACACACAATaGAGGGATAGCGATTCCCCA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCPSDTQ*RDSDSP
Trigger: TGGGGAATCGCTATCCCTGCATTGTGTGTCTGATGG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACACAGTGGAGCTGCATTaGCTCTCCTGTCCTCCTGAG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHTVELH*LSCPPE
Trigger: CTCAGGAGGACAGGAGAGGCAATGCAGCTCCACTGT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGACAACCACTTTAAATaGCAGTCACAGGTCCATGGG +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRDNHFK*QSQVHG
Trigger: CCCATGGACCTGTGACTGCCATTTAAAGTGGTTGTC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGGAGTCTCAGTATGCTaGGGCTTCCTTTCTAATATC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQGVSVC*GFLSNI
Trigger: GATATTAGAAAGGAAGCCCCAGCATACTGAGACTCC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGAGAACACTGGGCTTaGGTTCTTCAAGTCCAGATC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGEHWA*VLQVQI
Trigger: GATCTGGACTTGAAGAACCCAAGCCCAGTGTTCTCC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTGGGGAGGGTAGTGTaGGATGAGCCTGTAACTGAC +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTALGRVV*DEPVTD
Trigger: GTCAGTTACAGGCTCATCCCACACTACCCTCCCCAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTGGGGAGGGTAGTGTaGGATGAGCCTGTAACTGAC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLGRVV*DEPVTD
Trigger: GTCAGTTACAGGCTCATCCCACACTACCCTCCCCAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAGAGGGGAAAGTCAGTaGATCCAGTTAAGATCTCAG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQRGESQ*IQLRSQ
Trigger: CTGAGATCTTAACTGGATCCACTGACTTTCCCCTCT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTATCCACTCTTGGTGCTaGCATAGGAGTGGAGGTCAA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCIHSWC*HRSGGQ
Trigger: TTGACCTCCACTCCTATGCCAGCACCAAGAGTGGAT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTATCCACTCTTGGTGCTaGCATAGGAGTGGAGGTCAA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIIHSWC*HRSGGQ
Trigger: TTGACCTCCACTCCTATGCCAGCACCAAGAGTGGAT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACCATTGAGAATCCTGTaGTTTATCCACTCTTGGTGC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQPLRIL*FIHSWC
Trigger: GCACCAAGAGTGGATAAACCACAGGATTCTCAATGG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGGTCCAGTGGATGGTaGGCTTTGGGTCTCCAACAG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHWSSGW*ALGLQQ
Trigger: CTGTTGGAGACCCAAAGCCCACCATCCACTGGACCA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGTCCTGATGAGACTCTaGTCCAGTGGATGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHVLMRL*SSGWWA
Trigger: AGCCCACCATCCACTGGACCAGAGTCTCATCAGGAC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGGACAAGGTGCCATTaGGAAGCACATGAAACCGGG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAWTRCH*EAHETG
Trigger: CCCGGTTTCATGTGCTTCCCAATGGCACCTTGTCCA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGCCTTGCAGTCAACTTaGAAATCTTTCCCATGGAGT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQALQST*KSFPWS
Trigger: ACTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACAACCAAAATACATTTaGCTTGGGTTCCCCAGTGAC +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQQPKYI*LGFPSD
Trigger: GTCACTGGGGAACCCAAGCCAAATGTATTTTGGTTG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAACAGGCTTGCCAACCTaGGCAACTACTTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQTGLPT*ATTFSL
Trigger: CAATGAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGCATCTCACTTCTGTaGGGCCTTCTTTCTGTCGCC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSISLL*GLLSVA
Trigger: GGCGACAGAAAGAAGGCCCCACAGAAGTGAGATGCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACATTGCTGTGCAGCATaGGTAACTCCAGTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTHCCAA*VTPVCS
Trigger: TGAGCAGACTGGAGTTACTCATGCTGCACAGCAATG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGAAGGTCTTGTCACTaGCTCTGTGAATGCCATTGC +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRRSCH*LCECHC
Trigger: GCAATGGCATTCACAGAGTCAGTGACAAGACCTTCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGGTTCTATGAAATCTTaGGGTGAGACGGAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCGSMKS*GETEAD
Trigger: ATCTGCCTCCGTCTCACCTCAAGATTTCATAGAACC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGGAAAAATCAGCCCCTaGTGGGTTGGCTGCTACACA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHGKISP*WVGCYT
Trigger: TGTGTAGCAGCCAACCCATCAGGGGCTGATTTTTCC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTCTGTGCCAGAAGCTaGACTTGTCACAAAGCCATG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIFCARS*TCHKAM
Trigger: CATGGCTTTGTGACAAGTTCAGCTTCTGGCACAGAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTCTGTGCCAGAAGCTaGACTTGTCACAAAGCCATG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCFCARS*TCHKAM
Trigger: CATGGCTTTGTGACAAGTTCAGCTTCTGGCACAGAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGAGGGGGCTCCGTGGCTaGAACTTGACTTATATTTCT +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKRGLRG*NLTYIS
Trigger: AGAAATATAAGTCAAGTTTCAGCCACGGAGCCCCCT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGGGGGCTCCGTGGCTaGAACTTGACTTATATTTCT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRGLRG*NLTYIS
Trigger: AGAAATATAAGTCAAGTTTCAGCCACGGAGCCCCCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGATGCTTTTGTTGGTATTaGGGGTTGGCTAAGTGGACT +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRCFCWY*GLAKWT
Trigger: AGTCCACTTAGCCAACCCTCAATACCAACAAAAGCA...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGGTGAGGAGGAACCATaGTCTGTGGGTAAAAGAGGA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVGEEEP*SVGKRG
Trigger: TCCTCTTTTACCCACAGATCATGGTTCCTCCTCACC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCACTTTTCCCGGGGAATaGCTGAAAGCCAAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVTFPGE*LKAKGV
Trigger: TACTCCCTTGGCTTTCAGTCATTCCCCGGGAAAAGT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTGCGGTGCTCTCCTGTaGTTTGCTCAACAGAGTTGT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVCGALL*FAQQSC
Trigger: ACAACTCTGTTGAGCAAATCACAGGAGAGCACCGCA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGAGAAGGCTTCCATTaGGAATCCTGTGGTTTATCC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGEGFH*ESCGLS
Trigger: GGATAAACCACAGGATTCTCAATGGAAGCCTTCTCC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGACCACAGACAGAGTaGCATGAAGGTGGTCTACAC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRPQTE*HEGGLH
Trigger: GTGTAGACCACCTTCATGTCACTCTGTCTGTGGTCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCACAGTACTTCCGGAATaGGCTGTGATCTCCTTGACA +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGTVLPE*AVISLT
Trigger: TGTCAAGGAGATCACAGCTCATTCCGGAAGTACTGT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCGTAGTATGGAGCCGTaGGGAAAATATTGTCTGGCA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRSMEP*GKYCLA
Trigger: TGCCAGACAATATTTTCCTCACGGCTCCATACTACG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGTCCAAGGTTCCATTTTaGTGCACGGTGATTCTGCCT +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKSKVPF*CTVILP
Trigger: AGGCAGAATCACCGTGCATCAAAATGGAACCTTGGA...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTCCAAGGTTCCATTTTaGTGCACGGTGATTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGSKVPF*CTVILP
Trigger: AGGCAGAATCACCGTGCATCAAAATGGAACCTTGGA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTCCAAGGTTCCATTTTaGTGCACGGTGATTCTGCCT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKISKVPF*CTVILP
Trigger: AGGCAGAATCACCGTGCATCAAAATGGAACCTTGGA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCTCATTTTTAAGACCTaGAAGGACTGCAAGCCCGAG +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKLIFKT*KDCKPE
Trigger: CTCGGGCTTGCAGTCCTTGCAGGTCTTAAAAATGAG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCTCATTTTTAAGACCTaGAAGGACTGCAAGCCCGAG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLIFKT*KDCKPE
Trigger: CTCGGGCTTGCAGTCCTTGCAGGTCTTAAAAATGAG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTGGAGGAGACTTCTGTaGCAGAAGCTGAACTTGTCA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIWRRLL*QKLNLS
Trigger: TGACAAGTTCAGCTTCTGGCACAGAAGTCTCCTCCA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGTGGGTAGTAGTGTTTaGGGATTCACGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHVGSSV*GFTVEE
Trigger: CTCCTCCACCGTGAATCCGCAAACACTACTACCCAC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTACCTCTGTCCATTTCTaGGAGGCAGTTTCTATCCTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKITSVHF*EAVSIL
Trigger: CAGGATAGAAACTGCCTCGCAGAAATGGACAGAGGT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAACTGTCATCAGCTTGTaGTACATTGTTCACCACTGT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQTVISL*YIVHHC
Trigger: ACAGTGGTGAACAATGTAGCACAAGCTGATGACAGT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACCATCAGACACACAATaGAGGGATAGCGATTCCCCA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAPSDTQ*RDSDSP
Trigger: TGGGGAATCGCTATCCCTGCATTGTGTGTCTGATGG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGCCACACAGTGGAGCTaGATTGCCTCTCCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVATQWS*IASPVL
Trigger: GAGGACAGGAGAGGCAATGCAGCTCCACTGTGTGGC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAAGCACGTTCTGTaGTCTGCATTTATAGACGCC +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKTKHVL*SAFIDA
Trigger: GGCGTCTATAAATGCAGAGCACAGAACGTGCTTGGT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGAGACAAATGTGTCTaGATGGAGCTTTGTCAGCCG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRDKCV*MELCQP
Trigger: CGGCTGACAAAGCTCCATCCAGACACATTTGTCTCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGAGACAAATGTGTCTaGATGGAGCTTTGTCAGCCG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGRDKCV*MELCQP
Trigger: CGGCTGACAAAGCTCCATCCAGACACATTTGTCTCT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGGAGACCATTTCTTTTaGGAGGGAGGTCAGGAAGTT +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKGDHFF*EGGQEV
Trigger: AACTTCCTGACCTCCCTCCCAAAAGAAATGGTCTCC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGAGACCATTTCTTTTaGGAGGGAGGTCAGGAAGTT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGDHFF*EGGQEV
Trigger: AACTTCCTGACCTCCCTCCCAAAAGAAATGGTCTCC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGGAGACCATTTCTTTTaGGAGGGAGGTCAGGAAGTT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCGDHFF*EGGQEV
Trigger: AACTTCCTGACCTCCCTCCCAAAAGAAATGGTCTCC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGACAACCACTTTAAATaGCAGTCACAGGTCCATGGG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIDNHFK*QSQVHG
Trigger: CCCATGGACCTGTGACTGCCATTTAAAGTGGTTGTC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTTGGGAGACAGCAGTaGAGTCTCAGTATGCTGGGG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHFGRQQ*SLSMLG
Trigger: CCCCAGCATACTGAGACTCCACTGCTGTCTCCCAAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAAAGGTATCAGCCATCTaGAGTTCCAACTTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRKVSAI*SSNFPF
Trigger: AAAGGGGAAGTTGGAACTCCAGATGGCTGATACCTT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCACCAGTGGAAAGGCATaGAAGATCGAGTATCTCACC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGTSGKA*KIEYLT
Trigger: GGTGAGATACTCGATCTTCCATGCCTTTCCACTGGT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGCGTTGGCTTTACTGTaGTATTTTCTTGCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVALALL*YFLASL
Trigger: TAAGGAAGCAAGAAAATACCACAGTAAAGCCAACGC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAATAAAGAAGGGGCAGTaGTGTGGGAATCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTIKKGQ*CGNLKG
Trigger: GCCCTTCAGATTCCCACACCACTGCCCCTTCTTTAT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGACAGGGATATGGATGTTaGAGCAGAAATCATGCTTGC +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRQGYGC*SRNHAC
Trigger: GCAAGCATGATTTCTGCTCCAACATCCATATCCCTG...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGACCATTGAGAATCCTGTaGTTTATCCACTCTTGGTGC +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRPLRIL*FIHSWC
Trigger: GCACCAAGAGTGGATAAACCACAGGATTCTCAATGG...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCATAGGGCAGGTGTTTaGAAGTTGGGTTTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCHRAGV*KLGFEQ
Trigger: CTGCTCAAAACCCAACTTCCAAACACCTGCCCTATG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGAGGGTGTACCTCTTaGTCCTGTAGCCACTGTCAT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRGCTS*SCSHCH
Trigger: ATGACAGTGGCTACAGGACCAAGAGGTACACCCTCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTACAAGGTTCCGTTGTaGAAGAGGGTGTACCTCTTG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCYKVPL*KRVYLL
Trigger: CAAGAGGTACACCCTCTTCCACAACGGAACCTTGTA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
3UTR CAA 72 bp AAAAGTAGAGGGAGACTACTCTACGGTGGGTATCATTaGACCTCTGGCAGCCATAGAGTACCAATGTTAACT +
Preference number: 4 (lower is better)
Translates to: KSRGRLLYGGYH*TSGSHRVPMLT
Trigger: AGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACCGTAGAGTAGTCTCCCTCTACTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCATTGCTGTGCAGCATaGGTAACTCCAGTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHHCCAA*VTPVCS
Trigger: TGAGCAGACTGGAGTTACTCATGCTGCACAGCAATG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGAAGGTCTTGTCACTaGCTCTGTGAATGCCATTGC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVRRSCH*LCECHC
Trigger: GCAATGGCATTCACAGAGTCAGTGACAAGACCTTCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACACCGGGTCAAGCTCCTaGGTCCATACAAAGTATCCT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHTGSSS*VHTKYP
Trigger: AGGATACTTTGTATGGACTCAGGAGCTTGACCCGGT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGGTTCTATGAAATCTTaGGGTGAGACGGAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAGSMKS*GETEAD
Trigger: ATCTGCCTCCGTCTCACCTCAAGATTTCATAGAACC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCCAAAAGGTTCTATaGAATCTTGAGGTGAGACGG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGSQKVL*NLEVRR
Trigger: CCGTCTCACCTCAAGATTTCATAGAACCTTTTGGCT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAAAAAGGATCTGCTTTaGAATCAGCCTCTATGTTGG +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQKKDLL*NQPLCW
Trigger: CCAACATAGAGGCTGATTTCAAAGCAGATCCTTTTT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACAGTTATCCTGTATGTaGGAATATCTGCATCAGCAT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQQLSCM*EYLHQH
Trigger: ATGCTGATGCAGATATTCTCACATACAGGATAACTG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTTCTGTGCCAGAAGCTaGACTTGTCACAAAGCCATG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVFCARS*TCHKAM
Trigger: CATGGCTTTGTGACAAGTTCAGCTTCTGGCACAGAA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGGGGGCTCCGTGGCTaGAACTTGACTTATATTTCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARGLRG*NLTYIS
Trigger: AGAAATATAAGTCAAGTTTCAGCCACGGAGCCCCCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTGCTTTTGTTGGTATTaGGGGTTGGCTAAGTGGACT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKICFCWY*GLAKWT
Trigger: AGTCCACTTAGCCAACCCTCAATACCAACAAAAGCA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGGAGAAGGCTTCCATTaGGAATCCTGTGGTTTATCC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTGEGFH*ESCGLS
Trigger: GGATAAACCACAGGATTCTCAATGGAAGCCTTCTCC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGAGTATGACCTGAGCTaGAATTTGTTTTCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGEYDLS*NLFSGQ
Trigger: CTGGCCAGAAAACAAATTTCAGCTCAGGTCATACTC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCATTGGGAAGCACATaGAACCGGGTTTTCTGTATC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPLGST*NRVFCI
Trigger: GATACAGAAAACCCGGTTTCATGTGCTTCCCAATGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAACAGTACTTCCGGAATaGGCTGTGATCTCCTTGACA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTTVLPE*AVISLT
Trigger: TGTCAAGGAGATCACAGCTCATTCCGGAAGTACTGT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGACTCAAATTATGGATaGTCAACGTTCCATCGGGTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIDSNYG*STFHRV
Trigger: CACCCGATGGAACGTTGATCATCCATAATTTGAGTC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGACTCAAATTATGGATaGTCAACGTTCCATCGGGTG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGDSNYG*STFHRV
Trigger: CACCCGATGGAACGTTGATCATCCATAATTTGAGTC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGCGGTTTCACTTTATTaGTGGACAAAGTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRAVSLY*WTKFHW
Trigger: CCAATGGAACTTTGTCCATCAATAAAGTGAAACCGC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTCCCCACTAGGATTTTaGGCTACACACACATACTTC +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKISPLGF*ATHTYF
Trigger: GAAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACGTAGTATGGAGCCGTaGGGAAAATATTGTCTGGCA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARSMEP*GKYCLA
Trigger: TGCCAGACAATATTTTCCTCACGGCTCCATACTACG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGTGGAGTCTCAGTATaGTGGGGCTTCCTTTCTAAT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGSGVSV*WGFLSN
Trigger: ATTAGAAAGGAAGCCCCAGCATACTGAGACTCCACT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACATCATTGGTGCTTATaGAATGGTAAAGACCTGCAT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQHHWCL*NGKDLH
Trigger: ATGCAGGTCTTTACCATTGCATAAGCACCAATGATG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATGGAGGAGACTTCTGTaGCAGAAGCTGAACTTGTCA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTWRRLL*QKLNLS
Trigger: TGACAAGTTCAGCTTCTGGCACAGAAGTCTCCTCCA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTGAAATCAGGAAGGTaGGTGGGTAGTAGTGTTTGC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLKSGR*VGSSVC
Trigger: GCAAACACTACTACCCACGCACCTTCCTGATTTCAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAACAATCCTGTGTCTATaGCGACGGAGAACTGGAGTT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTTILCL*RRRTGV
Trigger: AACTCCAGTTCTCCGTCGGCATAGACACAGGATTGT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAACAATCCTGTGTCTATaGCGACGGAGAACTGGAGTT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTATILCL*RRRTGV
Trigger: AACTCCAGTTCTCCGTCGGCATAGACACAGGATTGT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGCAGAAATCATGCTTaGTTCAGTGGGAGTCATGTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKISRNHA*FSGSHV
Trigger: CACATGACTCCCACTGAAGCAAGCATGATTTCTGCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTGGAGCAGAAATCATaGTTGCTTCAGTGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKILEQKS*LLQWES
Trigger: TGACTCCCACTGAAGCAAGCATGATTTCTGCTCCAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAGTGGCAGCCATTGTTaGAGACTGAGCTGGCGTCAG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVSGSHC*RLSWRQ
Trigger: CTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGGGGCAGTTCAGTTATaGCCAGGAGAGAAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVGAVQL*PGEKLL
Trigger: CAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTTCCCGAAGTATGAGTaGATTTCTGGGGCAGTTCAG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVFPKYE*ISGAVQ
Trigger: CTGAACTGCCCCAGAAATGCACTCATACTTCGGGAA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTGCTCTCCTGTGATTTaGTCAACAGAGTTGTTTCCG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGCSPVI*STELFP
Trigger: CGGAAACAACTCTGTTGAGCAAATCACAGGAGAGCA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTCTGCATGCCTCTGTaGATTCCAATGCAAGGCATG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTFCMPL*IPMQGM
Trigger: CATGCCTTGCATTGGAATGCACAGAGGCATGCAGAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAGACATGGATCCGGCTaGCCATTCTGTGCCACTGGT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVRHGSG*PFCATG
Trigger: ACCAGTGGCACAGAATGGGCAGCCGGATCCATGTCT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAATAATCTCCTTCCTCTaGCATCCCAACTTTGTTGAA +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQIISFL*HPNFVE
Trigger: TTCAACAAAGTTGGGATGGCAGAGGAAGGAGATTAT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGGATGCCGTCTGGGATaGAGGTCAGGTACCGAAATG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVGCRLG*RSGTEM
Trigger: CATTTCGGTACCTGACCTCCATCCCAGACGGCATCC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGACAACCACTTTAAATaGCAGTCACAGGTCCATGGG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVDNHFK*QSQVHG
Trigger: CCCATGGACCTGTGACTGCCATTTAAAGTGGTTGTC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCAGGAACGAGCCAGATaGAACCATAGCAATAGATCT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGQERAR*NHSNRS
Trigger: AGATCTATTGCTATGGTTCCATCTGGCTCGTTCCTG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGACAGGAGTTGCCACACTaGCTGGATGTGATTATAATT +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRQELPH*LDVIII
Trigger: AATTATAATCACATCCAGCCAGTGTGGCAACTCCTG...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGAGTCTCAGTATGCTaGGGCTTCCTTTCTAATATC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGVSVC*GFLSNI
Trigger: GATATTAGAAAGGAAGCCCCAGCATACTGAGACTCC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGATCATCATCAGAATCATaGTCCATTTGCGTTTCACCG +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRSSSES*SICVSP
Trigger: CGGTGAAACGCAAATGGACCATGATTCTGATGATGA...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAAGGTATCAGCCATCTaGAGTTCCAACTTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCKVSAI*SSNFPF
Trigger: AAAGGGGAAGTTGGAACTCCAGATGGCTGATACCTT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACTGCATCAGCATCATTaGTGCTTATGCAATGGTAAA +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQLHQHH*CLCNGK
Trigger: TTTACCATTGCATAAGCACCAATGATGCTGATGCAG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAACCAGTGGAAAGGCATaGAAGATCGAGTATCTCACC +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTATSGKA*KIEYLT
Trigger: GGTGAGATACTCGATCTTCCATGCCTTTCCACTGGT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCACCAGTGGAAAGGCATaGAAGATCGAGTATCTCACC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVTSGKA*KIEYLT
Trigger: GGTGAGATACTCGATCTTCCATGCCTTTCCACTGGT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACATAAAGAAGGGGCAGTaGTGTGGGAATCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHIKKGQ*CGNLKG
Trigger: GCCCTTCAGATTCCCACACCACTGCCCCTTCTTTAT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCAGGGATATGGATGTTaGAGCAGAAATCATGCTTGC +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCQGYGC*SRNHAC
Trigger: GCAAGCATGATTTCTGCTCCAACATCCATATCCCTG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAAATCTGTTCCAGCTTaGATGGTCCTAGGCATGCTC +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAKSVPA*MVLGML
Trigger: GAGCATGCCTAGGACCATCCAAGCTGGAACAGATTT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCATCCCCTCTTTGTTATaGTTATTTGCAAAGATTGGG +
Preference number: 4 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVIPSLL*LFAKIG
Trigger: CCCAATCTTTGCAAATAACCATAACAAAGAGGGGAT...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGAGGGGAAAGTCAGTaGATCCAGTTAAGATCTCAG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRGESQ*IQLRSQ
Trigger: CTGAGATCTTAACTGGATCCACTGACTTTCCCCTCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACATCCACTCTTGGTGCTaGCATAGGAGTGGAGGTCAA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHIHSWC*HRSGGQ
Trigger: TTGACCTCCACTCCTATGCCAGCACCAAGAGTGGAT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACATAGGGCAGGTGTTTaGAAGTTGGGTTTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTHRAGV*KLGFEQ
Trigger: CTGCTCAAAACCCAACTTCCAAACACCTGCCCTATG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCTCTGGTCCAGTGGATaGTGGGCTTTGGGTCTCCAA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVLWSSG*WALGLQ
Trigger: TTGGAGACCCAAAGCCCACCATCCACTGGACCAGAG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGAGACTCTGGTCCAGTaGATGGTGGGCTTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVETLVQ*MVGFGS
Trigger: AGACCCAAAGCCCACCATCCACTGGACCAGAGTCTC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGTCCTGATGAGACTCTaGTCCAGTGGATGGTGGGCT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVVLMRL*SSGWWA
Trigger: AGCCCACCATCCACTGGACCAGAGTCTCATCAGGAC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACACCAACAGTGAATCCTaGCCAGATGGGTTGTTGGCT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHTNSES*PDGLLA
Trigger: AGCCAACAACCCATCTGGCCAGGATTCACTGTTGGT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGGCAGTTTCTATCCTaGGAACTGTCTCTTGCTCTT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIRQFLS*ELSLAL
Trigger: AAGAGCAAGAGACAGTTCCCAGGATAGAAACTGCCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGCCTTGCAGTCAACTTaGAAATCTTTCCCATGGAGT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIALQST*KSFPWS
Trigger: ACTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTACAAGGTTCCGTTGTaGAAGAGGGTGTACCTCTTG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVYKVPL*KRVYLL
Trigger: CAAGAGGTACACCCTCTTCCACAACGGAACCTTGTA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCAACCAAAATACATTTaGCTTGGGTTCCCCAGTGAC +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKQPKYI*LGFPSD
Trigger: GTCACTGGGGAACCCAAGCCAAATGTATTTTGGTTG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTCTGCCTCCGTAGTATaGAGCCGTGAGGAAAATATT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGSASVV*SREENI
Trigger: AATATTTTCCTCACGGCTCCATACTACGGAGGCAGA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTACAGGCTTGCCAACCTaGGCAACTACTTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKITGLPT*ATTFSL
Trigger: CAATGAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGATCCATTGTCCTCCTaGATACCCAGGCTTTTTGAC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHDPLSS*IPRLFD
Trigger: GTCAAAAAGCCTGGGTATTCAGGAGGACAATGGATC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGGTTCTATGAAATCTTaGGGTGAGACGGAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHGSMKS*GETEAD
Trigger: ATCTGCCTCCGTCTCACCTCAAGATTTCATAGAACC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGCCAAAAGGTTCTATaGAATCTTGAGGTGAGACGG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTASQKVL*NLEVRR
Trigger: CCGTCTCACCTCAAGATTTCATAGAACCTTTTGGCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGCCAAAAGGTTCTATaGAATCTTGAGGTGAGACGG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTSQKVL*NLEVRR
Trigger: CCGTCTCACCTCAAGATTTCATAGAACCTTTTGGCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGGAAAAATCAGCCCCTaGTGGGTTGGCTGCTACACA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVGKISP*WVGCYT
Trigger: TGTGTAGCAGCCAACCCATCAGGGGCTGATTTTTCC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGGATCTTTAGTAGTGTaGGCCAAGGAGTTATTACTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIGSLVV*AKELLL
Trigger: CAGTAATAACTCCTTGGCTCACACTACTAAAGATCC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGGATCTTTAGTAGTGTaGGCCAAGGAGTTATTACTG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCGSLVV*AKELLL
Trigger: CAGTAATAACTCCTTGGCTCACACTACTAAAGATCC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTATTTGACATCATCTTaGAAACTGCTGGGACCTCAC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGYLTSS*KLLGPH
Trigger: GTGAGGTCCCAGCAGTTTTCAAGATGATGTCAAATA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGTGACCATCCTATTTaGCATCATCTTGAAAACTGC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGDHPI*HHLENC
Trigger: GCAGTTTTCAAGATGATGTCAAATAGGATGGTCACC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGGTGACCATCCTATTTaGCATCATCTTGAAAACTGC +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCGDHPI*HHLENC
Trigger: GCAGTTTTCAAGATGATGTCAAATAGGATGGTCACC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGGTGACCATCCTATTTaGCATCATCTTGAAAACTGC +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIGDHPI*HHLENC
Trigger: GCAGTTTTCAAGATGATGTCAAATAGGATGGTCACC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGAGTATGACCTGAGCTaGAATTTGTTTTCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAEYDLS*NLFSGQ
Trigger: CTGGCCAGAAAACAAATTTCAGCTCAGGTCATACTC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGAGTATGACCTGAGCTaGAATTTGTTTTCTGGCCAG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVEYDLS*NLFSGQ
Trigger: CTGGCCAGAAAACAAATTTCAGCTCAGGTCATACTC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCATTGGGAAGCACATaGAACCGGGTTTTCTGTATC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPLGST*NRVFCI
Trigger: GATACAGAAAACCCGGTTTCATGTGCTTCCCAATGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACACAGTACTTCCGGAATaGGCTGTGATCTCCTTGACA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHTVLPE*AVISLT
Trigger: TGTCAAGGAGATCACAGCTCATTCCGGAAGTACTGT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGACTCAAATTATGGATaGTCAACGTTCCATCGGGTG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTADSNYG*STFHRV
Trigger: CACCCGATGGAACGTTGATCATCCATAATTTGAGTC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAAAGAAAAACCTGGAATaGGTCAACTGCAGTGGTTTT +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRKKNLE*VNCSGF
Trigger: AAAACCACTGCAGTTGACTCATTCCAGGTTTTTCTT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCATTGGAGAATGAAATaGCATTGTTGGAAGGCAGCA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCHWRMK*HCWKAA
Trigger: TGCTGCCTTCCAACAATGTCATTTCATTCTCCAATG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCATTGGAGAATGAAATaGCATTGTTGGAAGGCAGCA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIHWRMK*HCWKAA
Trigger: TGCTGCCTTCCAACAATGTCATTTCATTCTCCAATG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGCGGTTTCACTTTATTaGTGGACAAAGTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCAVSLY*WTKFHW
Trigger: CCAATGGAACTTTGTCCATCAATAAAGTGAAACCGC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGCGGTTTCACTTTATTaGTGGACAAAGTTCCATTGG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIAVSLY*WTKFHW
Trigger: CCAATGGAACTTTGTCCATCAATAAAGTGAAACCGC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATCCCCACTAGGATTTTaGGCTACACACACATACTTC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTSPLGF*ATHTYF
Trigger: GAAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGTTCGTATGTCAGAATaGCTGGCTTCTGTCCAATTT +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKVRMSE*LASVQF
Trigger: AAATTGGACAGAAGCCAGTCATTCTGACATACGAAC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGTTCGTATGTCAGAATaGCTGGCTTCTGTCCAATTT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCVRMSE*LASVQF
Trigger: AAATTGGACAGAAGCCAGTCATTCTGACATACGAAC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGTGGAGTCTCAGTATaGTGGGGCTTCCTTTCTAAT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSGVSV*WGFLSN
Trigger: ATTAGAAAGGAAGCCCCAGCATACTGAGACTCCACT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGTGGAGTCTCAGTATaGTGGGGCTTCCTTTCTAAT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTSGVSV*WGFLSN
Trigger: ATTAGAAAGGAAGCCCCAGCATACTGAGACTCCACT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGACATCAGCATCATTGGTaGTTATGCAATGGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRHQHHW*LCNGKD
Trigger: GTCTTTACCATTGCATAAGCACCAATGATGCTGATG...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCCCATAATTACTGTGTaGAGAGCTCCATTTTCATGC +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKPIITV*RAPFSC
Trigger: GCATGAAAATGGAGCTCTGCACACAGTAATTATGGG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGTGGGTAGTAGTGTTTaGGGATTCACGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVVGSSV*GFTVEE
Trigger: CTCCTCCACCGTGAATCCGCAAACACTACTACCCAC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTGAAATCAGGAAGGTaGGTGGGTAGTAGTGTTTGC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLKSGR*VGSSVC
Trigger: GCAAACACTACTACCCACGCACCTTCCTGATTTCAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTGGAGCAGAAATCATaGTTGCTTCAGTGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLEQKS*LLQWES
Trigger: TGACTCCCACTGAAGCAAGCATGATTTCTGCTCCAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTCCCGAAGTATGAGTaGATTTCTGGGGCAGTTCAG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHFPKYE*ISGAVQ
Trigger: CTGAACTGCCCCAGAAATGCACTCATACTTCGGGAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTCTGCATGCCTCTGTaGATTCCAATGCAAGGCATG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHFCMPL*IPMQGM
Trigger: CATGCCTTGCATTGGAATGCACAGAGGCATGCAGAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAATGGCTTGTCTCTTTTaGTCTATAATAACAGGGGGA +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRMACLF*SIITGG
Trigger: TCCCCCTGTTATTATAGAGCAAAAGAGACAAGCCAT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCTGGGAACTGTCTCTTaGTCTTCTACTCTTAGAATC +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLGTVS*SSTLRI
Trigger: GATTCTAAGAGTAGAAGAGCAAGAGACAGTTCCCAG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTACTGTCATCAGCTTGTaGTACATTGTTCACCACTGT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKITVISL*YIVHHC
Trigger: ACAGTGGTGAACAATGTAGCACAAGCTGATGACAGT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGAGAGAACCATTGCTTaGCATCAGATATGGGGAATT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGERTIA*HQIWGI
Trigger: AATTCCCCATATCTGATGGCAAGCAATGGTTCTCTC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGCCAACCTTATTTCTTaGTGTACAGCGATACTTTCC +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIANLIS*CTAILS
Trigger: GGAAAGTATCGCTGTACAGCAAGAAATAAGGTTGGC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGCCAACCTTATTTCTTaGTGTACAGCGATACTTTCC +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCANLIS*CTAILS
Trigger: GGAAAGTATCGCTGTACAGCAAGAAATAAGGTTGGC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACAGGAACGAGCCAGATaGAACCATAGCAATAGATCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAQERAR*NHSNRS
Trigger: AGATCTATTGCTATGGTTCCATCTGGCTCGTTCCTG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCAGGAGTTGCCACACTaGCTGGATGTGATTATAATT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGQELPH*LDVIII
Trigger: AATTATAATCACATCCAGCCAGTGTGGCAACTCCTG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCAGGAGTTGCCACACTaGCTGGATGTGATTATAATT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIQELPH*LDVIII
Trigger: AATTATAATCACATCCAGCCAGTGTGGCAACTCCTG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGGAGTCTCAGTATGCTaGGGCTTCCTTTCTAATATC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVGVSVC*GFLSNI
Trigger: GATATTAGAAAGGAAGCCCCAGCATACTGAGACTCC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTCATCATCAGAATCATaGTCCATTTGCGTTTCACCG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGSSSES*SICVSP
Trigger: CGGTGAAACGCAAATGGACCATGATTCTGATGATGA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAAGGTATCAGCCATCTaGAGTTCCAACTTCCCCTTT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAKVSAI*SSNFPF
Trigger: AAAGGGGAAGTTGGAACTCCAGATGGCTGATACCTT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCATCTGGAATACCAGTaGAAAGGCATGGAAGATCGA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVHLEYQ*KGMEDR
Trigger: TCGATCTTCCATGCCTTTCCACTGGTATTCCAGATG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGAGTTTCAAAGATGGTaGCTGCTTAAGGAGAACACT +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKEFQRW*LLKENT
Trigger: AGTGTTCTCCTTAAGCAGCCACCATCTTTGAAACTC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTTGGGGAGGGTAGTGTaGGATGAGCCTGTAACTGAC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVLGRVV*DEPVTD
Trigger: GTCAGTTACAGGCTCATCCCACACTACCCTCCCCAA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTCAGTGGGAGTCATGTaGGTACTTTCACTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKISVGVM*VLSLLK
Trigger: TTTCAGAAGTGAAAGTACCCACATGACTCCCACTGA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAAGGAACCATGATCTGTaGGTAAAAGAGGAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRRNHDL*VKEELF
Trigger: AAAAAGCTCCTCTTTTACCCACAGATCATGGTTCCT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGATTGGATCGTACTTCTTaGGTTTCAGAGATAATGGCA +
Preference number: 4 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRLDRTS*VSEIMA
Trigger: TGCCATTATCTCTGAAACCCAAGAAGTACGATCCAA...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGAGGGGAAAGTCAGTaGATCCAGTTAAGATCTCAG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARGESQ*IQLRSQ
Trigger: CTGAGATCTTAACTGGATCCACTGACTTTCCCCTCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCAGGTGTTTGGAAGTTaGGTTTTGAGCAGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIQVFGS*VLSRFL
Trigger: AAGAAACCTGCTCAAAACCCAACTTCCAAACACCTG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCATAGGGCAGGTGTTTaGAAGTTGGGTTTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHHRAGV*KLGFEQ
Trigger: CTGCTCAAAACCCAACTTCCAAACACCTGCCCTATG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGGCAGTTTCTATCCTaGGAACTGTCTCTTGCTCTT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRQFLS*ELSLAL
Trigger: AAGAGCAAGAGACAGTTCCCAGGATAGAAACTGCCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGGCAGTTTCTATCCTaGGAACTGTCTCTTGCTCTT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARQFLS*ELSLAL
Trigger: AAGAGCAAGAGACAGTTCCCAGGATAGAAACTGCCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCCATTCTGTGCCACTaGTCAATGACAACCTTGGAT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPILCH*SMTTLD
Trigger: ATCCAAGGTTGTCATTGACCAGTGGCACAGAATGGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGCTTGTGTTCAATTTTaGCAGGTGTCAGTCTTAGGC +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVACVQF*QVSVLG
Trigger: GCCTAAGACTGACACCTGCCAAAATTGAACACAAGC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTACAAGGTTCCGTTGTaGAAGAGGGTGTACCTCTTG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHYKVPL*KRVYLL
Trigger: CAAGAGGTACACCCTCTTCCACAACGGAACCTTGTA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATCTGCCTCCGTAGTATaGAGCCGTGAGGAAAATATT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTASASVV*SREENI
Trigger: AATATTTTCCTCACGGCTCCATACTACGGAGGCAGA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGATAATTTCAGGTGTTaGGTTCCCATCCACAGAGCA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTADNFRC*VPIHRA
Trigger: TGCTCTGTGGATGGGAACCCAACACCTGAAATTATC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAATATGGGGAATTTTGTaGCCCATTAGCAAATTGTGT +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQIWGIL*PISKLC
Trigger: ACACAATTTGCTAATGGGCCACAAAATTCCCCATAT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGCTTGCCATCAGATATaGGGAATTTTGTGGCCCATT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTACHQI*GILWPI
Trigger: AATGGGCCACAAAATTCCCCATATCTGATGGCAAGC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGCTTGCCATCAGATATaGGGAATTTTGTGGCCCATT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVACHQI*GILWPI
Trigger: AATGGGCCACAAAATTCCCCATATCTGATGGCAAGC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCATTGCTGTGCAGCATaGGTAACTCCAGTCTGCTCA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVHCCAA*VTPVCS
Trigger: TGAGCAGACTGGAGTTACTCATGCTGCACAGCAATG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCAGTTATCCTGTATGTaGGAATATCTGCATCAGCAT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCQLSCM*EYLHQH
Trigger: ATGCTGATGCAGATATTCTCACATACAGGATAACTG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTGCTCAATTGTCCTTTaGCCTTTCATTTGGACTGAA +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGCSIVL*PFIWTE
Trigger: TTCAGTCCAAATGAAAGGTCAAAGGACAATTGAGCA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGGATCTTTAGTAGTGTaGGCCAAGGAGTTATTACTG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVGSLVV*AKELLL
Trigger: CAGTAATAACTCCTTGGCTCACACTACTAAAGATCC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTGTTTCTAGGAGTTTaGAATAAAGAAGGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKILFLGV*NKEGAV
Trigger: CACTGCCCCTTCTTTATTTCAAACTCCTAGAAACAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAAGTGGTAGACTCTTCTaGAATAATCCCAACATTGTT +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRSGRLF*NNPNIV
Trigger: AACAATGTTGGGATTATTTCAGAAGAGTCTACCACT...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTGGAAGTTGGGTTTTaGGCAGGTTTCTTATCAAAG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKILEVGF*AGFLSK
Trigger: CTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAGACCACAGACAGAGTaGCATGAAGGTGGTCTACAC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVRPQTE*HEGGLH
Trigger: GTGTAGACCACCTTCATGTCACTCTGTCTGTGGTCT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTATAAGTGCCCCTGACTaGAGAAACGATGTTTCTTAT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIISAPD*RNDVSY
Trigger: ATAAGAAACATCGTTTCTTCAGTCAGGGGCACTTAT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTATAAGTGCCCCTGACTaGAGAAACGATGTTTCTTAT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCISAPD*RNDVSY
Trigger: ATAAGAAACATCGTTTCTTCAGTCAGGGGCACTTAT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCATTGGCATGAAATATaGACCTGTCATTGGAGAATG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGHWHEI*TCHWRM
Trigger: CATTCTCCAATGACAGGTTCATATTTCATGCCAATG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGTTCGTATGTCAGAATaGCTGGCTTCTGTCCAATTT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVVRMSE*LASVQF
Trigger: AAATTGGACAGAAGCCAGTCATTCTGACATACGAAC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGAACCAAAAAGGATCTaGTTTGAAATCAGCCTCTAT +
Preference number: 4 (lower is better)
Translates to: CRTLSFAGWVADRKLKTREPKRI*FEISLY
Trigger: ATAGAGGCTGATTTCAAAGCAGATCCTTTTTGGTTC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGTATGTGAGAATATCTaGATCAGCATCATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCVCENI*ISIIGA
Trigger: AGCACCAATGATGCTGATGCAGATATTCTCACATAC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCCATAATTACTGTGTaGAGAGCTCCATTTTCATGC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPIITV*RAPFSC
Trigger: GCATGAAAATGGAGCTCTGCACACAGTAATTATGGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGCAGAAATCATGCTTaGTTCAGTGGGAGTCATGTG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHSRNHA*FSGSHV
Trigger: CACATGACTCCCACTGAAGCAAGCATGATTTCTGCT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTGGAGCAGAAATCATaGTTGCTTCAGTGGGAGTCA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLEQKS*LLQWES
Trigger: TGACTCCCACTGAAGCAAGCATGATTTCTGCTCCAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTTGTTATGGTTATTTaGAAAGATTGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCFVMVI*KDWVPG
Trigger: CCCTGGCACCCAATCTTTGCAAATAACCATAACAAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGAGAGATAATGGCAGATaGAATAACAGGAGGAGTTGT +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKRDNGR*NNRRSC
Trigger: ACAACTCCTCCTGTTATTGCATCTGCCATTATCTCT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCTCTCCTGTGATTTaGTCAACAGAGTTGTTTCCG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHCSPVI*STELFP
Trigger: CGGAAACAACTCTGTTGAGCAAATCACAGGAGAGCA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAAAGACACTCTTTTCTaGATGCCTCTGTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVKDTLF*MPLCIP
Trigger: TGGAATGCACAGAGGCATGCAGAAAAGAGTGTCTTT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAAAGACACTCTTTTCTaGATGCCTCTGTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTKDTLF*MPLCIP
Trigger: TGGAATGCACAGAGGCATGCAGAAAAGAGTGTCTTT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCATGGCTTGTCTCTTTTaGTCTATAATAACAGGGGGA +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGMACLF*SIITGG
Trigger: TCCCCCTGTTATTATAGAGCAAAAGAGACAAGCCAT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACTGGGAACTGTCTCTTaGTCTTCTACTCTTAGAATC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLGTVS*SSTLRI
Trigger: GATTCTAAGAGTAGAAGAGCAAGAGACAGTTCCCAG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCACTGTCATCAGCTTGTaGTACATTGTTCACCACTGT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVTVISL*YIVHHC
Trigger: ACAGTGGTGAACAATGTAGCACAAGCTGATGACAGT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCATAATCTCCTTCCTCTaGCATCCCAACTTTGTTGAA +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGIISFL*HPNFVE
Trigger: TTCAACAAAGTTGGGATGGCAGAGGAAGGAGATTAT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCCATCAGACACACAATaGAGGGATAGCGATTCCCCA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVPSDTQ*RDSDSP
Trigger: TGGGGAATCGCTATCCCTGCATTGTGTGTCTGATGG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGCATCCGTGGAAAATTaGATCTGTAATGTGCTAAGT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGASVEN*ICNVLS
Trigger: ACTTAGCACATTACAGATCCAATTTTCCACGGATGC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTCATCATCAGAATCATaGTCCATTTGCGTTTCACCG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSSSES*SICVSP
Trigger: CGGTGAAACGCAAATGGACCATGATTCTGATGATGA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCTGCATCAGCATCATTaGTGCTTATGCAATGGTAAA +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLHQHH*CLCNGK
Trigger: TTTACCATTGCATAAGCACCAATGATGCTGATGCAG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGAGTTTCAAAGATGGTaGCTGCTTAAGGAGAACACT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVEFQRW*LLKENT
Trigger: AGTGTTCTCCTTAAGCAGCCACCATCTTTGAAACTC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGAGTTTCAAAGATGGTaGCTGCTTAAGGAGAACACT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAEFQRW*LLKENT
Trigger: AGTGTTCTCCTTAAGCAGCCACCATCTTTGAAACTC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTATAAAGAAGGGGCAGTaGTGTGGGAATCTGAAGGGC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVIKKGQ*CGNLKG
Trigger: GCCCTTCAGATTCCCACACCACTGCCCCTTCTTTAT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCATGCCGACGGAGAACTaGAGTTCTATATGGACTTAT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVMPTEN*SSIWTY
Trigger: ATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCAT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTCAGTGGGAGTCATGTaGGTACTTTCACTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSVGVM*VLSLLK
Trigger: TTTCAGAAGTGAAAGTACCCACATGACTCCCACTGA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCAGGGATATGGATGTTaGAGCAGAAATCATGCTTGC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHQGYGC*SRNHAC
Trigger: GCAAGCATGATTTCTGCTCCAACATCCATATCCCTG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTTTTCCCAGGGATATaGATGTTGGAGCAGAAATCA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCFFPGI*MLEQKS
Trigger: TGATTTCTGCTCCAACATCCATATCCCTGGGAAAAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTGGATCGTACTTCTTaGGTTTCAGAGATAATGGCA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKILDRTS*VSEIMA
Trigger: TGCCATTATCTCTGAAACCCAAGAAGTACGATCCAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTGGATCGTACTTCTTaGGTTTCAGAGATAATGGCA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCLDRTS*VSEIMA
Trigger: TGCCATTATCTCTGAAACCCAAGAAGTACGATCCAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCATCTTGAAAACTGCTaGGACCTCACTGTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHHLENC*DLTVCN
Trigger: GTTACAGACAGTGAGGTCCCAGCAGTTTTCAAGATG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCAGGTGTTTGGAAGTTaGGTTTTGAGCAGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVQVFGS*VLSRFL
Trigger: AAGAAACCTGCTCAAAACCCAACTTCCAAACACCTG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGGAAATTGTAGGTCTTaGCATACCTTCTACTCTACA +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGGNCRS*HTFYST
Trigger: TGTAGAGTAGAAGGTATGCCAAGACCTACAATTTCC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTATACAGGGTCCCATTTaGATACAAGAAAAACCTGGA +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIIQGPI*IQEKPG
Trigger: TCCAGGTTTTTCTTGTATCCAAATGGGACCCTGTAT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTATACAGGGTCCCATTTaGATACAAGAAAAACCTGGA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCIQGPI*IQEKPG
Trigger: TCCAGGTTTTTCTTGTATCCAAATGGGACCCTGTAT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGCTTGTGTTCAATTTTaGCAGGTGTCAGTCTTAGGC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHACVQF*QVSVLG
Trigger: GCCTAAGACTGACACCTGCCAAAATTGAACACAAGC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATGGAAATCTTTCCCATaGAGTACTTGCTTCTTAAAA +
Preference number: 4 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQWKSFP*STCFLK
Trigger: TTTTAAGAAGCAAGTACTCCATGGGAAAGATTTCCA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAGAGGGTGTACCTCTTaGTCCTGTAGCCACTGTCAT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVRGCTS*SCSHCH
Trigger: ATGACAGTGGCTACAGGACCAAGAGGTACACCCTCT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCAACCAAAATACATTTaGCTTGGGTTCCCCAGTGAC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHQPKYI*LGFPSD
Trigger: GTCACTGGGGAACCCAAGCCAAATGTATTTTGGTTG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGATAATTTCAGGTGTTaGGTTCCCATCCACAGAGCA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHDNFRC*VPIHRA
Trigger: TGCTCTGTGGATGGGAACCCAACACCTGAAATTATC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGATCCATTGTCCTCCTaGATACCCAGGCTTTTTGAC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVDPLSS*IPRLFD
Trigger: GTCAAAAAGCCTGGGTATTCAGGAGGACAATGGATC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGGATGTGATTATAATTaGCACTGCACACAAGATTTG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIGCDYN*HCTQDL
Trigger: CAAATCTTGTGTGCAGTGTCAATTATAATCACATCC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAAAAAGGATCTGCTTTaGAATCAGCCTCTATGTTGG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAKKDLL*NQPLCW
Trigger: CCAACATAGAGGCTGATTTCAAAGCAGATCCTTTTT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTATTTGGACTGAAACTTaGAAACTGGAAAAATCAGCC +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCIWTET*KLEKSA
Trigger: GGCTGATTTTTCCAGTTTTCAAGTTTCAGTCCAAAT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTGCTCAATTGTCCTTTaGCCTTTCATTTGGACTGAA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVCSIVL*PFIWTE
Trigger: TTCAGTCCAAATGAAAGGTCAAAGGACAATTGAGCA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGCTCAATTGTCCTTTaGCCTTTCATTTGGACTGAA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTACSIVL*PFIWTE
Trigger: TTCAGTCCAAATGAAAGGTCAAAGGACAATTGAGCA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTGTTTCTAGGAGTTTaGAATAAAGAAGGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLFLGV*NKEGAV
Trigger: CACTGCCCCTTCTTTATTTCAAACTCCTAGAAACAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTTGTTTCTAGGAGTTTaGAATAAAGAAGGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVLFLGV*NKEGAV
Trigger: CACTGCCCCTTCTTTATTTCAAACTCCTAGAAACAA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTATTTGACATCATCTTaGAAACTGCTGGGACCTCAC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHYLTSS*KLLGPH
Trigger: GTGAGGTCCCAGCAGTTTTCAAGATGATGTCAAATA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGGAGAAGGCTTCCATTaGGAATCCTGTGGTTTATCC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVGEGFH*ESCGLS
Trigger: GGATAAACCACAGGATTCTCAATGGAAGCCTTCTCC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTGGAAGTTGGGTTTTaGGCAGGTTTCTTATCAAAG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTALEVGF*AGFLSK
Trigger: CTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCCATTGGGAAGCACATaGAACCGGGTTTTCTGTATC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVPLGST*NRVFCI
Trigger: GATACAGAAAACCCGGTTTCATGTGCTTCCCAATGG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAAGAAAAACCTGGAATaGGTCAACTGCAGTGGTTTT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVKKNLE*VNCSGF
Trigger: AAAACCACTGCAGTTGACTCATTCCAGGTTTTTCTT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAAGAAAAACCTGGAATaGGTCAACTGCAGTGGTTTT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAKKNLE*VNCSGF
Trigger: AAAACCACTGCAGTTGACTCATTCCAGGTTTTTCTT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAATAAGTGCCCCTGACTaGAGAAACGATGTTTCTTAT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTISAPD*RNDVSY
Trigger: ATAAGAAACATCGTTTCTTCAGTCAGGGGCACTTAT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCATTGGAGAATGAAATaGCATTGTTGGAAGGCAGCA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHHWRMK*HCWKAA
Trigger: TGCTGCCTTCCAACAATGTCATTTCATTCTCCAATG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACATTGGCATGAAATATaGACCTGTCATTGGAGAATG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAHWHEI*TCHWRM
Trigger: CATTCTCCAATGACAGGTTCATATTTCATGCCAATG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGAACCAAAAAGGATCTaGTTTGAAATCAGCCTCTAT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIEPKRI*FEISLY
Trigger: ATAGAGGCTGATTTCAAAGCAGATCCTTTTTGGTTC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGAACCAAAAAGGATCTaGTTTGAAATCAGCCTCTAT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCEPKRI*FEISLY
Trigger: ATAGAGGCTGATTTCAAAGCAGATCCTTTTTGGTTC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCATCATTGGTGCTTATaGAATGGTAAAGACCTGCAT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVHHWCL*NGKDLH
Trigger: ATGCAGGTCTTTACCATTGCATAAGCACCAATGATG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACATCAGCATCATTGGTaGTTATGCAATGGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTHQHHW*LCNGKD
Trigger: GTCTTTACCATTGCATAAGCACCAATGATGCTGATG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGTATGTGAGAATATCTaGATCAGCATCATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAVCENI*ISIIGA
Trigger: AGCACCAATGATGCTGATGCAGATATTCTCACATAC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCCCATAATTACTGTGTaGAGAGCTCCATTTTCATGC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHPIITV*RAPFSC
Trigger: GCATGAAAATGGAGCTCTGCACACAGTAATTATGGG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTGGAGGAGACTTCTGTaGCAGAAGCTGAACTTGTCA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVWRRLL*QKLNLS
Trigger: TGACAAGTTCAGCTTCTGGCACAGAAGTCTCCTCCA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTGTATCTTCTATCTTaGTTGTTACAGGTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCLYLLS*LLQVGS
Trigger: TGAACCGACCTGTAACAAGCAAGATAGAAGATACAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTTGCAAAGATTGGGTaGCAGGGAATTTTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIFAKIG*QGIFLL
Trigger: AAGAAGAAAAATTCCCTGGCACCCAATCTTTGCAAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTTGCAAAGATTGGGTaGCAGGGAATTTTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGFAKIG*QGIFLL
Trigger: AAGAAGAAAAATTCCCTGGCACCCAATCTTTGCAAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTTGTTATGGTTATTTaGAAAGATTGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAFVMVI*KDWVPG
Trigger: CCCTGGCACCCAATCTTTGCAAATAACCATAACAAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGAGATAATGGCAGATaGAATAACAGGAGGAGTTGT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRDNGR*NNRRSC
Trigger: ACAACTCCTCCTGTTATTGCATCTGCCATTATCTCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTTCCCGAAGTATGAGTaGATTTCTGGGGCAGTTCAG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVFPKYE*ISGAVQ
Trigger: CTGAACTGCCCCAGAAATGCACTCATACTTCGGGAA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTATTTCTGGCCTTTTaGCCTTTTCAATGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLFLAF*PFQWFL
Trigger: CAGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAATGGCTTGTCTCTTTTaGTCTATAATAACAGGGGGA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAMACLF*SIITGG
Trigger: TCCCCCTGTTATTATAGAGCAAAAGAGACAAGCCAT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCTGGGAACTGTCTCTTaGTCTTCTACTCTTAGAATC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLGTVS*SSTLRI
Trigger: GATTCTAAGAGTAGAAGAGCAAGAGACAGTTCCCAG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAATAATCTCCTTCCTCTaGCATCCCAACTTTGTTGAA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAIISFL*HPNFVE
Trigger: TTCAACAAAGTTGGGATGGCAGAGGAAGGAGATTAT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTACCAAGCACGTTCTGTaGTCTGCATTTATAGACGCC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVTKHVL*SAFIDA
Trigger: GGCGTCTATAAATGCAGAGCACAGAACGTGCTTGGT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATACTACAGATCACATTaGCCTTATTTCCAGACAGGT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTYYRSH*PYFQTG
Trigger: ACCTGTCTGGAAATAAGGCCAATGTGATCTGTAGTA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCAGTATGTTCCAGTCTaGTATTGTTCATCATCAGAA +
Preference number: 4 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKQYVPV*YCSSSE
Trigger: TTCTGATGATGAACAATACCAGACTGGAACATACTG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTCAGTATGTTCCAGTCTaGTATTGTTCATCATCAGAA +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCQYVPV*YCSSSE
Trigger: TTCTGATGATGAACAATACCAGACTGGAACATACTG...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGCGTTGGCTTTACTGTaGTATTTTCTTGCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTALALL*YFLASL
Trigger: TAAGGAAGCAAGAAAATACCACAGTAAAGCCAACGC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGCGTTGGCTTTACTGTaGTATTTTCTTGCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVALALL*YFLASL
Trigger: TAAGGAAGCAAGAAAATACCACAGTAAAGCCAACGC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTTTTCCCAGGGATATaGATGTTGGAGCAGAAATCA +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAFFPGI*MLEQKS
Trigger: TGATTTCTGCTCCAACATCCATATCCCTGGGAAAAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCATCCCCTCTTTGTTATaGTTATTTGCAAAGATTGGG +
Preference number: 4 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGIPSLL*LFAKIG
Trigger: CCCAATCTTTGCAAATAACCATAACAAAGAGGGGAT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTATCCCCTCTTTGTTATaGTTATTTGCAAAGATTGGG +
Preference number: 4 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIIPSLL*LFAKIG
Trigger: CCCAATCTTTGCAAATAACCATAACAAAGAGGGGAT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGGAACCATGATCTGTaGGTAAAAGAGGAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARNHDL*VKEELF
Trigger: AAAAAGCTCCTCTTTTACCCACAGATCATGGTTCCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCAGGTGTTTGGAAGTTaGGTTTTGAGCAGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHQVFGS*VLSRFL
Trigger: AAGAAACCTGCTCAAAACCCAACTTCCAAACACCTG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGGAAATTGTAGGTCTTaGCATACCTTCTACTCTACA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTGNCRS*HTFYST
Trigger: TGTAGAGTAGAAGGTATGCCAAGACCTACAATTTCC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCCCATTCTGTGCCACTaGTCAATGACAACCTTGGAT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVPILCH*SMTTLD
Trigger: ATCCAAGGTTGTCATTGACCAGTGGCACAGAATGGG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTATATGGGGAATTTTGTaGCCCATTAGCAAATTGTGT +
Preference number: 4 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCIWGIL*PISKLC
Trigger: ACACAATTTGCTAATGGGCCACAAAATTCCCCATAT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGTGGTAGACTCTTCTaGAATAATCCCAACATTGTT +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTSGRLF*NNPNIV
Trigger: AACAATGTTGGGATTATTTCAGAAGAGTCTACCACT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGTGGTAGACTCTTCTaGAATAATCCCAACATTGTT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTASGRLF*NNPNIV
Trigger: AACAATGTTGGGATTATTTCAGAAGAGTCTACCACT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTGCTTTTGTTGGTATTaGGGGTTGGCTAAGTGGACT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVCFCWY*GLAKWT
Trigger: AGTCCACTTAGCCAACCCTCAATACCAACAAAAGCA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCATCATTGGTGCTTATaGAATGGTAAAGACCTGCAT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHHHWCL*NGKDLH
Trigger: ATGCAGGTCTTTACCATTGCATAAGCACCAATGATG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGTATGTGAGAATATCTaGATCAGCATCATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHVCENI*ISIIGA
Trigger: AGCACCAATGATGCTGATGCAGATATTCTCACATAC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTGTATCTTCTATCTTaGTTGTTACAGGTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLYLLS*LLQVGS
Trigger: TGAACCGACCTGTAACAAGCAAGATAGAAGATACAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTTTGCAAAGATTGGGTaGCAGGGAATTTTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVFAKIG*QGIFLL
Trigger: AAGAAGAAAAATTCCCTGGCACCCAATCTTTGCAAA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTTGTTATGGTTATTTaGAAAGATTGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHFVMVI*KDWVPG
Trigger: CCCTGGCACCCAATCTTTGCAAATAACCATAACAAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTGCTCTCCTGTGATTTaGTCAACAGAGTTGTTTCCG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVCSPVI*STELFP
Trigger: CGGAAACAACTCTGTTGAGCAAATCACAGGAGAGCA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTATTTCTGGCCTTTTaGCCTTTTCAATGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLFLAF*PFQWFL
Trigger: CAGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGCATCCGTGGAAAATTaGATCTGTAATGTGCTAAGT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHASVEN*ICNVLS
Trigger: ACTTAGCACATTACAGATCCAATTTTCCACGGATGC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCAGTATGTTCCAGTCTaGTATTGTTCATCATCAGAA +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVQYVPV*YCSSSE
Trigger: TTCTGATGATGAACAATACCAGACTGGAACATACTG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCTGCATCAGCATCATTaGTGCTTATGCAATGGTAAA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLHQHH*CLCNGK
Trigger: TTTACCATTGCATAAGCACCAATGATGCTGATGCAG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGTTATTTGCAAAGATTaGGTGCCAGGGAATTTTTCT +
Preference number: 4 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAVICKD*VPGNFS
Trigger: AGAAAAATTCCCTGGCACCCAATCTTTGCAAATAAC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGTTATTTGCAAAGATTaGGTGCCAGGGAATTTTTCT +
Preference number: 4 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVVICKD*VPGNFS
Trigger: AGAAAAATTCCCTGGCACCCAATCTTTGCAAATAAC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGGAACCATGATCTGTaGGTAAAAGAGGAGCTTTTT +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHRNHDL*VKEELF
Trigger: AAAAAGCTCCTCTTTTACCCACAGATCATGGTTCCT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCATCTTGAAAACTGCTaGGACCTCACTGTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVHLENC*DLTVCN
Trigger: GTTACAGACAGTGAGGTCCCAGCAGTTTTCAAGATG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGCTTGTGTTCAATTTTaGCAGGTGTCAGTCTTAGGC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVACVQF*QVSVLG
Trigger: GCCTAAGACTGACACCTGCCAAAATTGAACACAAGC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTACAGGCTTGCCAACCTaGGCAACTACTTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVTGLPT*ATTFSL
Trigger: CAATGAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGGATGTGATTATAATTaGCACTGCACACAAGATTTG +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHGCDYN*HCTQDL
Trigger: CAAATCTTGTGTGCAGTGTCAATTATAATCACATCC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACATTTGGACTGAAACTTaGAAACTGGAAAAATCAGCC +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHIWTET*KLEKSA
Trigger: GGCTGATTTTTCCAGTTTTCAAGTTTCAGTCCAAAT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTGTATCTTCTATCTTaGTTGTTACAGGTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLYLLS*LLQVGS
Trigger: TGAACCGACCTGTAACAAGCAAGATAGAAGATACAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAAAGACACTCTTTTCTaGATGCCTCTGTGCATTCCA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVKDTLF*MPLCIP
Trigger: TGGAATGCACAGAGGCATGCAGAAAAGAGTGTCTTT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTATGCCGACGGAGAACTaGAGTTCTATATGGACTTAT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVMPTEN*SSIWTY
Trigger: ATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCAT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATGGAAATCTTTCCCATaGAGTACTTGCTTCTTAAAA +
Preference number: 4 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTWKSFP*STCFLK
Trigger: TTTTAAGAAGCAAGTACTCCATGGGAAAGATTTCCA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAAAAAGGATCTGCTTTaGAATCAGCCTCTATGTTGG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVKKDLL*NQPLCW
Trigger: CCAACATAGAGGCTGATTTCAAAGCAGATCCTTTTT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTTGGAAGTTGGGTTTTaGGCAGGTTTCTTATCAAAG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVLEVGF*AGFLSK
Trigger: CTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCATTGGCATGAAATATaGACCTGTCATTGGAGAATG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVHWHEI*TCHWRM
Trigger: CATTCTCCAATGACAGGTTCATATTTCATGCCAATG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTTTTTCCCAGGGATATaGATGTTGGAGCAGAAATCA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVFFPGI*MLEQKS
Trigger: TGATTTCTGCTCCAACATCCATATCCCTGGGAAAAA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
37% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGGATGTGATTATAATTaGCACTGCACACAAGATTTG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVGCDYN*HCTQDL
Trigger: CAAATCTTGTGTGCAGTGTCAATTATAATCACATCC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR TCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTATTTGGACTGAAACTTaGAAACTGGAAAAATCAGCC +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVIWTET*KLEKSA
Trigger: GGCTGATTTTTCCAGTTTTCAAGTTTCAGTCCAAAT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR GCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTTATTTCTGGCCTTTTaGCCTTTTCAATGGTTTCTG +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVLFLAF*PFQWFL
Trigger: CAGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGTTATTTGCAAAGATTaGGTGCCAGGGAATTTTTCT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVVICKD*VPGNFS
Trigger: AGAAAAATTCCCTGGCACCCAATCTTTGCAAATAAC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTATATGGGGAATTTTGTaGCCCATTAGCAAATTGTGT +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVIWGIL*PISKLC
Trigger: ACACAATTTGCTAATGGGCCACAAAATTCCCCATAT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CCA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTTGGAAATCTTTCCCATaGAGTACTTGCTTCTTAAAA +
Preference number: 4 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVWKSFP*STCFLK
Trigger: TTTTAAGAAGCAAGTACTCCATGGGAAAGATTTCCA...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp GCTGCCCAGTGTTGGGGGTCAATTCTCCGAGCAGAGAGAGGGAGCTaGCTCCTGTGTTCCCTGAATCTCCGGAGAGTGGAATCCCCACGC +
Preference number: 5 (lower is better)
Translates to: AAQCWGSILRAERGS*LLCSLNLRRVESPR
Trigger: GCGTGGGGATTCCACTCTCCGGAGATTCAGGGAACACAGGAGGCAGCTCCCTCTCTCTGCTCGGAGAATTGACCCCCAACACTGGGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp TTTCTGTCGCCGTTGAGAGCAGGGAGTATCCCGGCGTCTCCCAGGTaGTTTGTGGCTTGGGGACTCCCAAGGCCACACAGTGGAGCTGCA +
Preference number: 5 (lower is better)
Translates to: FLSPLRAGSIPASPR*FVAWGLPRPHSGAA
Trigger: TGCAGCTCCACTGTGTGGCCTTGGGAGTCCCCAAGCCACAAATCACCTGGGAGACGCCGGGATACTCCCTGCTCTCAACGGCGACAGAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp GTCTCCCAGGTGATTTGTGGCTTGGGGACTCCCAAGGCCACACAGTaGAGCTGCATTGCCTCTCCTGTCCTCCTGAGCATGCTCCTGGGA +
Preference number: 5 (lower is better)
Translates to: VSQVICGLGTPKATQ*SCIASPVLLSMLLG
Trigger: TCCCAGGAGCATGCTCAGGAGGACAGGAGAGGCAATGCAGCTCCACTGTGTGGCCTTGGGAGTCCCCAAGCCACAAATCACCTGGGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp CTTTCCCTGCAGAGAGACTTCTGGCACCTTGCACTTCAGTGCCATTaGGCCGAGTGGCAGCCATTGTTGCAGACTGAGCTGGCGTCAGAC +
Preference number: 5 (lower is better)
Translates to: LSLQRDFWHLALQCH*AEWQPLLQTELASD
Trigger: GTCTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTCTCTGCAGGGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp GGCACCTTGCACTTCAGTGCCATTGCGCCGAGTGGCAGCCATTGTTaGAGACTGAGCTGGCGTCAGACTTGCCAAGAGTGTTGTAGAAGG +
Preference number: 5 (lower is better)
Translates to: GTLHFSAIAPSGSHC*RLSWRQTCQECCRR
Trigger: CCTTCTACAACACTCTTGGCAAGTCTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CAGAGAGACTTCTGGCACCTTGCACTTCAGTGCCATTGCGCCGAGTaGCAGCCATTGTTGCAGACTGAGCTGGCGTCAGACTTGCCAAGA +
Preference number: 5 (lower is better)
Translates to: QRDFWHLALQCHCAE*QPLLQTELASDLPR
Trigger: TCTTGGCAAGTCTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTCTCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp ACACCTAGTGGATTAGAGGCAGCGCACAGGTACTGTCCACGGTCCTaGATGCTGACCCTCTGGATGGACAAGGTGCCATTGGGAAGCACA +
Preference number: 5 (lower is better)
Translates to: TPSGLEAAHRYCPRS*MLTLWMDKVPLGST
Trigger: TGTGCTTCCCAATGGCACCTTGTCCATCCAGAGGGTCAGCATTCAGGACCGTGGACAGTACCTGTGCGCTGCCTCTAATCCACTAGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CTCGGGATATTTCACGTCCTGATGAGACTCTGGTCCAGTGGATGGTaGGCTTTGGGTCTCCAACAGCCTCGCAAGGAAGAAGGACATCTG +
Preference number: 5 (lower is better)
Translates to: LGIFHVLMRLWSSGW*ALGLQQPRKEEGHL
Trigger: CAGATGTCCTTCTTCCTTGCGAGGCTGTTGGAGACCCAAAGCCCACCATCCACTGGACCAGAGTCTCATCAGGACGTGAAATATCCCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp TCCCTCGGGATATTTCACGTCCTGATGAGACTCTGGTCCAGTGGATaGTGGGCTTTGGGTCTCCAACAGCCTCGCAAGGAAGAAGGACAT +
Preference number: 5 (lower is better)
Translates to: SLGIFHVLMRLWSSG*WALGLQQPRKEEGH
Trigger: ATGTCCTTCTTCCTTGCGAGGCTGTTGGAGACCCAAAGCCCACCATCCACTGGACCAGAGTCTCATCAGGACGTGAAATATCCCGAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp TGTATCCCTCGGGATATTTCACGTCCTGATGAGACTCTGGTCCAGTaGATGGTGGGCTTTGGGTCTCCAACAGCCTCGCAAGGAAGAAGG +
Preference number: 5 (lower is better)
Translates to: CIPRDISRPDETLVQ*MVGFGSPTASQGRR
Trigger: CCTTCTTCCTTGCGAGGCTGTTGGAGACCCAAAGCCCACCATCCACTGGACCAGAGTCTCATCAGGACGTGAAATATCCCGAGGGATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp ACCTGCAAGGACTGCAAGCCCGAGAAGGTCTTGTCACTGACTCTGTaGATGCCATTGCTGTGCAGCATGAGTAACTCCAGTCTGCTCAGG +
Preference number: 5 (lower is better)
Translates to: TCKDCKPEKVLSLTL*MPLLCSMSNSSLLR
Trigger: CCTGAGCAGACTGGAGTTACTCATGCTGCACAGCAATGGCATTCACAGAGTCAGTGACAAGACCTTCTCGGGCTTGCAGTCCTTGCAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp CATTTCTGGGGCAGTTCAGTTATGCCCAGGAGAGAAGCTGCTGAGTaGGGAGCAGCTGTACTTACAGTCCTACCAGTGACTTTTCCCGGG +
Preference number: 5 (lower is better)
Translates to: HFWGSSVMPRREAAE*GAAVLTVLPVTFPG
Trigger: CCCGGGAAAAGTCACTGGTAGGACTGTAAGTACAGCTGCTCCTCACTCAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCCAGAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp CTGTTAGCAGGTCCCTTGAGTGCTGGCCTCACAATCCTGTGTCTATaGCGACGGAGAACTGGAGTTCTATATGGACTTATAGCTCGCCCT +
Preference number: 5 (lower is better)
Translates to: LLAGPLSAGLTILCL*RRRTGVLYGLIARP
Trigger: AGGGCGAGCTATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCATAGACACAGGATTGTGAGGCCAGCACTCAAGGGACCTGCTAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp AGTGCATTTCTGGGGCAGTTCAGTTATGCCCAGGAGAGAAGCTGCTaGGTGAGGAGCAGCTGTACTTACAGTCCTACCAGTGACTTTTCC +
Preference number: 5 (lower is better)
Translates to: SAFLGQFSYAQERSC*VRSSCTYSPTSDFS
Trigger: GGAAAAGTCACTGGTAGGACTGTAAGTACAGCTGCTCCTCACTCAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCCAGAAATGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp GGGAGAAGGCTTCCATTGAGAATCCTGTGGTTTATCCACTCTTGGTaGTGGCATAGGAGTGGAGGTCAACAGACTAGAGAGGGGAAAGTC +
Preference number: 5 (lower is better)
Translates to: GRRLPLRILWFIHSW*WHRSGGQQTREGKV
Trigger: GACTTTCCCCTCTCTAGTCTGTTGACCTCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGGAAGCCTTCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp GACCTTCCGGCTTCCCTCGGGTGTTTCCGAGACCACTGTTTGGTTTaGGAGTATCCAGGAAATTGTAGGTCTTGGCATACCTTCTACTCT +
Preference number: 5 (lower is better)
Translates to: DLPASLGCFRDHCLV*EYPGNCRSWHTFYS
Trigger: AGAGTAGAAGGTATGCCAAGACCTACAATTTCCTGGATACTCGCAAACCAAACAGTGGTCTCGGAAACACCCGAGGGAAGCCGGAAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp CATAGAGGACCCAATGAACACTGGGCTGGGGAGTTCCCTTTGCAGTaGAGGGCAGTTTCAAACTTTCACCTAAAACGCCAACGATGGCTT +
Preference number: 5 (lower is better)
Translates to: HRGPNEHWAGEFPLQ*RAVSNFHLKRQRWL
Trigger: AAGCCATCGTTGGCGTTTTAGGTGAAAGTTTGAAACTGCCCTGCACTGCAAAGGGAACTCCCCAGCCCAGTGTTCATTGGGTCCTCTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp GTAGTCCATTTGACATTTGGCTTAGGGATTCCATCAGACACACAATaGAGGGATAGCGATTCCCCACCGGCGCTCTTTATCATCCCCGGT +
Preference number: 5 (lower is better)
Translates to: VVHLTFGLGIPSDTQ*RDSDSPPALFIIPG
Trigger: ACCGGGGATGATAAAGAGCGCCGGTGGGGAATCGCTATCCCTGCATTGTGTGTCTGATGGAATCCCTAAGCCAAATGTCAAATGGACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CCAGGGAGAAGGCTTCCATTGAGAATCCTGTGGTTTATCCACTCTTaGTGCTGGCATAGGAGTGGAGGTCAACAGACTAGAGAGGGGAAA +
Preference number: 5 (lower is better)
Translates to: PGRRLPLRILWFIHS*CWHRSGGQQTREGK
Trigger: TTTCCCCTCTCTAGTCTGTTGACCTCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGGAAGCCTTCTCCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGAGACTTCTGGCACCTaGCACTTCAGTGCCATTGCG +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVETSGT*HFSAIA
Trigger: CGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACAGGTGATTTGTGGCTaGGGGACTCCCAAGGCCACA +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQQVICG*GTPKAT
Trigger: TGTGGCCTTGGGAGTCCCCAAGCCACAAATCACCTG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp GCCTCTATGTTGGTAAAAGTGTCTTCAGGCCTAAGAGCCACCTGTTaGTATTTGGGAGACAGCAGTGGAGTCTCAGTATGCTGGGGCTTC +
Preference number: 5 (lower is better)
Translates to: ASMLVKVSSGLRATC*YLGDSSGVSVCWGF
Trigger: GAAGCCCCAGCATACTGAGACTCCACTGCTGTCTCCCAAATATCAACAGGTGGCTCTTAGGCCTGAAGACACTTTTACCAACATAGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp GGCGTCAGACTTGCCAAGAGTGTTGTAGAAGGTGAGGAGGAACCATaGTCTGTGGGTAAAAGAGGAGCTTTTTCAGGAGGCTTAGTGGCT +
Preference number: 5 (lower is better)
Translates to: GVRLAKSVVEGEEEP*SVGKRGAFSGGLVA
Trigger: AGCCACTAAGCCTCCTGAAAAAGCTCCTCTTTTACCCACAGATCATGGTTCCTCCTCACCTTCTACAACACTCTTGGCAAGTCTGACGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp GAAGAGGGTGTACCTCTTGGTCCTGTAGCCACTGTCATCAGCTTGTaGTACATTGTTCACCACTGTTCCATCAGGCAAACTCCAGGATAC +
Preference number: 5 (lower is better)
Translates to: EEGVPLGPVATVISL*YIVHHCSIRQTPGY
Trigger: GTATCCTGGAGTTTGCCTGATGGAACAGTGGTGAACAATGTAGCACAAGCTGATGACAGTGGCTACAGGACCAAGAGGTACACCCTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CCTCACAATCCTGTGTCTATGCCGACGGAGAACTGGAGTTCTATATaGACTTATAGCTCGCCCTCTGCTCCAAATTGTCCTCTCTCTTCC +
Preference number: 5 (lower is better)
Translates to: PHNPVSMPTENWSSI*TYSSPSAPNCPLSS
Trigger: GGAAGAGAGAGGACAATTTGGAGCAGAGGGCGAGCTATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCATAGACACAGGATTGTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CTTGAGTGCTGGCCTCACAATCCTGTGTCTATGCCGACGGAGAACTaGAGTTCTATATGGACTTATAGCTCGCCCTCTGCTCCAAATTGT +
Preference number: 5 (lower is better)
Translates to: LECWPHNPVSMPTEN*SSIWTYSSPSAPNC
Trigger: ACAATTTGGAGCAGAGGGCGAGCTATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCATAGACACAGGATTGTGAGGCCAGCACTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp GCAGTGGTTTTAGTTCAGTCCCATCATAGAGGACCCAATGAACACTaGGCTGGGGAGTTCCCTTTGCAGTGCAGGGCAGTTTCAAACTTT +
Preference number: 5 (lower is better)
Translates to: AVVLVQSHHRGPNEH*AGEFPLQCRAVSNF
Trigger: AAAGTTTGAAACTGCCCTGCACTGCAAAGGGAACTCCCCAGCCCAGTGTTCATTGGGTCCTCTATGATGGGACTGAACTAAAACCACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGAAAGTGCTGCCCAGTGTaGGGGGTCAATTCTCCGAGC +
Preference number: 5 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRKCCPV*GVNSPS
Trigger: GCTCGGAGAATTGACCCCCAACACTGGGCAGCACTT...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGACAGGTGATTTGTGGCTaGGGGACTCCCAAGGCCACA +
Preference number: 5 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRQVICG*GTPKAT
Trigger: TGTGGCCTTGGGAGTCCCCAAGCCACAAATCACCTG...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS TCA 90 bp TTGTTGGAACTGAGTATGTGCTATAGCCAGAAATCTGCCTGGGGGTaGTGGTTGGGCCTTTCCTGTTCTTCAGAGACCCCTTTGTTTGGT +
Preference number: 5 (lower is better)
Translates to: LLELSMCYSQKSAWG*WLGLSCSSETPLFG
Trigger: ACCAAACAAAGGGGTCTCTGAAGAACAGGAAAGGCCCAACCATCACCCCCAGGCAGATTTCTGGCTATAGCACATACTCAGTTCCAACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TCTGTCCCTGTCAAAGATGATGCAGGGAGTTTCAAAGATGGTGGCTaGTTAAGGAGAACACTGGGCTTGGGTTCTTCAAGTCCAGATCCA +
Preference number: 5 (lower is better)
Translates to: SVPVKDDAGSFKDGG*LRRTLGLGSSSPDP
Trigger: TGGATCTGGACTTGAAGAACCCAAGCCCAGTGTTCTCCTTAAGCAGCCACCATCTTTGAAACTCCCTGCATCATCTTTGACAGGGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TCTGTCCATTTCTGCGAGGCAGTTTCTATCCTGGGAACTGTCTCTTaGTCTTCTACTCTTAGAATCACTACCCTTCTCTCTGAGCCCGAG +
Preference number: 5 (lower is better)
Translates to: SVHFCEAVSILGTVS*SSTLRITTLLSEPE
Trigger: CTCGGGCTCAGAGAGAAGGGTAGTGATTCTAAGAGTAGAAGAGCAAGAGACAGTTCCCAGGATAGAAACTGCCTCGCAGAAATGGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp AGAAGGCTTCCATTGAGAATCCTGTGGTTTATCCACTCTTGGTGCTaGCATAGGAGTGGAGGTCAACAGACTAGAGAGGGGAAAGTCAGT +
Preference number: 5 (lower is better)
Translates to: RRLPLRILWFIHSWC*HRSGGQQTREGKVS
Trigger: ACTGACTTTCCCCTCTCTAGTCTGTTGACCTCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGGAAGCCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCTGTCTGGATGGAGCTTaGTCAGCCGGTTTCCTTCTA +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVCLDGA*SAGFLL
Trigger: TAGAAGGAAACCGGCTGACAAAGCTCCATCCAGACA...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGAGTACAAAGCCAGGAGTaGCCACACTGGCTGGATGTG +
Preference number: 5 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRVQSQE*PHWLDV
Trigger: CACATCCAGCCAGTGTGGCAACTCCTGGCTTTGTAC...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAAGTGCTGCCCAGTGTaGGGGGTCAATTCTCCGAGC +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGKCCPV*GVNSPS
Trigger: GCTCGGAGAATTGACCCCCAACACTGGGCAGCACTT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTGCGGGGTGTGCACTTaGGGAAGACGTTCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVCGVCT*GRRSPH
Trigger: GTGGGGAGAACGTCTTCCCAAAGTGCACACCCCGCA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATGCGGGGTGTGCACTTaGGGAAGACGTTCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTCGVCT*GRRSPH
Trigger: GTGGGGAGAACGTCTTCCCAAAGTGCACACCCCGCA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGCGGGGTGTGCACTTaGGGAAGACGTTCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTACGVCT*GRRSPH
Trigger: GTGGGGAGAACGTCTTCCCAAAGTGCACACCCCGCA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGAGTGGCAGCCATTGTaGCAGACTGAGCTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKEWQPL*QTELAS
Trigger: TGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGAGTGGCAGCCATTGTaGCAGACTGAGCTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCEWQPL*QTELAS
Trigger: TGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGAGTGGCAGCCATTGTaGCAGACTGAGCTGGCGTCA +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIEWQPL*QTELAS
Trigger: TGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGTTAAGATCTCAGGATaGGGGCTAGCCTCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQVKISG*GLASAE
Trigger: CTCAGCAGAGGCTAGCCCCAATCCTGAGATCTTAAC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCGTCTCCCAGGTGATTaGTGGCTTGGGGACTCCCAA +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGRLPGD*WLGDSQ
Trigger: TTGGGAGTCCCCAAGCCACAAATCACCTGGGAGACG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TTGAGCAGGTTTCTTATCAAAGACACTCTTTTCTGCATGCCTCTGTaGATTCCAATGCAAGGCATGAGTGCTGGCCTCTGGAAAGCTGAG +
Preference number: 5 (lower is better)
Translates to: LSRFLIKDTLFCMPL*IPMQGMSAGLWKAE
Trigger: CTCAGCTTTCCAGAGGCCAGCACTCATGCCTTGCATTGGAATGCACAGAGGCATGCAGAAAAGAGTGTCTTTGATAAGAAACCTGCTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TGCTGCTTGTGTTCAATTTTGGCAGGTGTCAGTCTTAGGCGGACATaGATCAGGACCAGGTCATCTCCCATTTTGTTTCTTGCCACACAT +
Preference number: 5 (lower is better)
Translates to: CCLCSILAGVSLRRT*IRTRSSPILFLATH
Trigger: ATGTGTGGCAAGAAACAAAATGGGAGATGACCTGGTCCTGATGCATGTCCGCCTAAGACTGACACCTGCCAAAATTGAACACAAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp AATTCGGGGAGGGTAGGCCACAATCGTCACGGGAACACTAATAACTaGCTGGCCAACGCTGTTTTGAGCCTTACAGATATAATTTCCTCT +
Preference number: 5 (lower is better)
Translates to: NSGRVGHNRHGNTNN*LANAVLSLTDIISS
Trigger: AGAGGAAATTATATCTGTAAGGCTCAAAACAGCGTTGGCCAGGCAGTTATTAGTGTTCCCGTGACGATTGTGGCCTACCCTCCCCGAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp AAATTTGTTTTCTGGCCAGGGAGAAGGCTTCCATTGAGAATCCTGTaGTTTATCCACTCTTGGTGCTGGCATAGGAGTGGAGGTCAACAG +
Preference number: 5 (lower is better)
Translates to: KFVFWPGRRLPLRIL*FIHSWCWHRSGGQQ
Trigger: CTGTTGACCTCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGGAAGCCTTCTCCCTGGCCAGAAAACAAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGTACAAAGCCAGGAGTaGCCACACTGGCTGGATGTG +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGVQSQE*PHWLDV
Trigger: CACATCCAGCCAGTGTGGCAACTCCTGGCTTTGTAC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAAGGAGAACACTGGGCTaGGGTTCTTCAAGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQRRTLG*GSSSPD
Trigger: ATCTGGACTTGAAGAACCCAAGCCCAGTGTTCTCCT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGCCCTCTGCTCCAAATaGTCCTCTCTCTTCCCACGT +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGALCSK*SSLFPR
Trigger: ACGTGGGAAGAGAGAGGACAATTTGGAGCAGAGGGC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACGTCTCCCAGGTGATTaGTGGCTTGGGGACTCCCAA +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTARLPGD*WLGDSQ
Trigger: TTGGGAGTCCCCAAGCCACAAATCACCTGGGAGACG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp CAGACAGGTCTGTCATGTTCAAAGACAAGGAGCCAAAAGGTTCTATaGAATCTTGAGGTGAGACGGAGGCAGATCCATTGTCCTCCTGAA +
Preference number: 5 (lower is better)
Translates to: QTGLSCSKTRSQKVL*NLEVRRRQIHCPPE
Trigger: TTCAGGAGGACAATGGATCTGCCTCCGTCTCACCTCAAGATTTCATAGAACCTTTTGGCTCCTTGTCTTTGAACATGACAGACCTGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp ATGTATCCCAGAGACTTGTTTTCCAGCCTCTGTCCCTGTCAAAGATaGTGCAGGGAGTTTCAAAGATGGTGGCTGCTTAAGGAGAACACT +
Preference number: 5 (lower is better)
Translates to: MYPRDLFSSLCPCQR*CREFQRWWLLKENT
Trigger: AGTGTTCTCCTTAAGCAGCCACCATCTTTGAAACTCCCTGCATCATCTTTGACAGGGACAGAGGCTGGAAAACAAGTCTCTGGGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp ACCACTAAATCTGTTCCAGCTTGGATGGTCCTAGGCATGCTCAGGTaGCCACTAGTGTCTATAGGAGTTTTTCCCAGGGATATGGATGTT +
Preference number: 5 (lower is better)
Translates to: TTKSVPAWMVLGMLR*PLVSIGVFPRDMDV
Trigger: AACATCCATATCCCTGGGAAAAACTCCTATAGACACTAGTGGTCACCTGAGCATGCCTAGGACCATCCAAGCTGGAACAGATTTAGTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp CTACACACTTGTAAAAACCACGGTCATAAAGACTCAAATTATGGATaGTCAACGTTCCATCGGGTGTCACCCAGACCTTCCGGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LHTCKNHGHKDSNYG*STFHRVSPRPSGFP
Trigger: AGGGAAGCCGGAAGGTCTGGGTGACACCCGATGGAACGTTGATCATCCATAATTTGAGTCTTTATGACCGTGGTTTTTACAAGTGTGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TCAACAGAGTTGTTTCCGAAGCTGTTATATTTCCCGAAGTATGAGTaGATTTCTGGGGCAGTTCAGTTATGCCCAGGAGAGAAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: STELFPKLLYFPKYE*ISGAVQLCPGEKLL
Trigger: CAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCCAGAAATGCACTCATACTTCGGGAAATATAACAGCTTCGGAAACAACTCTGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp CCAGATAATTTCAGGTGTTGGGTTCCCATCCACAGAGCAGTTCATTaGTACAGGCTTGCCAACCTGGGCAACTACTTTTTCATTGAATGG +
Preference number: 5 (lower is better)
Translates to: PDNFRCWVPIHRAVH*YRLANLGNYFFIEW
Trigger: CCATTCAATGAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGTAGCAATGAACTGCTCTGTGGATGGGAACCCAACACCTGAAATTATCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp AGAGAACACAGTGTTCCGGGGAAGAATCCAGCTAATAGAAGCATCTaGAATACCAGTGGAAAGGCATGGAAGATCGAGTATCTCACCCAT +
Preference number: 5 (lower is better)
Translates to: REHSVPGKNPANRSI*NTSGKAWKIEYLTH
Trigger: ATGGGTGAGATACTCGATCTTCCATGCCTTTCCACTGGTATTCCAGATGCTTCTATTAGCTGGATTCTTCCCCGGAACACTGTGTTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp GGGTTCCCATCCACAGAGCAGTTCATTGCTACAGGCTTGCCAACCTaGGCAACTACTTTTTCATTGAATGGGTTTCTGAATGTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: GFPSTEQFIATGLPT*ATTFSLNGFLNVGL
Trigger: AAGACCAACATTCAGAAACCCATTCAATGAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGTAGCAATGAACTGCTCTGTGGATGGGAACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp TATGTATTTTCCACCGACTTGAGGTCTGTCGATTACAAGGCCACCTaGCGTAGTCCATTTGACATTTGGCTTAGGGATTCCATCAGACAC +
Preference number: 5 (lower is better)
Translates to: YVFSTDLRSVDYKAT*RSPFDIWLRDSIRH
Trigger: GTGTCTGATGGAATCCCTAAGCCAAATGTCAAATGGACTACGCCAGGTGGCCTTGTAATCGACAGACCTCAAGTCGGTGGAAAATACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGTACAAAGCCAGGAGTaGCCACACTGGCTGGATGTG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTVQSQE*PHWLDV
Trigger: CACATCCAGCCAGTGTGGCAACTCCTGGCTTTGTAC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGCCCTCTGCTCCAAATaGTCCTCTCTCTTCCCACGT +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTALCSK*SSLFPR
Trigger: ACGTGGGAAGAGAGAGGACAATTTGGAGCAGAGGGC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGCCCTCTGCTCCAAATaGTCCTCTCTCTTCCCACGT +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAALCSK*SSLFPR
Trigger: ACGTGGGAAGAGAGAGGACAATTTGGAGCAGAGGGC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGAGACTTCTGGCACCTaGCACTTCAGTGCCATTGCG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTETSGT*HFSAIA
Trigger: CGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCAGGGAGTATCAGTTGTaGTTGGAACTGAGTATGTGC +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVREYQL*LELSMC
Trigger: GCACATACTCAGTTCCAACAACAACTGATACTCCCT...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGCAGGTGTTTGGAAGTaGGGTTTTGAGCAGGTTTCT +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQAGVWK*GFEQVS
Trigger: AGAAACCTGCTCAAAACCCAACTTCCAAACACCTGC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCTGCTTGTGTTCAATTTaGGCAGGTGTCAGTCTTAGG +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVCLCSI*AGVSLR
Trigger: CCTAAGACTGACACCTGCCAAAATTGAACACAAGCA...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGGGGAGCCAGAAGCCTaGCAGTCAACTTGGAAATCT +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCGEPEA*QSTWKS
Trigger: AGATTTCCAAGTTGACTGCAAGGCTTCTGGCTCCCC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACAAAATACATTTGGCTaGGGTTCCCCAGTGACCTCA +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQQNTFG*GSPVTS
Trigger: TGAGGTCACTGGGGAACCCAAGCCAAATGTATTTTG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCGTCTCCCAGGTGATTaGTGGCTTGGGGACTCCCAA +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHRLPGD*WLGDSQ
Trigger: TTGGGAGTCCCCAAGCCACAAATCACCTGGGAGACG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp TTGCTCAACAGAGTTGTTTCCGAAGCTGTTATATTTCCCGAAGTATaGGTGCATTTCTGGGGCAGTTCAGTTATGCCCAGGAGAGAAGCT +
Preference number: 5 (lower is better)
Translates to: LLNRVVSEAVIFPEV*VHFWGSSVMPRREA
Trigger: AGCTTCTCTCCTGGGCATAACTGAACTGCCCCAGAAATGCACTCATACTTCGGGAAATATAACAGCTTCGGAAACAACTCTGTTGAGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp ACAGCTGCACTGTCCACAACATTAAATAATTTGAAATCAGGAAGGTaGGTGGGTAGTAGTGTTTGCGGATTCACGGTGGAGGAGACTTCT +
Preference number: 5 (lower is better)
Translates to: TAALSTTLNNLKSGR*VGSSVCGFTVEETS
Trigger: AGAAGTCTCCTCCACCGTGAATCCGCAAACACTACTACCCACGCACCTTCCTGATTTCAAATTATTTAATGTTGTGGACAGTGCAGCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp TTCCAAGGTTCCATTTTGATGCACGGTGATTCTGCCTCCGTAGTATaGAGCCGTGAGGAAAATATTGTCTGGCATAATCCATGTGATCTG +
Preference number: 5 (lower is better)
Translates to: FQGSILMHGDSASVV*SREENIVWHNPCDL
Trigger: CAGATCACATGGATTATGCCAGACAATATTTTCCTCACGGCTCCATACTACGGAGGCAGAATCACCGTGCATCAAAATGGAACCTTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGGAGACCATTTCTTTaGGGAGGGAGGTCAGGAAGT +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRRPFL*GGRSGS
Trigger: ACTTCCTGACCTCCCTCCCAAAAGAAATGGTCTCCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGGAGACCATTTCTTTaGGGAGGGAGGTCAGGAAGT +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIRRPFL*GGRSGS
Trigger: ACTTCCTGACCTCCCTCCCAAAAGAAATGGTCTCCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATCCAACTTCCCCTTTTaGTCTATTAGGATTCGCCCA +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQSNFPF*SIRIRP
Trigger: TGGGCGAATCCTAATAGACAAAAAGGGGAAGTTGGA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCATGTATCCCAGAGACTaGTTTTCCAGCCTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGMYPRD*FSSLCP
Trigger: GGGACAGAGGCTGGAAAACAAGTCTCTGGGATACAT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCGGTTATTTGCAAAGATaGGGTGCCAGGGAATTTTTC +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVGYLQR*GAREFF
Trigger: GAAAAATTCCCTGGCACCCAATCTTTGCAAATAACC...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGAGCACTAGGAAGGAGTaGATGAAGGGCTGCTCTTTC +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKSTRKE*MKGCSF
Trigger: GAAAGAGCAGCCCTTCATCAACTCCTTCCTAGTGCT...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGTTAAGATCTCAGGATaGGGGCTAGCCTCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAVKISG*GLASAE
Trigger: CTCAGCAGAGGCTAGCCCCAATCCTGAGATCTTAAC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCCTCCCATTTTGTTTCTaGCCACACATAAGTAGTCAC +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVLPFCF*PHISSH
Trigger: GTGACTACTTATGTGTGGCAAGAAACAAAATGGGAG...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCAGGTCATCTCCCATTTaGTTTCTTGCCACACATAAG +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVRSSPI*FLATHK
Trigger: CTTATGTGTGGCAAGAAACAAAATGGGAGATGACCT...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGGGGAGCCAGAAGCCTaGCAGTCAACTTGGAAATCT +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAGEPEA*QSTWKS
Trigger: AGATTTCCAAGTTGACTGCAAGGCTTCTGGCTCCCC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTATTGCTCCTGTAGTTTaGCCTTATCCGTGGGATGGC +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIIAPVV*PYPWDG
Trigger: GCCATCCCACGGATAAGGCAAAACTACAGGAGCAAT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGCCGTGAGGAAAATATaGTCTGGCATAATCCATGTG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQAVRKI*SGIIHV
Trigger: CACATGGATTATGCCAGACAATATTTTCCTCACGGC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTCATTGCTACAGGCTaGCCAACCTGGGCAACTACT +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGFIATG*PTWATT
Trigger: AGTAGTTGCCCAGGTTGGCAAGCCTGTAGCAATGAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp CAGTTCAGTAGTAATTTCTCACCCAAATTCACCTCTGTCCATTTCTaGGAGGCAGTTTCTATCCTGGGAACTGTCTCTTGCTCTTCTACT +
Preference number: 5 (lower is better)
Translates to: QFSSNFSPKFTSVHF*EAVSILGTVSCSST
Trigger: AGTAGAAGAGCAAGAGACAGTTCCCAGGATAGAAACTGCCTCGCAGAAATGGACAGAGGTGAATTTGGGTGAGAAATTACTACTGAACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp AAGAATCCAGCTAATAGAAGCATCTGGAATACCAGTGGAAAGGCATaGAAGATCGAGTATCTCACCCATAATTACTGTGTGCAGAGCTCC +
Preference number: 5 (lower is better)
Translates to: KNPANRSIWNTSGKA*KIEYLTHNYCVQSS
Trigger: GGAGCTCTGCACACAGTAATTATGGGTGAGATACTCGATCTTCCATGCCTTTCCACTGGTATTCCAGATGCTTCTATTAGCTGGATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CGAGACCACTGTTTGGTTTGCGAGTATCCAGGAAATTGTAGGTCTTaGCATACCTTCTACTCTACACTTAAGTTTCACAGTACTTCCGGA +
Preference number: 5 (lower is better)
Translates to: RDHCLVCEYPGNCRS*HTFYSTLKFHSTSG
Trigger: TCCGGAAGTACTGTGAAACTTAAGTGTAGAGTAGAAGGTATGCCAAGACCTACAATTTCCTGGATACTCGCAAACCAAACAGTGGTCTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTGTCTGGATGGAGCTTaGTCAGCCGGTTTCCTTCTA +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVCLDGA*SAGFLL
Trigger: TAGAAGGAAACCGGCTGACAAAGCTCCATCCAGACA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGTGATGGATCAATGGTaGGCTTTGTACACAGGAACG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIVMDQW*ALYTGT
Trigger: CGTTCCTGTGTACAAAGCCAACCATTGATCCATCAC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGTGATGGATCAATGGTaGGCTTTGTACACAGGAACG +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGVMDQW*ALYTGT
Trigger: CGTTCCTGTGTACAAAGCCAACCATTGATCCATCAC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGTGATGGATCAATGGTaGGCTTTGTACACAGGAACG +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCVMDQW*ALYTGT
Trigger: CGTTCCTGTGTACAAAGCCAACCATTGATCCATCAC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGGAGAACACTGGGCTaGGGTTCTTCAAGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRRTLG*GSSSPD
Trigger: ATCTGGACTTGAAGAACCCAAGCCCAGTGTTCTCCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGGAGAACACTGGGCTaGGGTTCTTCAAGTCCAGAT +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVRRTLG*GSSSPD
Trigger: ATCTGGACTTGAAGAACCCAAGCCCAGTGTTCTCCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCATGTATCCCAGAGACTaGTTTTCCAGCCTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVMYPRD*FSSLCP
Trigger: GGGACAGAGGCTGGAAAACAAGTCTCTGGGATACAT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGAGCAGAAATCATGCTaGCTTCAGTGGGAGTCATGT +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKEQKSC*LQWESC
Trigger: ACATGACTCCCACTGAAGCAAGCATGATTTCTGCTC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGAGCAGAAATCATGCTaGCTTCAGTGGGAGTCATGT +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCEQKSC*LQWESC
Trigger: ACATGACTCCCACTGAAGCAAGCATGATTTCTGCTC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGAGCAGAAATCATGCTaGCTTCAGTGGGAGTCATGT +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIEQKSC*LQWESC
Trigger: ACATGACTCCCACTGAAGCAAGCATGATTTCTGCTC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCCAGGGATATGGATGTaGGAGCAGAAATCATGCTTG +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKPGIWM*EQKSCL
Trigger: CAAGCATGATTTCTGCTCCAACATCCATATCCCTGG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp AAGCAGTTGTCTAGACTCGTGGAGGAATTCTGCCTTAGAAAGTCTGTCTTCAGATTGTGCTTGTTGCTTTaGTTGGTATTGAGGGTTGGC +
Preference number: 5 (lower is better)
Translates to: KQLSRLVEEFCLRKSVFRLCLLL*LVLRVG
Trigger: GCCAACCCTCAATACCAACAAAAGCAACAAGCACAA...TCTGAAGACAGACTTTCTAAGGCAGAATTCCTCCACGAGTCTAGACAACTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GGTGGGTATCATTTGACCTCTGGCAGCCATAGAGTACCAATGTTAACTGGAGTCAGAGTTTTGTGCTTGTaGCTTTTGTTGGTATTGAGG +
Preference number: 5 (lower is better)
Translates to: GGYHLTSGSHRVPMLTGVRVLCL*LLLVLR
Trigger: CCTCAATACCAACAAAAGCAACAAGCACAAAACTCT...GACTCCAGTTAACATTGGTACTCTATGGCTGCCAGAGGTCAAATGATACCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGCACTAGGAAGGAGTaGATGAAGGGCTGCTCTTTC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSTRKE*MKGCSF
Trigger: GAAAGAGCAGCCCTTCATCAACTCCTTCCTAGTGCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACTATTTGACATCATCTaGAAAACTGCTGGGACCTCA +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQLFDII*KTAGTS
Trigger: TGAGGTCCCAGCAGTTTTCAAGATGATGTCAAATAG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGTTAAGATCTCAGGATaGGGGCTAGCCTCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHVKISG*GLASAE
Trigger: CTCAGCAGAGGCTAGCCCCAATCCTGAGATCTTAAC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGGGAGAAGGCTTCCATaGAGAATCCTGTGGTTTATC +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIGRRLP*RILWFI
Trigger: GATAAACCACAGGATTCTCAATGGAAGCCTTCTCCC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTGGGAGAAGGCTTCCATaGAGAATCCTGTGGTTTATC +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCGRRLP*RILWFI
Trigger: GATAAACCACAGGATTCTCAATGGAAGCCTTCTCCC...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGCAGGTGTTTGGAAGTaGGGTTTTGAGCAGGTTTCT +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIAGVWK*GFEQVS
Trigger: AGAAACCTGCTCAAAACCCAACTTCCAAACACCTGC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGCCTTGCAGTCAACTaGGAAATCTTTCCCATGGAG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKISLAVN*EIFPME
Trigger: CTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAATTGCTCCTGTAGTTTaGCCTTATCCGTGGGATGGC +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTIAPVV*PYPWDG
Trigger: GCCATCCCACGGATAAGGCAAAACTACAGGAGCAAT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCAAAATACATTTGGCTaGGGTTCCCCAGTGACCTCA +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGQNTFG*GSPVTS
Trigger: TGAGGTCACTGGGGAACCCAAGCCAAATGTATTTTG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAATCCCCACTAGGATTTaGAGCTACACACACATACTT +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQIPTRI*SYTHIL
Trigger: AAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGAT...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTCCAAGGTTCCATTTaGATGCACGGTGATTCTGCC +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGFQGSI*MHGDSA
Trigger: GGCAGAATCACCGTGCATCAAAATGGAACCTTGGAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTCCAAGGTTCCATTTaGATGCACGGTGATTCTGCC +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCFQGSI*MHGDSA
Trigger: GGCAGAATCACCGTGCATCAAAATGGAACCTTGGAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCCTGGCGTAGTCCATTaGACATTTGGCTTAGGGATT +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKPGVVH*TFGLGI
Trigger: AATCCCTAAGCCAAATGTCAAATGGACTACGCCAGG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCCCTGGCGTAGTCCATTaGACATTTGGCTTAGGGATT +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGPGVVH*TFGLGI
Trigger: AATCCCTAAGCCAAATGTCAAATGGACTACGCCAGG...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAACTGGCCAACGCTGTTTaGAGCCTTACAGATATAATT +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQLANAV*SLTDII
Trigger: AATTATATCTGTAAGGCTCAAAACAGCGTTGGCCAG...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCAGGTGATTTGTGGCTaGGGGACTCCCAAGGCCACA +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVQVICG*GTPKAT
Trigger: TGTGGCCTTGGGAGTCCCCAAGCCACAAATCACCTG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp CATTTGCGTTTCACCGGTCTCATCTCTGCCTTTGGTAAAGTGATTTaGGCATCCGTGGAAAATTGGATCTGTAATGTGCTAAGTGTGGTA +
Preference number: 5 (lower is better)
Translates to: HLRFTGLISAFGKVI*ASVENWICNVLSVV
Trigger: TACCACACTTAGCACATTACAGATCCAATTTTCCACGGATGCTCAAATCACTTTACCAAAGGCAGAGATGAGACCGGTGAAACGCAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp TGGGAATCTGAAGGGCGCTTGGAGAAGCCTGGATCTTTAGTAGTGTaGGCCAAGGAGTTATTACTGCTAACTCTACTTACTTCTGTTAAA +
Preference number: 5 (lower is better)
Translates to: WESEGRLEKPGSLVV*AKELLLLTLLTSVK
Trigger: TTTAACAGAAGTAAGTAGAGTTAGCAGTAATAACTCCTTGGCTCACACTACTAAAGATCCAGGCTTCTCCAAGCGCCCTTCAGATTCCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp TATAATAACAGGGGGAGCTGTGATGACTTGTATCTTAACCAACAGTaGATCCTGGCCAGATGGGTTGTTGGCTACACACTTGTAAAAACC +
Preference number: 5 (lower is better)
Translates to: YNNRGSCDDLYLNQQ*ILARWVVGYTLVKT
Trigger: GGTTTTTACAAGTGTGTAGCCAACAACCCATCTGGCCAGGATTCACTGTTGGTTAAGATACAAGTCATCACAGCTCCCCCTGTTATTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp TACAGCGATACTTTCCTGACTTGTTCCGAGTTGCTTTGTAAACAATaGGAGAACCATTGCTTGCCATCAGATATGGGGAATTTTGTGGCC +
Preference number: 5 (lower is better)
Translates to: YSDTFLTCSELLCKQ*ENHCLPSDMGNFVA
Trigger: GGCCACAAAATTCCCCATATCTGATGGCAAGCAATGGTTCTCTCATTGTTTACAAAGCAACTCGGAACAAGTCAGGAAAGTATCGCTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp AGGAGTTTTTCCCAGGGATATGGATGTTGGAGCAGAAATCATGCTTaGTTCAGTGGGAGTCATGTGGGTACTTTCACTTCTGAAATAGTT +
Preference number: 5 (lower is better)
Translates to: RSFSQGYGCWSRNHA*FSGSHVGTFTSEIV
Trigger: AACTATTTCAGAAGTGAAAGTACCCACATGACTCCCACTGAAGCAAGCATGATTTCTGCTCCAACATCCATATCCCTGGGAAAAACTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TCAACTTGGAAATCTTTCCCATGGAGTACTTGCTTCTTAAAATGCTaGTTGTGTTCAATTTTGGCAGGTGTCAGTCTTAGGCGGACATGC +
Preference number: 5 (lower is better)
Translates to: STWKSFPWSTCFLKC*LCSILAGVSLRRTC
Trigger: GCATGTCCGCCTAAGACTGACACCTGCCAAAATTGAACACAAGCAGCATTTTAAGAAGCAAGTACTCCATGGGAAAGATTTCCAAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CCAAAACAGTATGTTCCAGTCTGGTATTGTTCATCATCAGAATCATaGTCCATTTGCGTTTCACCGGTCTCATCTCTGCCTTTGGTAAAG +
Preference number: 5 (lower is better)
Translates to: PKQYVPVWYCSSSES*SICVSPVSSLPLVK
Trigger: CTTTACCAAAGGCAGAGATGAGACCGGTGAAACGCAAATGGACCATGATTCTGATGATGAACAATACCAGACTGGAACATACTGTTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CTTCTTGAGAGTTTTGTGCTTGTTGCTTTTGTTGGTATTGAGGGTTaGCTAAGTGGACTGGAAAGTGGTGGTGTCACCACTAAATCTGTT +
Preference number: 5 (lower is better)
Translates to: LLESFVLVAFVGIEG*LSGLESGGVTTKSV
Trigger: AACAGATTTAGTGGTGACACCACCACTTTCCAGTCCACTTAGCCAACCCTCAATACCAACAAAAGCAACAAGCACAAAACTCTCAAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATGTTCCAGTCTGGTATaGTTCATCATCAGAATCATG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQCSSLV*FIIRIM
Trigger: CATGATTCTGATGATGAACAATACCAGACTGGAACA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGGACTGTATTGGCTTaGTTGGTGAAGCTACTAAGC +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIRTVLA*LVKLLS
Trigger: GCTTAGTAGCTTCACCAACAAAGCCAATACAGTCCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGTCCATAACTTTCTGTaGGATTTGCTGACTGCAGGA +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIVHNFL*DLLTAG
Trigger: TCCTGCAGTCAGCAAATCCAACAGAAAGTTATGGAC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCCAGGGATATGGATGTaGGAGCAGAAATCATGCTTG +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVPGIWM*EQKSCL
Trigger: CAAGCATGATTTCTGCTCCAACATCCATATCCCTGG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACCAGGGATATGGATGTaGGAGCAGAAATCATGCTTG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTPGIWM*EQKSCL
Trigger: CAAGCATGATTTCTGCTCCAACATCCATATCCCTGG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTGTGCTTGTTGCTTTaGTTGGTATTGAGGGTTGGC +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGLCLLL*LVLRVG
Trigger: GCCAACCCTCAATACCAACAAAAGCAACAAGCACAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGAGACTTCTGGCACCTaGCACTTCAGTGCCATTGCG +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVETSGT*HFSAIA
Trigger: CGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATCTTCAGAGACCCCTTaGTTTGGTCTTTTGCTTTTT +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQSSETP*FGLLLF
Trigger: AAAAAGCAAAAGACCAAACAAAGGGGTCTCTGAAGA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGGGAGTATCAGTTGTaGTTGGAACTGAGTATGTGC +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIREYQL*LELSMC
Trigger: GCACATACTCAGTTCCAACAACAACTGATACTCCCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGACCACTGTTTGGTTaGCGAGTATCCAGGAAATTG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIRPLFG*RVSRKL
Trigger: CAATTTCCTGGATACTCGCAAACCAAACAGTGGTCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTGCTTGTGTTCAATTTaGGCAGGTGTCAGTCTTAGG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKICLCSI*AGVSLR
Trigger: CCTAAGACTGACACCTGCCAAAATTGAACACAAGCA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGCCTTGCAGTCAACTaGGAAATCTTTCCCATGGAG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTSLAVN*EIFPME
Trigger: CTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGCCATCCCAACTTTGTaGAAATACAAGGTTCCGTTG +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGAIPTL*KYKVPL
Trigger: CAACGGAACCTTGTATTTCAACAAAGTTGGGATGGC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTGCCATCCCAACTTTGTaGAAATACAAGGTTCCGTTG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIAIPTL*KYKVPL
Trigger: CAACGGAACCTTGTATTTCAACAAAGTTGGGATGGC...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAAGAGACAATATCCAGTTaGTATGTCTTAGTGTCATCC +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQETISS*YVLVSS
Trigger: GGATGACACTAAGACATACAAACTGGATATTGTCTC...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTTGCATACAAACCATaGATTAATGGAGGCCTAGAG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQFAYKP*INGGLE
Trigger: CTCTAGGCCTCCATTAATCAATGGTTTGTATGCAAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCGCCGTGAGGAAAATATaGTCTGGCATAATCCATGTG +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGAVRKI*SGIIHV
Trigger: CACATGGATTATGCCAGACAATATTTTCCTCACGGC...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTCCAAGGTTCCATTTaGATGCACGGTGATTCTGCC +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAFQGSI*MHGDSA
Trigger: GGCAGAATCACCGTGCATCAAAATGGAACCTTGGAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTCATTGCTACAGGCTaGCCAACCTGGGCAACTACT +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHFIATG*PTWATT
Trigger: AGTAGTTGCCCAGGTTGGCAAGCCTGTAGCAATGAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACCTGGCGTAGTCCATTaGACATTTGGCTTAGGGATT +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAPGVVH*TFGLGI
Trigger: AATCCCTAAGCCAAATGTCAAATGGACTACGCCAGG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGGACCTGGATGTAAGTaGTTGCATAATCGGCACCAA +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAGPGCK*LHNRHQ
Trigger: TTGGTGCCGATTATGCAACAACTTACATCCAGGTCC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp CTCGATGTAGCCAACCTTATTTCTTGCTGTACAGCGATACTTTCCTaGCTTGTTCCGAGTTGCTTTGTAAACAATGAGAGAACCATTGCT +
Preference number: 5 (lower is better)
Translates to: LDVANLISCCTAILS*LVPSCFVNNERTIA
Trigger: AGCAATGGTTCTCTCATTGTTTACAAAGCAACTCGGAACAAGTCAGGAAAGTATCGCTGTACAGCAAGAAATAAGGTTGGCTACATCGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp AATATCTGCATCAGCATCATTGGTGCTTATGCAATGGTAAAGACCTaGATCAAAGGTATCAGCCATCTGGAGTTCCAACTTCCCCTTTTT +
Preference number: 5 (lower is better)
Translates to: NICISIIGAYAMVKT*IKGISHLEFQLPLF
Trigger: AAAAAGGGGAAGTTGGAACTCCAGATGGCTGATACCTTTGATGCAGGTCTTTACCATTGCATAAGCACCAATGATGCTGATGCAGATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 90 bp TTCTACATAGGGCTCTACCACAGTTATCCTGTATGTGAGAATATCTaGATCAGCATCATTGGTGCTTATGCAATGGTAAAGACCTGCATC +
Preference number: 5 (lower is better)
Translates to: FYIGLYHSYPVCENI*ISIIGAYAMVKTCI
Trigger: GATGCAGGTCTTTACCATTGCATAAGCACCAATGATGCTGATGCAGATATTCTCACATACAGGATAACTGTGGTAGAGCCCTATGTAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CAATATAGTCTTAGGCAGAGAGTCATAGGGCAGGTGTTTGGAAGTTaGGTTTTGAGCAGGTTTCTTATCAAAGACACTCTTTTCTGCATG +
Preference number: 5 (lower is better)
Translates to: QYSLRQRVIGQVFGS*VLSRFLIKDTLFCM
Trigger: CATGCAGAAAAGAGTGTCTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAAACACCTGCCCTATGACTCTCTGCCTAAGACTATATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTCTGTTATACCCTAAATaGACTCGTTCCACATTGGCT +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKILLYPK*TRSTLA
Trigger: AGCCAATGTGGAACGAGTCAATTTAGGGTATAACAG...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTCCAACTTCCCCTTTTaGTCTATTAGGATTCGCCCA +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSNFPF*SIRIRP
Trigger: TGGGCGAATCCTAATAGACAAAAAGGGGAAGTTGGA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGGACTGTATTGGCTTaGTTGGTGAAGCTACTAAGC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVRTVLA*LVKLLS
Trigger: GCTTAGTAGCTTCACCAACAAAGCCAATACAGTCCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGTCCATAACTTTCTGTaGGATTTGCTGACTGCAGGA +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAVHNFL*DLLTAG
Trigger: TCCTGCAGTCAGCAAATCCAACAGAAAGTTATGGAC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGGAAATAATCCCAACATaGTTAGCTTTGGGGAGGGTA +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKEIIPT*LALGRV
Trigger: TACCCTCCCCAAAGCTAACAATGTTGGGATTATTTC...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTGTGCTTGTTGCTTTaGTTGGTATTGAGGGTTGGC +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTALCLLL*LVLRVG
Trigger: GCCAACCCTCAATACCAACAAAAGCAACAAGCACAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTGAGAGTTTTGTGCTaGTTGCTTTTGTTGGTATTG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQLRVLC*LLLLVL
Trigger: CAATACCAACAAAAGCAACAAGCACAAAACTCTCAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTCTTCTTGAGAGTTTaGTGCTTGTTGCTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQFFLRV*CLLLLL
Trigger: CAACAAAAGCAACAAGCACAAAACTCTCAAGAAGAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTTAGCATCCCCTCTTaGTTATGGTTATTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQFSIPS*LWLFAK
Trigger: CTTTGCAAATAACCATAACAAAGAGGGGATGCTAAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGGGAGTATCAGTTGTaGTTGGAACTGAGTATGTGC +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAREYQL*LELSMC
Trigger: GCACATACTCAGTTCCAACAACAACTGATACTCCCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGCTGGCAATTTGGAAGTTGGGTTTaGAGCAGGTTTCTTATCAAA +
Preference number: 5 (lower is better)
Translates to: SVCDVCNIGGKQTQGSWQFGSWV*SRFLIK
Trigger: TTTGATAAGAAACCTGCTCAAAACCCAACTTCCAAA...TTGCCAGCTGCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGCAGGTGTTTGGAAGTaGGGTTTTGAGCAGGTTTCT +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHAGVWK*GFEQVS
Trigger: AGAAACCTGCTCAAAACCCAACTTCCAAACACCTGC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGACCACTGTTTGGTTaGCGAGTATCCAGGAAATTG +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVRPLFG*RVSRKL
Trigger: CAATTTCCTGGATACTCGCAAACCAAACAGTGGTCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAGGTCATCTCCCATTTaGTTTCTTGCCACACATAAG +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCRSSPI*FLATHK
Trigger: CTTATGTGTGGCAAGAAACAAAATGGGAGATGACCT...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGCTTGTGTTCAATTTaGGCAGGTGTCAGTCTTAGG +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTACLCSI*AGVSLR
Trigger: CCTAAGACTGACACCTGCCAAAATTGAACACAAGCA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGGGGAGCCAGAAGCCTaGCAGTCAACTTGGAAATCT +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVGEPEA*QSTWKS
Trigger: AGATTTCCAAGTTGACTGCAAGGCTTCTGGCTCCCC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCAAAATACATTTGGCTaGGGTTCCCCAGTGACCTCA +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHQNTFG*GSPVTS
Trigger: TGAGGTCACTGGGGAACCCAAGCCAAATGTATTTTG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTATCCCCACTAGGATTTaGAGCTACACACACATACTT +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIIPTRI*SYTHIL
Trigger: AAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGAT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGATTTGCATACAAACCATaGATTAATGGAGGCCTAGAG +
Preference number: 5 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRFAYKP*INGGLE
Trigger: CTCTAGGCCTCCATTAATCAATGGTTTGTATGCAAA...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGGACCTGGATGTAAGTaGTTGCATAATCGGCACCAA +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHGPGCK*LHNRHQ
Trigger: TTGGTGCCGATTATGCAACAACTTACATCCAGGTCC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp ATTCTTAAGGTCCCATTGTTAAGAATTTGCATGTCTCTTGATGACTaGGAGAACACAGTGTTCCGGGGAAGAATCCAGCTAATAGAAGCA +
Preference number: 5 (lower is better)
Translates to: ILKVPLLRICMSLDD*ENTVFRGRIQLIEA
Trigger: TGCTTCTATTAGCTGGATTCTTCCCCGGAACACTGTGTTCTCTCAGTCATCAAGAGACATGCAAATTCTTAACAATGGGACCTTAAGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp ACAATATCCAGTTTGTATGTCTTAGTGTCATCCCCACTAGGATTTTaGGCTACACACACATACTTCCCAGAGTCAAGCGGTTTCACTTTA +
Preference number: 5 (lower is better)
Translates to: TISSLYVLVSSPLGF*ATHTYFPESSGFTL
Trigger: TAAAGTGAAACCGCTTGACTCTGGGAAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGATGACACTAAGACATACAAACTGGATATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACTGTTATACCCTAAATaGACTCGTTCCACATTGGCT +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLLYPK*TRSTLA
Trigger: AGCCAATGTGGAACGAGTCAATTTAGGGTATAACAG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAAATCAGCCTCTATGTaGGTAAAAGTGTCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVKSASM*VKVSSG
Trigger: GCCTGAAGACACTTTTACCAACATAGAGGCTGATTT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTCCAACTTCCCCTTTTaGTCTATTAGGATTCGCCCA +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHSNFPF*SIRIRP
Trigger: TGGGCGAATCCTAATAGACAAAAAGGGGAAGTTGGA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTATGTATCCCAGAGACTaGTTTTCCAGCCTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVMYPRD*FSSLCP
Trigger: GGGACAGAGGCTGGAAAACAAGTCTCTGGGATACAT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTATCTTCTATCTTGCTaGTTACAGGTCGGTTCATAC +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIYLLSC*LQVGSY
Trigger: GTATGAACCGACCTGTAACAAGCAAGATAGAAGATA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGACCAGATTGGGTTTTGATGTGTaGTATCTTCTATCTTGCTTG +
Preference number: 5 (lower is better)
Translates to: CRTLSFAGWVADRKLKTRLGFDV*YLLSCL
Trigger: CAAGCAAGATAGAAGATACAACACATCAAAACCCAA...TCTGGTCTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAACTGTATTGGCTTTGTaGGTGAAGCTACTAAGCATG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTTVLAL*VKLLSM
Trigger: CATGCTTAGTAGCTTCACCAACAAAGCCAATACAGT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCACTGTATTGGCTTTGTaGGTGAAGCTACTAAGCATG +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVTVLAL*VKLLSM
Trigger: CATGCTTAGTAGCTTCACCAACAAAGCCAATACAGT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGGACTGTATTGGCTTaGTTGGTGAAGCTACTAAGC +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHRTVLA*LVKLLS
Trigger: GCTTAGTAGCTTCACCAACAAAGCCAATACAGTCCT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGTCCATAACTTTCTGTaGGATTTGCTGACTGCAGGA +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHVHNFL*DLLTAG
Trigger: TCCTGCAGTCAGCAAATCCAACAGAAAGTTATGGAC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAGAAATAATCCCAACATaGTTAGCTTTGGGGAGGGTA +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTEIIPT*LALGRV
Trigger: TACCCTCCCCAAAGCTAACAATGTTGGGATTATTTC...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGAGTTTTGTGCTTGTaGCTTTTGTTGGTATTGAGG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIRVLCL*LLLVLR
Trigger: CCTCAATACCAACAAAAGCAACAAGCACAAAACTCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCGGTTATTTGCAAAGATaGGGTGCCAGGGAATTTTTC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVGYLQR*GAREFF
Trigger: GAAAAATTCCCTGGCACCCAATCTTTGCAAATAACC...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGGTTATTTGCAAAGATaGGGTGCCAGGGAATTTTTC +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAGYLQR*GAREFF
Trigger: GAAAAATTCCCTGGCACCCAATCTTTGCAAATAACC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAGCACTAGGAAGGAGTaGATGAAGGGCTGCTCTTTC +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVSTRKE*MKGCSF
Trigger: GAAAGAGCAGCCCTTCATCAACTCCTTCCTAGTGCT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGTGGTCTTTTGCTTTTTaGGATCGTACTTCTTGGGTT +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKWSFAF*DRTSWV
Trigger: AACCCAAGAAGTACGATCCAAAAAAGCAAAAGACCA...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACTATTTGACATCATCTaGAAAACTGCTGGGACCTCA +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLFDII*KTAGTS
Trigger: TGAGGTCCCAGCAGTTTTCAAGATGATGTCAAATAG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGCTTATTTCTGGCCTTTaGCCCTTTTCAATGGTTTCT +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKLISGL*PFSMVS
Trigger: AGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAAG...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGACCACTGTTTGGTTaGCGAGTATCCAGGAAATTG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHRPLFG*RVSRKL
Trigger: CAATTTCCTGGATACTCGCAAACCAAACAGTGGTCT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCTCCCATTTTGTTTCTaGCCACACATAAGTAGTCAC +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVLPFCF*PHISSH
Trigger: GTGACTACTTATGTGTGGCAAGAAACAAAATGGGAG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp CTCTATTGCAGAACCTTGTCATTTGCTGGGTGGGTTGCAGATAGGAAATTAAAGTTTCCCATGGAGTACTaGCTTCTTAAAATGCTGCTT +
Preference number: 5 (lower is better)
Translates to: LYCRTLSFAGWVADRKLKFPMEY*LLKMLL
Trigger: AAGCAGCATTTTAAGAAGCAAGTACTCCATGGGAAA...CTTTAATTTCCTATCTGCAACCCACCCAGCAAATGACAAGGTTCTGCAATAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039419.12
CDS-3UTR CAA 90 bp GCTGCAAACCTAATCTTTCACGTTGTCTCCATTCATTCTGTGTGCGATGTTTGTTTTCCCATGGAGTACTaGCTTCTTAAAATGCTGCTT +
Preference number: 5 (lower is better)
Translates to: AANLIFHVVSIHSVCDVCFPMEY*LLKMLL
Trigger: AAGCAGCATTTTAAGAAGCAAGTACTCCATGGGAAA...ACAAACATCGCACACAGAATGAATGGAGACAACGTGAAAGATTAGGTTTGCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAATCCCCACTAGGATTTaGAGCTACACACACATACTT +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTIPTRI*SYTHIL
Trigger: AAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGAT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCACTGGCCAACGCTGTTTaGAGCCTTACAGATATAATT +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTALANAV*SLTDII
Trigger: AATTATATCTGTAAGGCTCAAAACAGCGTTGGCCAG...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 90 bp CATGCTTGTTTTCTACATAGGGCTCTACCACAGTTATCCTGTATGTaGGAATATCTGCATCAGCATCATTGGTGCTTATGCAATGGTAAA +
Preference number: 5 (lower is better)
Translates to: HACFLHRALPQLSCM*EYLHQHHWCLCNGK
Trigger: TTTACCATTGCATAAGCACCAATGATGCTGATGCAGATATTCTCACATACAGGATAACTGTGGTAGAGCCCTATGTAGAAAACAAGCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 90 bp CGATGTTTCTTATATACAGGGTCCCATTTGGATACAAGAAAAACCTaGAATGAGTCAACTGCAGTGGTTTTAGTTCAGTCCCATCATAGA +
Preference number: 5 (lower is better)
Translates to: RCFLYTGSHLDTRKT*NESTAVVLVQSHHR
Trigger: TCTATGATGGGACTGAACTAAAACCACTGCAGTTGACTCATTCCAGGTTTTTCTTGTATCCAAATGGGACCCTGTATATAAGAAACATCG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAAATCAGCCTCTATGTaGGTAAAAGTGTCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHKSASM*VKVSSG
Trigger: GCCTGAAGACACTTTTACCAACATAGAGGCTGATTT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACACTGTATTGGCTTTGTaGGTGAAGCTACTAAGCATG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHTVLAL*VKLLSM
Trigger: CATGCTTAGTAGCTTCACCAACAAAGCCAATACAGT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACAAGAGTTTTGTGCTTGTaGCTTTTGTTGGTATTGAGG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTRVLCL*LLLVLR
Trigger: CCTCAATACCAACAAAAGCAACAAGCACAAAACTCT...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTCTTCTTGAGAGTTTaGTGCTTGTTGCTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIFFLRV*CLLLLL
Trigger: CAACAAAAGCAACAAGCACAAAACTCTCAAGAAGAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTCTTCTTGAGAGTTTaGTGCTTGTTGCTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGFFLRV*CLLLLL
Trigger: CAACAAAAGCAACAAGCACAAAACTCTCAAGAAGAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCAGGGAATTTTTCTTCTaGAGAGTTTTGTGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGREFFF*RVLCLL
Trigger: CAACAAGCACAAAACTCTCAAGAAGAAAAATTCCCT...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAGGGAATTTTTCTTCTaGAGAGTTTTGTGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIREFFF*RVLCLL
Trigger: CAACAAGCACAAAACTCTCAAGAAGAAAAATTCCCT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTTTTAGCATCCCCTCTTaGTTATGGTTATTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKIFSIPS*LWLFAK
Trigger: CTTTGCAAATAACCATAACAAAGAGGGGATGCTAAA...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATGGTCTTTTGCTTTTTaGGATCGTACTTCTTGGGTT +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTWSFAF*DRTSWV
Trigger: AACCCAAGAAGTACGATCCAAAAAAGCAAAAGACCA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTCTTCAGAGACCCCTTaGTTTGGTCTTTTGCTTTTT +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSSETP*FGLLLF
Trigger: AAAAAGCAAAAGACCAAACAAAGGGGTCTCTGAAGA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCTATTTGACATCATCTaGAAAACTGCTGGGACCTCA +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLFDII*KTAGTS
Trigger: TGAGGTCCCAGCAGTTTTCAAGATGATGTCAAATAG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCCTTATTTCTGGCCTTTaGCCCTTTTCAATGGTTTCT +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVLISGL*PFSMVS
Trigger: AGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAAG...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACTTATTTCTGGCCTTTaGCCCTTTTCAATGGTTTCT +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTLISGL*PFSMVS
Trigger: AGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAAG...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACACAAGGCTTTGGAAGTTGGGTTTaGAGCAGGTTTCTTATCAAA +
Preference number: 5 (lower is better)
Translates to: SIHSVCDVCNIGGKQTQGFGSWV*SRFLIK
Trigger: TTTGATAAGAAACCTGCTCAAAACCCAACTTCCAAA...GCCTTGTGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACCTCCCATTTTGTTTCTaGCCACACATAAGTAGTCAC +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLPFCF*PHISSH
Trigger: GTGACTACTTATGTGTGGCAAGAAACAAAATGGGAG...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GACACAAGGCAGCTGGCAACTGTTAGCGGAAGAAAGGTCTTTTTACTGAAAATTAATGAAATGACATTGTaGGAAGGCAGCAACCAAAAT +
Preference number: 5 (lower is better)
Translates to: DTRQLATVSGRKVFLLKINEMTL*EGSNQN
Trigger: ATTTTGGTTGCTGCCTTCCAACAATGTCATTTCATT...AATTTTCAGTAAAAAGACCTTTCTTCCGCTAACAGTTGCCAGCTGCCTTGTGTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCAGCGGTTTCACTTTATaGATGGACAAAGTTCCATTG +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVSGFTL*MDKVPL
Trigger: CAATGGAACTTTGTCCATCAATAAAGTGAAACCGCT...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAAGCGGTTTCACTTTATaGATGGACAAAGTTCCATTG +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTASGFTL*MDKVPL
Trigger: CAATGGAACTTTGTCCATCAATAAAGTGAAACCGCT...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCAGAGACAATATCCAGTTaGTATGTCTTAGTGTCATCC +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAETISS*YVLVSS
Trigger: GGATGACACTAAGACATACAAACTGGATATTGTCTC...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GTTGTCTCCATTCATTCTGTGTGCGATGTTTGTAACATTGGTGGAAAACAGACATTTGCATACAAACCATaGATTAATGGAGGCCTAGAG +
Preference number: 5 (lower is better)
Translates to: VVSIHSVCDVCNIGGKQTFAYKP*INGGLE
Trigger: CTCTAGGCCTCCATTAATCAATGGTTTGTATGCAAA...TGTCTGTTTTCCACCAATGTTACAAACATCGCACACAGAATGAATGGAGACAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGTTCCAGTCTGGTATaGTTCATCATCAGAATCATG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHCSSLV*FIIRIM
Trigger: CATGATTCTGATGATGAACAATACCAGACTGGAACA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTGGGTTTTGATGTGTaGTATCTTCTATCTTGCTTG +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTALGFDV*YLLSCL
Trigger: CAAGCAAGATAGAAGATACAACACATCAAAACCCAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATGTCTTGGGTTTTGATGTGTaGTATCTTCTATCTTGCTTG +
Preference number: 5 (lower is better)
Translates to: WKLGISSQCIYLQVSLHVLGFDV*YLLSCL
Trigger: CAAGCAAGATAGAAGATACAACACATCAAAACCCAA...GACATGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTGAGAGTTTTGTGCTaGTTGCTTTTGTTGGTATTG +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTALRVLC*LLLLVL
Trigger: CAATACCAACAAAAGCAACAAGCACAAAACTCTCAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTGCATTTAGCATCCCCTCTTaGTTATGGTTATTTGCAAAG +
Preference number: 5 (lower is better)
Translates to: SMETRNQFTVHLFTSLTAFSIPS*LWLFAK
Trigger: CTTTGCAAATAACCATAACAAAGAGGGGATGCTAAA...TGCAGTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACGAGTATCAGTTGTTGTaGGAACTGAGTATGTGCTAT +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHEYQLL*ELSMCY
Trigger: ATAGCACATACTCAGTTCCAACAACAACTGATACTC...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGCGGTTTCACTTTATaGATGGACAAAGTTCCATTG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHSGFTL*MDKVPL
Trigger: CAATGGAACTTTGTCCATCAATAAAGTGAAACCGCT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGCCGTGAGGAAAATATaGTCTGGCATAATCCATGTG +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVAVRKI*SGIIHV
Trigger: CACATGGATTATGCCAGACAATATTTTCCTCACGGC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTCTGTTATACCCTAAATaGACTCGTTCCACATTGGCT +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVLLYPK*TRSTLA
Trigger: AGCCAATGTGGAACGAGTCAATTTAGGGTATAACAG...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTAAATCAGCCTCTATGTaGGTAAAAGTGTCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVKSASM*VKVSSG
Trigger: GCCTGAAGACACTTTTACCAACATAGAGGCTGATTT...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGAAATAATCCCAACATaGTTAGCTTTGGGGAGGGTA +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVEIIPT*LALGRV
Trigger: TACCCTCCCCAAAGCTAACAATGTTGGGATTATTTC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACTTGAGAGTTTTGTGCTaGTTGCTTTTGTTGGTATTG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHLRVLC*LLLLVL
Trigger: CAATACCAACAAAAGCAACAAGCACAAAACTCTCAA...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAGGGAATTTTTCTTCTaGAGAGTTTTGTGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHREFFF*RVLCLL
Trigger: CAACAAGCACAAAACTCTCAAGAAGAAAAATTCCCT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp GAAATCCATGGAAACTCGGAATCAGTTCACAGTGCATTTATTTACAAGTCTCACAATGAAATGACATTGTaGGAAGGCAGCAACCAAAAT +
Preference number: 5 (lower is better)
Translates to: EIHGNSESVHSAFIYKSHNEMTL*EGSNQN
Trigger: ATTTTGGTTGCTGCCTTCCAACAATGTCATTTCATT...GTGAGACTTGTAAATAAATGCACTGTGAACTGATTCCGAGTTTCCATGGATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGAGTATCAGTTGTTGTaGGAACTGAGTATGTGCTAT +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVEYQLL*ELSMCY
Trigger: ATAGCACATACTCAGTTCCAACAACAACTGATACTC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS-3UTR CAA 90 bp TTCAGGTGCATTCGCCATTTGTTAATTTGTAGCGGATCATTTTCTCTTAATGTTGAGACAATATCCAGTTaGTATGTCTTAGTGTCATCC +
Preference number: 5 (lower is better)
Translates to: FRCIRHLLICSGSFSLNVETISS*YVLVSS
Trigger: GGATGACACTAAGACATACAAACTGGATATTGTCTC...AACATTAAGAGAAAATGATCCGCTACAAATTAACAAATGGCGAATGCACCTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp GAGCAGGGAGTATCCCGGCGTCTCCCAGGTGATTTGTaGCTTGGGGACTCCCAAGGCCACACAGTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: EQGVSRRLPGDL*LGDSQGHTVEL
Trigger: CAGCTCCACTGTGTGGCCTTGGGAGTCCCCAAGCCACAAATCACCTGGGAGACGCCGGGATACTCCCTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GGGCTGCTCTTTCCCTGCAGAGAGACTTCTGGCACCTaGCACTTCAGTGCCATTGCGCCGAGTGGCAGCCAT +
Preference number: 6 (lower is better)
Translates to: GLLFPCRETSGT*HFSAIAPSGSH
Trigger: ATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTCTCTGCAGGGAAAGAGCAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GGCTGCTCTTTCCCTGCAGAGAGACTTCTGGCACCTTaGACTTCAGTGCCATTGCGCCGAGTGGCAGCCATT +
Preference number: 6 (lower is better)
Translates to: GCSFPAERLLAP*TSVPLRRVAAI
Trigger: AATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTCTCTGCAGGGAAAGAGCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TTCTGGCACCTTGCACTTCAGTGCCATTGCGCCGAGTaGCAGCCATTGTTGCAGACTGAGCTGGCGTCAGAC +
Preference number: 6 (lower is better)
Translates to: FWHLALQCHCAE*QPLLQTELASD
Trigger: GTCTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GCACTTCAGTGCCATTGCGCCGAGTGGCAGCCATTGTaGCAGACTGAGCTGGCGTCAGACTTGCCAAGAGTG +
Preference number: 6 (lower is better)
Translates to: ALQCHCAEWQPL*QTELASDLPRV
Trigger: CACTCTTGGCAAGTCTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TGTTGGGGGTCAATTCTCCGAGCAGAGAGAGGGAGCTaGCTCCTGTGTTCCCTGAATCTCCGGAGAGTGGAA +
Preference number: 6 (lower is better)
Translates to: CWGSILRAERGS*LLCSLNLRRVE
Trigger: TTCCACTCTCCGGAGATTCAGGGAACACAGGAGGCAGCTCCCTCTCTCTGCTCGGAGAATTGACCCCCAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp CACTTCAGTGCCATTGCGCCGAGTGGCAGCCATTGTTaGAGACTGAGCTGGCGTCAGACTTGCCAAGAGTGT +
Preference number: 6 (lower is better)
Translates to: HFSAIAPSGSHC*RLSWRQTCQEC
Trigger: ACACTCTTGGCAAGTCTGACGCCAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp CAGAGAGACTTCTGGCACCTTGCACTTCAGTGCCATTaGGCCGAGTGGCAGCCATTGTTGCAGACTGAGCTG +
Preference number: 6 (lower is better)
Translates to: QRDFWHLALQCH*AEWQPLLQTEL
Trigger: CAGCTCAGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTCTCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TCCCTGCAGAGAGACTTCTGGCACCTTGCACTTCAGTaGCATTGCGCCGAGTGGCAGCCATTGTTGCAGACT +
Preference number: 6 (lower is better)
Translates to: SLQRDFWHLALQ*HCAEWQPLLQT
Trigger: AGTCTGCAACAATGGCTGCCACTCGGCGCAATGGCACTGAAGTGCAAGGTGCCAGAAGTCTCTCTGCAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp ACCAGCGTACCTTGTAGGGGAAGCATCTCACTTCTGTaGGGCCTTCTTTCTGTCGCCGTTGAGAGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: TSVPCRGSISLL*GLLSVAVESRE
Trigger: CTCCCTGCTCTCAACGGCGACAGAAAGAAGGCCCCACAGAAGTGAGATGCTTCCCCTACAAGGTACGCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GTCCTGATGAGACTCTGGTCCAGTGGATGGTGGGCTTaGGGTCTCCAACAGCCTCGCAAGGAAGAAGGACAT +
Preference number: 6 (lower is better)
Translates to: VLMRLWSSGWWA*GLQQPRKEEGH
Trigger: ATGTCCTTCTTCCTTGCGAGGCTGTTGGAGACCCAAAGCCCACCATCCACTGGACCAGAGTCTCATCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TTTTCTGCATGCCTCTGTGCATTCCAATGCAAGGCATaGGTGCTGGCCTCTGGAAAGCTGAGGTGGGGTGAC +
Preference number: 6 (lower is better)
Translates to: FSACLCAFQCKA*VLASGKLRWGD
Trigger: GTCACCCCACCTCAGCTTTCCAGAGGCCAGCACTCATGCCTTGCATTGGAATGCACAGAGGCATGCAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp CCGAAGTATGAGTGCATTTCTGGGGCAGTTCAGTTATaGCCAGGAGAGAAGCTGCTGAGTGAGGAGCAGCTG +
Preference number: 6 (lower is better)
Translates to: PKYECISGAVQL*PGEKLLSEEQL
Trigger: CAGCTGCTCCTCACTCAGCAGCTTCTCTCCTGGGCATAACTGAACTGCCCCAGAAATGCACTCATACTTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GGAGTGGTGGTGTGGCGGAGGCTCTTTTCATTGCGGTaGTCTCCTGTGATTTGCTCAACAGAGTTGTTTCCG +
Preference number: 6 (lower is better)
Translates to: GVVVWRRLFSLR*SPVICSTELFP
Trigger: CGGAAACAACTCTGTTGAGCAAATCACAGGAGAGCACCGCAATGAAAAGAGCCTCCGCCACACCACCACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp CTCACTTTACTCCCATCAGCTAAAACCCATTCCAAGTaGGGTGAAGGGTCACCTTTGCCCGGACAGTCCAGG +
Preference number: 6 (lower is better)
Translates to: LTLLPSAKTHSK*GEGSPLPGQSR
Trigger: CCTGGACTGTCCGGGCAAAGGTGACCCTTCACCTCACTTGGAATGGGTTTTAGCTGATGGGAGTAAAGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp GGCAGTTCAGTTATGCCCAGGAGAGAAGCTGCTGAGTaGGGAGCAGCTGTACTTACAGTCCTACCAGTGACT +
Preference number: 6 (lower is better)
Translates to: GSSVMPRREAAE*GAAVLTVLPVT
Trigger: AGTCACTGGTAGGACTGTAAGTACAGCTGCTCCTCACTCAGCAGCTTCTCTCCTGGGCATAACTGAACTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp ATATTTCACGTCCTGATGAGACTCTGGTCCAGTGGATaGTGGGCTTTGGGTCTCCAACAGCCTCGCAAGGAA +
Preference number: 6 (lower is better)
Translates to: IFHVLMRLWSSG*WALGLQQPRKE
Trigger: TTCCTTGCGAGGCTGTTGGAGACCCAAAGCCCACCATCCACTGGACCAGAGTCTCATCAGGACGTGAAATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TTAGTTCAGTCCCATCATAGAGGACCCAATGAACACTaGGCTGGGGAGTTCCCTTTGCAGTGCAGGGCAGTT +
Preference number: 6 (lower is better)
Translates to: LVQSHHRGPNEH*AGEFPLQCRAV
Trigger: AACTGCCCTGCACTGCAAAGGGAACTCCCCAGCCCAGTGTTCATTGGGTCCTCTATGATGGGACTGAACTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GTGAGGCTGTTATACCCTAAATTGACTCGTTCCACATaGGCTGGGATGCCGTCTGGGATGGAGGTCAGGTAC +
Preference number: 6 (lower is better)
Translates to: VRLLYPKLTRST*AGMPSGMEVRY
Trigger: GTACCTGACCTCCATCCCAGACGGCATCCCAGCCAATGTGGAACGAGTCAATTTAGGGTATAACAGCCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
ENSMUST00000195983.2
CDS CAA 72 bp AGGGGAAAGTCAGTGGATCCAGTTAAGATCTCAGGATaGGGGCTAGCCTCTGCTGAGGGTTGCTGCAGATCT +
Preference number: 6 (lower is better)
Translates to: RGKSVDPVKISG*GLASAEGCCRS
Trigger: AGATCTGCAGCAACCCTCAGCAGAGGCTAGCCCCAATCCTGAGATCTTAACTGGATCCACTGACTTTCCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp TCCCATCATAGAGGACCCAATGAACACTGGGCTGGGGAGTTCCCTTaGCAGTGCAGGGCAGTTTCAAACTTTCACCTAAAACGCCAACGA +
Preference number: 6 (lower is better)
Translates to: SHHRGPNEHWAGEFP*QCRAVSNFHLKRQR
Trigger: TCGTTGGCGTTTTAGGTGAAAGTTTGAAACTGCCCTGCACTGCAAAGGGAACTCCCCAGCCCAGTGTTCATTGGGTCCTCTATGATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp GTGGAAGAGGGTGTACCTCTTGGTCCTGTAGCCACTGTCATCAGCTaGTGCTACATTGTTCACCACTGTTCCATCAGGCAAACTCCAGGA +
Preference number: 6 (lower is better)
Translates to: VEEGVPLGPVATVIS*CYIVHHCSIRQTPG
Trigger: TCCTGGAGTTTGCCTGATGGAACAGTGGTGAACAATGTAGCACAAGCTGATGACAGTGGCTACAGGACCAAGAGGTACACCCTCTTCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp AGAACAGGTTCGGCACATCCCAGGGGGCTCCGTGGCTaGAACTTGACTTATATTTCTGTTAGCAGGTCCCTT +
Preference number: 6 (lower is better)
Translates to: RTGSAHPRGLRG*NLTYISVSRSL
Trigger: AAGGGACCTGCTAACAGAAATATAAGTCAAGTTTCAGCCACGGAGCCCCCTGGGATGTGCCGAACCTGTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GCTTCCCTCGGGTGTTTCCGAGACCACTGTTTGGTTTaGGAGTATCCAGGAAATTGTAGGTCTTGGCATACC +
Preference number: 6 (lower is better)
Translates to: ASLGCFRDHCLV*EYPGNCRSWHT
Trigger: GGTATGCCAAGACCTACAATTTCCTGGATACTCGCAAACCAAACAGTGGTCTCGGAAACACCCGAGGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp CCCAATGAACACTGGGCTGGGGAGTTCCCTTTGCAGTaGAGGGCAGTTTCAAACTTTCACCTAAAACGCCAA +
Preference number: 6 (lower is better)
Translates to: PNEHWAGEFPLQ*RAVSNFHLKRQ
Trigger: TTGGCGTTTTAGGTGAAAGTTTGAAACTGCCCTGCACTGCAAAGGGAACTCCCCAGCCCAGTGTTCATTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp ATAATCCCAACATTGTTAGCTTTGGGGAGGGTAGTGTaGGATGAGCCTGTAACTGACAGTGCTGCCGTAGCC +
Preference number: 6 (lower is better)
Translates to: IIPTLLALGRVV*DEPVTDSAAVA
Trigger: GGCTACGGCAGCACTGTCAGTTACAGGCTCATCCCACACTACCCTCCCCAAAGCTAACAATGTTGGGATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp CCATTGAGAATCCTGTGGTTTATCCACTCTTGGTGCTaGCATAGGAGTGGAGGTCAACAGACTAGAGAGGGG +
Preference number: 6 (lower is better)
Translates to: PLRILWFIHSWC*HRSGGQQTREG
Trigger: CCCCTCTCTAGTCTGTTGACCTCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TTCTGGCCAGGGAGAAGGCTTCCATTGAGAATCCTGTaGTTTATCCACTCTTGGTGCTGGCATAGGAGTGGA +
Preference number: 6 (lower is better)
Translates to: FWPGRRLPLRIL*FIHSWCWHRSG
Trigger: TCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGGAAGCCTTCTCCCTGGCCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp GTGAGGAAAATATTGTCTGGCATAATCCATGTGATCTaGGGTGGTGGGACCCCATCTGCTCTGCAGTCCAAG +
Preference number: 6 (lower is better)
Translates to: VRKILSGIIHVI*GGGTPSALQSK
Trigger: CTTGGACTGCAGAGCAGATGGGGTCCCACCACCCCAGATCACATGGATTATGCCAGACAATATTTTCCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TCCACCGACTTGAGGTCTGTCGATTACAAGGCCACCTaGCGTAGTCCATTTGACATTTGGCTTAGGGATTCC +
Preference number: 6 (lower is better)
Translates to: STDLRSVDYKAT*RSPFDIWLRDS
Trigger: GGAATCCCTAAGCCAAATGTCAAATGGACTACGCCAGGTGGCCTTGTAATCGACAGACCTCAAGTCGGTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GGTCCCTTGAGTGCTGGCCTCACAATCCTGTGTCTATaGCGACGGAGAACTGGAGTTCTATATGGACTTATA +
Preference number: 6 (lower is better)
Translates to: GPLSAGLTILCL*RRRTGVLYGLI
Trigger: TATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCATAGACACAGGATTGTGAGGCCAGCACTCAAGGGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TTCAGGTGTTGGGTTCCCATCCACAGAGCAGTTCATTaGTACAGGCTTGCCAACCTGGGCAACTACTTTTTC +
Preference number: 6 (lower is better)
Translates to: FRCWVPIHRAVH*YRLANLGNYFF
Trigger: GAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGTAGCAATGAACTGCTCTGTGGATGGGAACCCAACACCTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TTGACATTTGGCTTAGGGATTCCATCAGACACACAATaGAGGGATAGCGATTCCCCACCGGCGCTCTTTATC +
Preference number: 6 (lower is better)
Translates to: LTFGLGIPSDTQ*RDSDSPPALFI
Trigger: GATAAAGAGCGCCGGTGGGGAATCGCTATCCCTGCATTGTGTGTCTGATGGAATCCCTAAGCCAAATGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp CCTGTGTCTATGCCGACGGAGAACTGGAGTTCTATATaGACTTATAGCTCGCCCTCTGCTCCAAATTGTCCT +
Preference number: 6 (lower is better)
Translates to: PVSMPTENWSSI*TYSSPSAPNCP
Trigger: AGGACAATTTGGAGCAGAGGGCGAGCTATAAGTCCATATAGAACTCCAGTTCTCCGTCGGCATAGACACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GGTGTACCTCTTGGTCCTGTAGCCACTGTCATCAGCTaGTGCTACATTGTTCACCACTGTTCCATCAGGCAA +
Preference number: 6 (lower is better)
Translates to: GVPLGPVATVIS*CYIVHHCSIRQ
Trigger: TTGCCTGATGGAACAGTGGTGAACAATGTAGCACAAGCTGATGACAGTGGCTACAGGACCAAGAGGTACACC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp AGCCTCTATGTTGGTAAAAGTGTCTTCAGGCCTAAGAGCCACCTGTaGATATTTGGGAGACAGCAGTGGAGTCTCAGTATGCTGGGGCTT +
Preference number: 6 (lower is better)
Translates to: SLYVGKSVFRPKSHL*IFGRQQWSLSMLGL
Trigger: AAGCCCCAGCATACTGAGACTCCACTGCTGTCTCCCAAATATCAACAGGTGGCTCTTAGGCCTGAAGACACTTTTACCAACATAGAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp ACCACAGTGGTAGACTCTTCTGAAATAATCCCAACATTGTTAGCTTaGGGGAGGGTAGTGTGGGATGAGCCTGTAACTGACAGTGCTGCC +
Preference number: 6 (lower is better)
Translates to: TTVVDSSEIIPTLLA*GRVVWDEPVTDSAA
Trigger: GGCAGCACTGTCAGTTACAGGCTCATCCCACACTACCCTCCCCAAAGCTAACAATGTTGGGATTATTTCAGAAGAGTCTACCACTGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp AGGGGGAGCTGTGATGACTTGTATCTTAACCAACAGTaGATCCTGGCCAGATGGGTTGTTGGCTACACACTT +
Preference number: 6 (lower is better)
Translates to: RGSCDDLYLNQQ*ILARWVVGYTL
Trigger: AAGTGTGTAGCCAACAACCCATCTGGCCAGGATTCACTGTTGGTTAAGATACAAGTCATCACAGCTCCCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp AATTTGAAATCAGGAAGGTGCGTGGGTAGTAGTGTTTaGGGATTCACGGTGGAGGAGACTTCTGTGCCAGAA +
Preference number: 6 (lower is better)
Translates to: NLKSGRCVGSSV*GFTVEETSVPE
Trigger: TTCTGGCACAGAAGTCTCCTCCACCGTGAATCCGCAAACACTACTACCCACGCACCTTCCTGATTTCAAATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GTACCTCTTGGTCCTGTAGCCACTGTCATCAGCTTGTaGTACATTGTTCACCACTGTTCCATCAGGCAAACT +
Preference number: 6 (lower is better)
Translates to: VPLGPVATVISL*YIVHHCSIRQT
Trigger: AGTTTGCCTGATGGAACAGTGGTGAACAATGTAGCACAAGCTGATGACAGTGGCTACAGGACCAAGAGGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp AGGGTAGGCCACAATCGTCACGGGAACACTAATAACTaGCTGGCCAACGCTGTTTTGAGCCTTACAGATATA +
Preference number: 6 (lower is better)
Translates to: RVGHNRHGNTNN*LANAVLSLTDI
Trigger: TATATCTGTAAGGCTCAAAACAGCGTTGGCCAGGCAGTTATTAGTGTTCCCGTGACGATTGTGGCCTACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp AGGCTTCCATTGAGAATCCTGTGGTTTATCCACTCTTaGTGCTGGCATAGGAGTGGAGGTCAACAGACTAGA +
Preference number: 6 (lower is better)
Translates to: RLPLRILWFIHS*CWHRSGGQQTR
Trigger: TCTAGTCTGTTGACCTCCACTCCTATGCCAGCACCAAGAGTGGATAAACCACAGGATTCTCAATGGAAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp AATACAAGGTTCCGTTGTGGAAGAGGGTGTACCTCTTaGTCCTGTAGCCACTGTCATCAGCTTGTGCTACAT +
Preference number: 6 (lower is better)
Translates to: NTRFRCGRGCTS*SCSHCHQLVLH
Trigger: ATGTAGCACAAGCTGATGACAGTGGCTACAGGACCAAGAGGTACACCCTCTTCCACAACGGAACCTTGTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp GATTACAAGGCCACCTGGCGTAGTCCATTTGACATTTaGCTTAGGGATTCCATCAGACACACAATGCAGGGA +
Preference number: 6 (lower is better)
Translates to: DYKATWRSPFDI*LRDSIRHTMQG
Trigger: TCCCTGCATTGTGTGTCTGATGGAATCCCTAAGCCAAATGTCAAATGGACTACGCCAGGTGGCCTTGTAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp AAGCTGAGGTGGGGTGACAGGCTTATTTCTGGCCTTTaGCCCTTTTCAATGGTTTCTGAGTATGACCTGAGC +
Preference number: 6 (lower is better)
Translates to: KLRWGDRLISGL*PFSMVSEYDLS
Trigger: GCTCAGGTCATACTCAGAAACCATTGAAAAGGGCAAAAGGCCAGAAATAAGCCTGTCACCCCACCTCAGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GGTCTGTCGATTACAAGGCCACCTGGCGTAGTCCATTaGACATTTGGCTTAGGGATTCCATCAGACACACAA +
Preference number: 6 (lower is better)
Translates to: GLSITRPPGVVH*TFGLGIPSDTQ
Trigger: TTGTGTGTCTGATGGAATCCCTAAGCCAAATGTCAAATGGACTACGCCAGGTGGCCTTGTAATCGACAGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp TTAGGCGGACATGCATCAGGACCAGGTCATCTCCCATTTTGTTTCTaGCCACACATAAGTAGTCACCACCATCCTTTTCTGTCACCGATC +
Preference number: 6 (lower is better)
Translates to: LGGHASGPGHLPFCF*PHISSHHHPFLSPI
Trigger: GATCGGTGACAGAAAAGGATGGTGGTGACTACTTATGTGTGGCAAGAAACAAAATGGGAGATGACCTGGTCCTGATGCATGTCCGCCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp AATGAAATGACATTGTTGGAAGGCAGCAACCAAAATACATTTGGCTaGGGTTCCCCAGTGACCTCACAGTCCAGGACAGCTGTGTCTCCA +
Preference number: 6 (lower is better)
Translates to: NEMTLLEGSNQNTFG*GSPVTSQSRTAVSP
Trigger: TGGAGACACAGCTGTCCTGGACTGTGAGGTCACTGGGGAACCCAAGCCAAATGTATTTTGGTTGCTGCCTTCCAACAATGTCATTTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp CGCAGAATCAGAAAGCCTTATGTTCCGAATTTCCAAGGTTCCATTTaGATGCACGGTGATTCTGCCTCCGTAGTATGGAGCCGTGAGGAA +
Preference number: 6 (lower is better)
Translates to: RRIRKPYVPNFQGSI*MHGDSASVVWSREE
Trigger: TTCCTCACGGCTCCATACTACGGAGGCAGAATCACCGTGCATCAAAATGGAACCTTGGAAATTCGGAACATAAGGCTTTCTGATTCTGCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp AGGGCAATAGTGCCGCCAACCAAAACAGTATGTTCCAGTCTGGTATaGTTCATCATCAGAATCATGGTCCATTTGCGTTTCACCGGTCTC +
Preference number: 6 (lower is better)
Translates to: RAIVPPTKTVCSSLV*FIIRIMVHLRFTGL
Trigger: GAGACCGGTGAAACGCAAATGGACCATGATTCTGATGATGAACAATACCAGACTGGAACATACTGTTTTGGTTGGCGGCACTATTGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp AGACAAGGAGCCAAAAGGTTCTATGAAATCTTGAGGTaGGACGGAGGCAGATCCATTGTCCTCCTGAATACC +
Preference number: 6 (lower is better)
Translates to: RQGAKRFYEILR*DGGRSIVLLNT
Trigger: GGTATTCAGGAGGACAATGGATCTGCCTCCGTCTCACCTCAAGATTTCATAGAACCTTTTGGCTCCTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TTGGTAAAAGTGTCTTCAGGCCTAAGAGCCACCTGTTaGTATTTGGGAGACAGCAGTGGAGTCTCAGTATGC +
Preference number: 6 (lower is better)
Translates to: LVKVSSGLRATC*YLGDSSGVSVC
Trigger: GCATACTGAGACTCCACTGCTGTCTCCCAAATATCAACAGGTGGCTCTTAGGCCTGAAGACACTTTTACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp AGAGACTTGTTTTCCAGCCTCTGTCCCTGTCAAAGATaGTGCAGGGAGTTTCAAAGATGGTGGCTGCTTAAG +
Preference number: 6 (lower is better)
Translates to: RDLFSSLCPCQR*CREFQRWWLLK
Trigger: CTTAAGCAGCCACCATCTTTGAAACTCCCTGCATCATCTTTGACAGGGACAGAGGCTGGAAAACAAGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp ACTGAAAGCCAAGGGAGTATCAGTTGTTGTTGGAACTaGGTATGTGCTATAGCCAGAAATCTGCCTGGGGGT +
Preference number: 6 (lower is better)
Translates to: TESQGSISCCWN*VCAIARNLPGG
Trigger: ACCCCCAGGCAGATTTCTGGCTATAGCACATACTCAGTTCCAACAACAACTGATACTCCCTTGGCTTTCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GTCAAAGATGATGCAGGGAGTTTCAAAGATGGTGGCTaGTTAAGGAGAACACTGGGCTTGGGTTCTTCAAGT +
Preference number: 6 (lower is better)
Translates to: VKDDAGSFKDGG*LRRTLGLGSSS
Trigger: ACTTGAAGAACCCAAGCCCAGTGTTCTCCTTAAGCAGCCACCATCTTTGAAACTCCCTGCATCATCTTTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GTAGTGTTTGCGGATTCACGGTGGAGGAGACTTCTGTaGCAGAAGCTGAACTTGTCACAAAGCCATGATTTA +
Preference number: 6 (lower is better)
Translates to: VVFADSRWRRLL*QKLNLSQSHDL
Trigger: TAAATCATGGCTTTGTGACAAGTTCAGCTTCTGGCACAGAAGTCTCCTCCACCGTGAATCCGCAAACACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TCCCAGGGATATGGATGTTGGAGCAGAAATCATGCTTaGTTCAGTGGGAGTCATGTGGGTACTTTCACTTCT +
Preference number: 6 (lower is better)
Translates to: SQGYGCWSRNHA*FSGSHVGTFTS
Trigger: AGAAGTGAAAGTACCCACATGACTCCCACTGAAGCAAGCATGATTTCTGCTCCAACATCCATATCCCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp ATCTCAGGATTGGGGCTAGCCTCTGCTGAGGGTTGCTaGAGATCTATATCGTGCCTTGAAGATTCATATATG +
Preference number: 6 (lower is better)
Translates to: ISGLGLASAEGC*RSISCLEDSYM
Trigger: CATATATGAATCTTCAAGGCACGATATAGATCTGCAGCAACCCTCAGCAGAGGCTAGCCCCAATCCTGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TTTCTTATCAAAGACACTCTTTTCTGCATGCCTCTGTaGATTCCAATGCAAGGCATGAGTGCTGGCCTCTGG +
Preference number: 6 (lower is better)
Translates to: FLIKDTLFCMPL*IPMQGMSAGLW
Trigger: CCAGAGGCCAGCACTCATGCCTTGCATTGGAATGCACAGAGGCATGCAGAAAAGAGTGTCTTTGATAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp AGGAGAGTCACTGTACAAAGCCAGGAGTTGCCACACTaGCTGGATGTGATTATAATTGACACTGCACACAAG +
Preference number: 6 (lower is better)
Translates to: RRVTVQSQELPH*LDVIIIDTAHK
Trigger: CTTGTGTGCAGTGTCAATTATAATCACATCCAGCCAGTGTGGCAACTCCTGGCTTTGTACAGTGACTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GATAGCTCAAAGAGACAAATGTGTCTGGATGGAGCTTaGTCAGCCGGTTTCCTTCTAGATGTACCAAGCGGA +
Preference number: 6 (lower is better)
Translates to: DSSKRQMCLDGA*SAGFLLDVPSG
Trigger: TCCGCTTGGTACATCTAGAAGGAAACCGGCTGACAAAGCTCCATCCAGACACATTTGTCTCTTTGAGCTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GTTGGTAAAAGTGTCTTCAGGCCTAAGAGCCACCTGTaGATATTTGGGAGACAGCAGTGGAGTCTCAGTATG +
Preference number: 6 (lower is better)
Translates to: VGKSVFRPKSHL*IFGRQQWSLSM
Trigger: CATACTGAGACTCCACTGCTGTCTCCCAAATATCAACAGGTGGCTCTTAGGCCTGAAGACACTTTTACCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp ACCACAGTGGTAGACTCTTCTGAAATAATCCCAACATaGTTAGCTTTGGGGAGGGTAGTGTGGGATGAGCCT +
Preference number: 6 (lower is better)
Translates to: TTVVDSSEIIPT*LALGRVVWDEP
Trigger: AGGCTCATCCCACACTACCCTCCCCAAAGCTAACAATGTTGGGATTATTTCAGAAGAGTCTACCACTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp AGTCTTAGGCAGAGAGTCATAGGGCAGGTGTTTGGAAGTTGGGTTTaGAGCAGGTTTCTTATCAAAGACACTCTTTTCTGCATGCCTCTG +
Preference number: 6 (lower is better)
Translates to: SLRQRVIGQVFGSWV*SRFLIKDTLFCMPL
Trigger: CAGAGGCATGCAGAAAAGAGTGTCTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAAACACCTGCCCTATGACTCTCTGCCTAAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp GAAGGGCGCTTGGAGAAGCCTGGATCTTTAGTAGTGTaGGCCAAGGAGTTATTACTGCTAACTCTACTTACT +
Preference number: 6 (lower is better)
Translates to: EGRLEKPGSLVV*AKELLLLTLLT
Trigger: AGTAAGTAGAGTTAGCAGTAATAACTCCTTGGCTCACACTACTAAAGATCCAGGCTTCTCCAAGCGCCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp AGAGTTGTTTCCGAAGCTGTTATATTTCCCGAAGTATaGGTGCATTTCTGGGGCAGTTCAGTTATGCCCAGG +
Preference number: 6 (lower is better)
Translates to: RVVSEAVIFPEV*VHFWGSSVMPR
Trigger: CCTGGGCATAACTGAACTGCCCCAGAAATGCACTCATACTTCGGGAAATATAACAGCTTCGGAAACAACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TTTTTCCCAGGGATATGGATGTTGGAGCAGAAATCATaGTTGCTTCAGTGGGAGTCATGTGGGTACTTTCAC +
Preference number: 6 (lower is better)
Translates to: FFPGIWMLEQKS*LLQWESCGYFH
Trigger: GTGAAAGTACCCACATGACTCCCACTGAAGCAAGCATGATTTCTGCTCCAACATCCATATCCCTGGGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TTGTTTCCGAAGCTGTTATATTTCCCGAAGTATGAGTaGATTTCTGGGGCAGTTCAGTTATGCCCAGGAGAG +
Preference number: 6 (lower is better)
Translates to: LFPKLLYFPKYE*ISGAVQLCPGE
Trigger: CTCTCCTGGGCATAACTGAACTGCCCCAGAAATGCACTCATACTTCGGGAAATATAACAGCTTCGGAAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TTCTGCGAGGCAGTTTCTATCCTGGGAACTGTCTCTTaGTCTTCTACTCTTAGAATCACTACCCTTCTCTCT +
Preference number: 6 (lower is better)
Translates to: FCEAVSILGTVS*SSTLRITTLLS
Trigger: AGAGAGAAGGGTAGTGATTCTAAGAGTAGAAGAGCAAGAGACAGTTCCCAGGATAGAAACTGCCTCGCAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp AGTAATTTCTCACCCAAATTCACCTCTGTCCATTTCTaGGAGGCAGTTTCTATCCTGGGAACTGTCTCTTGC +
Preference number: 6 (lower is better)
Translates to: SNFSPKFTSVHF*EAVSILGTVSC
Trigger: GCAAGAGACAGTTCCCAGGATAGAAACTGCCTCGCAGAAATGGACAGAGGTGAATTTGGGTGAGAAATTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp TGTTCAATTTTGGCAGGTGTCAGTCTTAGGCGGACATaGATCAGGACCAGGTCATCTCCCATTTTGTTTCTT +
Preference number: 6 (lower is better)
Translates to: CSILAGVSLRRT*IRTRSSPILFL
Trigger: AAGAAACAAAATGGGAGATGACCTGGTCCTGATGCATGTCCGCCTAAGACTGACACCTGCCAAAATTGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp AGTTTTGTGCTTGTTGCTTTTGTTGGTATTGAGGGTTaGCTAAGTGGACTGGAAAGTGGTGGTGTCACCACT +
Preference number: 6 (lower is better)
Translates to: SFVLVAFVGIEG*LSGLESGGVTT
Trigger: AGTGGTGACACCACCACTTTCCAGTCCACTTAGCCAACCCTCAATACCAACAAAAGCAACAAGCACAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TCCATTTTGATGCACGGTGATTCTGCCTCCGTAGTATaGAGCCGTGAGGAAAATATTGTCTGGCATAATCCA +
Preference number: 6 (lower is better)
Translates to: SILMHGDSASVV*SREENIVWHNP
Trigger: TGGATTATGCCAGACAATATTTTCCTCACGGCTCCATACTACGGAGGCAGAATCACCGTGCATCAAAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GTAGACTCTTCTGAAATAATCCCAACATTGTTAGCTTaGGGGAGGGTAGTGTGGGATGAGCCTGTAACTGAC +
Preference number: 6 (lower is better)
Translates to: VDSSEIIPTLLA*GRVVWDEPVTD
Trigger: GTCAGTTACAGGCTCATCCCACACTACCCTCCCCAAAGCTAACAATGTTGGGATTATTTCAGAAGAGTCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp CATGCATCAGGACCAGGTCATCTCCCATTTTGTTTCTaGCCACACATAAGTAGTCACCACCATCCTTTTCTG +
Preference number: 6 (lower is better)
Translates to: HASGPGHLPFCF*PHISSHHHPFL
Trigger: CAGAAAAGGATGGTGGTGACTACTTATGTGTGGCAAGAAACAAAATGGGAGATGACCTGGTCCTGATGCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp AGAAAGCCTTATGTTCCGAATTTCCAAGGTTCCATTTaGATGCACGGTGATTCTGCCTCCGTAGTATGGAGC +
Preference number: 6 (lower is better)
Translates to: RKPYVPNFQGSI*MHGDSASVVWS
Trigger: GCTCCATACTACGGAGGCAGAATCACCGTGCATCAAAATGGAACCTTGGAAATTCGGAACATAAGGCTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp CACGGGAACACTAATAACTGCCTGGCCAACGCTGTTTaGAGCCTTACAGATATAATTTCCTCTGTCATGAGC +
Preference number: 6 (lower is better)
Translates to: HGNTNNCLANAV*SLTDIISSVMS
Trigger: GCTCATGACAGAGGAAATTATATCTGTAAGGCTCAAAACAGCGTTGGCCAGGCAGTTATTAGTGTTCCCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp CACAATCGTCACGGGAACACTAATAACTGCCTGGCCAACGCTGTTTaGAGCCTTACAGATATAATTTCCTCTGTCATGAGCTGTTGTTTC +
Preference number: 6 (lower is better)
Translates to: HNRHGNTNNCLANAV*SLTDIISSVMSCCF
Trigger: GAAACAACAGCTCATGACAGAGGAAATTATATCTGTAAGGCTCAAAACAGCGTTGGCCAGGCAGTTATTAGTGTTCCCGTGACGATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TGTTGTTGTGATCCAGGTGCAACCGGGTCAAGCTCCTaGGTCCATACAAAGTATCCTTCTCAATTATTTGGA +
Preference number: 6 (lower is better)
Translates to: CCCDPGATGSSS*VHTKYPSQLFG
Trigger: TCCAAATAATTGAGAAGGATACTTTGTATGGACTCAGGAGCTTGACCCGGTTGCACCTGGATCACAACAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp CTGTCATGTTCAAAGACAAGGAGCCAAAAGGTTCTATaGAATCTTGAGGTGAGACGGAGGCAGATCCATTGT +
Preference number: 6 (lower is better)
Translates to: LSCSKTRSQKVL*NLEVRRRQIHC
Trigger: ACAATGGATCTGCCTCCGTCTCACCTCAAGATTTCATAGAACCTTTTGGCTCCTTGTCTTTGAACATGACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TGCGTTTCACCGGTCTCATCTCTGCCTTTGGTAAAGTaGTTTGAGCATCCGTGGAAAATTGGATCTGTAATG +
Preference number: 6 (lower is better)
Translates to: CVSPVSSLPLVK*FEHPWKIGSVM
Trigger: CATTACAGATCCAATTTTCCACGGATGCTCAAATCACTTTACCAAAGGCAGAGATGAGACCGGTGAAACGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp GTCCCATTGTTAAGAATTTGCATGTCTCTTGATGACTaGGAGAACACAGTGTTCCGGGGAAGAATCCAGCTA +
Preference number: 6 (lower is better)
Translates to: VPLLRICMSLDD*ENTVFRGRIQL
Trigger: TAGCTGGATTCTTCCCCGGAACACTGTGTTCTCTCAGTCATCAAGAGACATGCAAATTCTTAACAATGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp CTTCCCACGTTACCTGTACTGTTGTTTCTAGGAGTTTaGAATAAAGAAGGGGCAGTGGTGTGGGAATCTGAA +
Preference number: 6 (lower is better)
Translates to: LPTLPVLLFLGV*NKEGAVVWESE
Trigger: TTCAGATTCCCACACCACTGCCCCTTCTTTATTTCAAACTCCTAGAAACAACAGTACAGGTAACGTGGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TGTAAAAACCACGGTCATAAAGACTCAAATTATGGATaGTCAACGTTCCATCGGGTGTCACCCAGACCTTCC +
Preference number: 6 (lower is better)
Translates to: CKNHGHKDSNYG*STFHRVSPRPS
Trigger: GGAAGGTCTGGGTGACACCCGATGGAACGTTGATCATCCATAATTTGAGTCTTTATGACCGTGGTTTTTACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp AGTTTGTATGTCTTAGTGTCATCCCCACTAGGATTTTaGGCTACACACACATACTTCCCAGAGTCAAGCGGT +
Preference number: 6 (lower is better)
Translates to: SLYVLVSSPLGF*ATHTYFPESSG
Trigger: ACCGCTTGACTCTGGGAAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGATGACACTAAGACATACAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp CTGTCCACAACATTAAATAATTTGAAATCAGGAAGGTaGGTGGGTAGTAGTGTTTGCGGATTCACGGTGGAG +
Preference number: 6 (lower is better)
Translates to: LSTTLNNLKSGR*VGSSVCGFTVE
Trigger: CTCCACCGTGAATCCGCAAACACTACTACCCACGCACCTTCCTGATTTCAAATTATTTAATGTTGTGGACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp CTAGCCTCTGCTGAGGGTTGCTGCAGATCTATATCGTaGCTTGAAGATTCATATATGGTGACCATCCTATTT +
Preference number: 6 (lower is better)
Translates to: LASAEGCCRSIS*LEDSYMVTILF
Trigger: AAATAGGATGGTCACCATATATGAATCTTCAAGGCACGATATAGATCTGCAGCAACCCTCAGCAGAGGCTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TATGTTCCAGTCTGGTATTGTTCATCATCAGAATCATaGTCCATTTGCGTTTCACCGGTCTCATCTCTGCCT +
Preference number: 6 (lower is better)
Translates to: YVPVWYCSSSES*SICVSPVSSLP
Trigger: AGGCAGAGATGAGACCGGTGAAACGCAAATGGACCATGATTCTGATGATGAACAATACCAGACTGGAACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp CTTAGGCAGAGAGTCATAGGGCAGGTGTTTGGAAGTTaGGTTTTGAGCAGGTTTCTTATCAAAGACACTCTT +
Preference number: 6 (lower is better)
Translates to: LRQRVIGQVFGS*VLSRFLIKDTL
Trigger: AAGAGTGTCTTTGATAAGAAACCTGCTCAAAACCCAACTTCCAAACACCTGCCCTATGACTCTCTGCCTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TCCACAGAGCAGTTCATTGCTACAGGCTTGCCAACCTaGGCAACTACTTTTTCATTGAATGGGTTTCTGAAT +
Preference number: 6 (lower is better)
Translates to: STEQFIATGLPT*ATTFSLNGFLN
Trigger: ATTCAGAAACCCATTCAATGAAAAAGTAGTTGCCCAGGTTGGCAAGCCTGTAGCAATGAACTGCTCTGTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GTGCCGCCAACCAAAACAGTATGTTCCAGTCTGGTATaGTTCATCATCAGAATCATGGTCCATTTGCGTTTC +
Preference number: 6 (lower is better)
Translates to: VPPTKTVCSSLV*FIIRIMVHLRF
Trigger: GAAACGCAAATGGACCATGATTCTGATGATGAACAATACCAGACTGGAACATACTGTTTTGGTTGGCGGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp TCATTGCGGTGCTCTCCTGTGATTTGCTCAACAGAGTaGTTTCCGAAGCTGTTATATTTCCCGAAGTATGAG +
Preference number: 6 (lower is better)
Translates to: SLRCSPVICSTE*FPKLLYFPKYE
Trigger: CTCATACTTCGGGAAATATAACAGCTTCGGAAACAACTCTGTTGAGCAAATCACAGGAGAGCACCGCAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp AGGCTCTTTTCATTGCGGTGCTCTCCTGTGATTTGCTCAACAGAGTaGTTTCCGAAGCTGTTATATTTCCCGAAGTATGAGTGCATTTCT +
Preference number: 6 (lower is better)
Translates to: RLFSLRCSPVICSTE*FPKLLYFPKYECIS
Trigger: AGAAATGCACTCATACTTCGGGAAATATAACAGCTTCGGAAACAACTCTGTTGAGCAAATCACAGGAGAGCACCGCAATGAAAAGAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp ACTTGGAAATCTTTCCCATGGAGTACTTGCTTCTTAAAATGCTGCTaGTGTTCAATTTTGGCAGGTGTCAGTCTTAGGCGGACATGCATC +
Preference number: 6 (lower is better)
Translates to: TWKSFPWSTCFLKCC*CSILAGVSLRRTCI
Trigger: GATGCATGTCCGCCTAAGACTGACACCTGCCAAAATTGAACACAAGCAGCATTTTAAGAAGCAAGTACTCCATGGGAAAGATTTCCAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TTCACCGGTCTCATCTCTGCCTTTGGTAAAGTGATTTaGGCATCCGTGGAAAATTGGATCTGTAATGTGCTA +
Preference number: 6 (lower is better)
Translates to: FTGLISAFGKVI*ASVENWICNVL
Trigger: TAGCACATTACAGATCCAATTTTCCACGGATGCTCAAATCACTTTACCAAAGGCAGAGATGAGACCGGTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp GGAGGCTTAGTGGCTGTGTTCTTTTGTAAACCAAACTaGTGCAGATTCTTTAGCATCCCCTCTTTGTTATGG +
Preference number: 6 (lower is better)
Translates to: GGLVAVFFCKPN*CRFFSIPSLLW
Trigger: CCATAACAAAGAGGGGATGCTAAAGAATCTGCATCAGTTTGGTTTACAAAAGAACACAGCCACTAAGCCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS TCA 72 bp TACAGGGTCCCATTTGGATACAAGAAAAACCTGGAATaGGTCAACTGCAGTGGTTTTAGTTCAGTCCCATCA +
Preference number: 6 (lower is better)
Translates to: YRVPFGYKKNLE*VNCSGFSSVPS
Trigger: TGATGGGACTGAACTAAAACCACTGCAGTTGACTCATTCCAGGTTTTTCTTGTATCCAAATGGGACCCTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp ATCAGCATCATTGGTGCTTATGCAATGGTAAAGACCTaGATCAAAGGTATCAGCCATCTGGAGTTCCAACTT +
Preference number: 6 (lower is better)
Translates to: ISIIGAYAMVKT*IKGISHLEFQL
Trigger: AAGTTGGAACTCCAGATGGCTGATACCTTTGATGCAGGTCTTTACCATTGCATAAGCACCAATGATGCTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS GCA 72 bp GGGCTCTACCACAGTTATCCTGTATGTGAGAATATCTaGATCAGCATCATTGGTGCTTATGCAATGGTAAAG +
Preference number: 6 (lower is better)
Translates to: GLYHSYPVCENI*ISIIGAYAMVK
Trigger: CTTTACCATTGCATAAGCACCAATGATGCTGATGCAGATATTCTCACATACAGGATAACTGTGGTAGAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp GCTAATAGAAGCATCTGGAATACCAGTGGAAAGGCATaGAAGATCGAGTATCTCACCCATAATTACTGTGTG +
Preference number: 6 (lower is better)
Translates to: ANRSIWNTSGKA*KIEYLTHNYCV
Trigger: CACACAGTAATTATGGGTGAGATACTCGATCTTCCATGCCTTTCCACTGGTATTCCAGATGCTTCTATTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp CCAGAAGCCTTGCAGTCAACTTGGAAATCTTTCCCATaGAGTACTTGCTTCTTAAAATGCTGCTTGTGTTCA +
Preference number: 6 (lower is better)
Translates to: PEALQSTWKSFP*STCFLKCCLCS
Trigger: TGAACACAAGCAGCATTTTAAGAAGCAAGTACTCCATGGGAAAGATTTCCAAGTTGACTGCAAGGCTTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp AACCAAAAAGGATCTGCTTTGAAATCAGCCTCTATGTaGGTAAAAGTGTCTTCAGGCCTAAGAGCCACCTGT +
Preference number: 6 (lower is better)
Translates to: NQKGSALKSASM*VKVSSGLRATC
Trigger: ACAGGTGGCTCTTAGGCCTGAAGACACTTTTACCAACATAGAGGCTGATTTCAAAGCAGATCCTTTTTGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp GACAATATCCAGTTTGTATGTCTTAGTGTCATCCCCACTAGGATTTaGAGCTACACACACATACTTCCCAGAGTCAAGCGGTTTCACTTT +
Preference number: 6 (lower is better)
Translates to: DNIQFVCLSVIPTRI*SYTHILPRVKRFHF
Trigger: AAAGTGAAACCGCTTGACTCTGGGAAGTATGTGTGTGTAGCTCAAAATCCTAGTGGGGATGACACTAAGACATACAAACTGGATATTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp CAAGTCCAGATCCATCTATGTCCCTGTCATGCTCAATaGTCCTTTGACCTTTCATTTGGACTGAAACTTGAA +
Preference number: 6 (lower is better)
Translates to: QVQIHLCPCHAQ*SFDLSFGLKLE
Trigger: TTCAAGTTTCAGTCCAAATGAAAGGTCAAAGGACAATTGAGCATGACAGGGACATAGATGGATCTGGACTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp TTTGACACAGCTGCACTGTCCACAACATTAAATAATTaGAAATCAGGAAGGTGCGTGGGTAGTAGTGTTTGC +
Preference number: 6 (lower is better)
Translates to: FDTAALSTTLNN*KSGRCVGSSVC
Trigger: GCAAACACTACTACCCACGCACCTTCCTGATTTCAAATTATTTAATGTTGTGGACAGTGCAGCTGTGTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp CTTCTGTTAAAGGTATCTGAGGTCCATAACTTTCTGTaGGATTTGCTGACTGCAGGACTGTATTGGCTTTGT +
Preference number: 6 (lower is better)
Translates to: LLLKVSEVHNFL*DLLTAGLYWLC
Trigger: ACAAAGCCAATACAGTCCTGCAGTCAGCAAATCCAACAGAAAGTTATGGACCTCAGATACCTTTAACAGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GATTCATATATGGTGACCATCCTATTTGACATCATCTaGAAAACTGCTGGGACCTCACTGTCTGTAACCACA +
Preference number: 6 (lower is better)
Translates to: DSYMVTILFDII*KTAGTSLSVTT
Trigger: TGTGGTTACAGACAGTGAGGTCCCAGCAGTTTTCAAGATGATGTCAAATAGGATGGTCACCATATATGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 90 bp TGGGTTCTTCAAGTCCAGATCCATCTATGTCCCTGTCATGCTCAATaGTCCTTTGACCTTTCATTTGGACTGAAACTTGAAAACTGGAAA +
Preference number: 6 (lower is better)
Translates to: WVLQVQIHLCPCHAQ*SFDLSFGLKLENWK
Trigger: TTTCCAGTTTTCAAGTTTCAGTCCAAATGAAAGGTCAAAGGACAATTGAGCATGACAGGGACATAGATGGATCTGGACTTGAAGAACCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp TGTTTGGTTTGCGAGTATCCAGGAAATTGTAGGTCTTaGCATACCTTCTACTCTACACTTAAGTTTCACAGT +
Preference number: 6 (lower is better)
Translates to: CLVCEYPGNCRS*HTFYSTLKFHS
Trigger: ACTGTGAAACTTAAGTGTAGAGTAGAAGGTATGCCAAGACCTACAATTTCCTGGATACTCGCAAACCAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CAA 72 bp GCAGATTCTTTAGCATCCCCTCTTTGTTATGGTTATTaGCAAAGATTGGGTGCCAGGGAATTTTTCTTCTTG +
Preference number: 6 (lower is better)
Translates to: ADSLASPLCYGY*QRLGAREFFFL
Trigger: CAAGAAGAAAAATTCCCTGGCACCCAATCTTTGCAAATAACCATAACAAAGAGGGGATGCTAAAGAATCTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6
CDS CCA 72 bp AACAGTAAAGCTTGCAGCCTTTCCTCCAATTATTCTTaGTTTCTTCAATATAGTCTTAGGCAGAGAGTCATA +
Preference number: 6 (lower is better)
Translates to: NSKACSLSSNYS*FLQYSLRQRVI
Trigger: TATGACTCTCTGCCTAAGACTATATTGAAGAAACCAAGAATAATTGGAGGAAAGGCTGCAAGCTTTACTGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000039419.12
ENSMUST00000193455.6
ENSMUST00000194546.6