Pregenerated sensors for IGLC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000105547

Ensembl transcript IDs: ENSMUST00000200235.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	ATAGCTAGTATAGAGAAGAGACCCCACTCTGGGTCCTACAGCTGCAGGGTTCCTCTCCTCAGGGGAAGGTaGAAACATGGTGAGTGTGGG	+
Preference number: 4 (lower is better) Translates to: IASIEKRPHSGSYSCRVPLLRGR*KHGECG Trigger: CCCACACTCACCATGTTTCCACCTTCCCCTGAGGAG...AGGAACCCTGCAGCTGTAGGACCCAGAGTGGGGTCTCTTCTCTATACTAGCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR GCA 90 bp	GGGCAAGAGATAAGGGTTAAGATAGCTAGTATAGAGAAGAGACCCCACTCTGGGGATAGGTGTACCATTTaGCTTCCAGGCCACTGTCAC	+
Preference number: 4 (lower is better) Translates to: GQEIRVKIASIEKRPHSGDRCTI*LPGHCH Trigger: GTGACAGTGGCCTGGAAGGCAAATGGTACACCTATC...CCCAGAGTGGGGTCTCTTCTCTATACTAGCTATCTTAACCCTTATCTCTTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CCA 90 bp	AGTATAGAGAAGAGACCCCACTCTGGGTCCTACAGCTGCAGGGTTCCTAGGCTACACTTGGGGAAAAATTaGAAATCAGACACACGAGTG	+
Preference number: 4 (lower is better) Translates to: SIEKRPHSGSYSCRVPRLHLGKN*KSDTRV Trigger: CACTCGTGTGTCTGATTTCCAATTTTTCCCCAAGTG...TAGCCTAGGAACCCTGCAGCTGTAGGACCCAGAGTGGGGTCTCTTCTCTATACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CCA 90 bp	TTCAGTGGGCAAGAGATAAGGGTTAAGATAGCTAGTATAGAGAAGAGACCCCACGTGGCTTTGTTTTCCTaGAGCTCCTCAGGGGAAGGT	+
Preference number: 4 (lower is better) Translates to: FSGQEIRVKIASIEKRPHVALFS*SSSGEG Trigger: ACCTTCCCCTGAGGAGCTCCAGGAAAACAAAGCCAC...GTGGGGTCTCTTCTCTATACTAGCTATCTTAACCCTTATCTCTTGCCCACTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CCA 90 bp	ATAGCTAGTATAGAGAAGAGACCCCACTCTGGGTCCTACAGCTGCAGGGTTCCTCACTGTCACACCACTTaGGGAAAAATTGGAAATCAG	+
Preference number: 4 (lower is better) Translates to: IASIEKRPHSGSYSCRVPHCHTT*GKIGNQ Trigger: CTGATTTCCAATTTTTCCCCAAGTGGTGTGACAGTG...AGGAACCCTGCAGCTGTAGGACCCAGAGTGGGGTCTCTTCTCTATACTAGCTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CCA 90 bp	AGTGGGCAAGAGATAAGGGTTAAGATAGCTAGTATAGAGAAGAGACCCCACTCTGAAGTGTCCACACCCTaGGTGATAGGTGTACCATTT	+
Preference number: 4 (lower is better) Translates to: SGQEIRVKIASIEKRPHSEVSTP*VIGVPF Trigger: AAATGGTACACCTATCACCCAGGGTGTGGACACTTC...AGAGTGGGGTCTCTTCTCTATACTAGCTATCTTAACCCTTATCTCTTGCCCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CCA 90 bp	AGTGGGCAAGAGATAAGGGTTAAGATAGCTAGTATAGAGAAGAGACCCCACTCTAATGTAAGAAGCTGCTaGCCATGTACTTGTTGTCCT	+
Preference number: 4 (lower is better) Translates to: SGQEIRVKIASIEKRPHSNVRSC*PCTCCP Trigger: AGGACAACAAGTACATGGCCAGCAGCTTCTTACATT...AGAGTGGGGTCTCTTCTCTATACTAGCTATCTTAACCCTTATCTCTTGCCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR GCA 90 bp	TTCAGTGGGCAAGAGATAAGGGTTAAGATAGCTAGTATAGAGAAGAGACCCCACTCAAATGTAAGAAGCTaGTGGCCATGTACTTGTTGT	+
Preference number: 4 (lower is better) Translates to: FSGQEIRVKIASIEKRPHSNVRS*WPCTCC Trigger: ACAACAAGTACATGGCCAGCAGCTTCTTACATTTGA...GTGGGGTCTCTTCTCTATACTAGCTATCTTAACCCTTATCTCTTGCCCACTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CAA 90 bp	GCTAGTATAGAGAAGAGACCCCACTCTGGGTCCTACAGCTGCAGGGTTCCTAGGCCACTTGGGGAAAAATaGGAAATCAGACACACGAGT	+
Preference number: 5 (lower is better) Translates to: ASIEKRPHSGSYSCRVPRPLGEK*EIRHTS Trigger: ACTCGTGTGTCTGATTTCCAATTTTTCCCCAAGTGG...CCTAGGAACCCTGCAGCTGTAGGACCCAGAGTGGGGTCTCTTCTCTATACTAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS-3UTR CAA 90 bp	ATAGAGAAGAGACCCCACTCTGGGTCCTACAGCTGCAGGGTTCCTAGGCTAAGGCCACTGTCACACCACTaGGGGAAAAATTGGAAATCA	+
Preference number: 5 (lower is better) Translates to: IEKRPHSGSYSCRVPRLRPLSHH*GKNWKS Trigger: TGATTTCCAATTTTTCCCCAAGTGGTGTGACAGTGG...CCTTAGCCTAGGAACCCTGCAGCTGTAGGACCCAGAGTGGGGTCTCTTCTCTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS GCA 90 bp	AACTGTTGTGAGATCTCCACTGGTCCGATGTCAAATGTAAGAAGCTaGTGGCCATGTACTTGTTGTCCTCTTTGGTGGGATTTGAAGTGT	+
Preference number: 5 (lower is better) Translates to: NCCEISTGPMSNVRS*WPCTCCPLWWDLKC Trigger: ACACTTCAAATCCCACCAAAGAGGACAACAAGTACATGGCCAGCAGCTTCTTACATTTGACATCGGACCAGTGGAGATCTCACAACAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS CAA 90 bp	TGCAGGAGACAGACTCTTCTCCACAGTGTCCCCTTCATGTGTAACTaGGCAGGTAAAACTGTTGTGAGATCTCCACTGGTCCGATGTCAA	+
Preference number: 6 (lower is better) Translates to: CRRQTLLHSVPFMCN*AGKTVVRSPLVRCQ Trigger: TTGACATCGGACCAGTGGAGATCTCACAACAGTTTTACCTGCCAAGTTACACATGAAGGGGACACTGTGGAGAAGAGTCTGTCTCCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS GCA 72 bp	GAGATCTCCACTGGTCCGATGTCAAATGTAAGAAGCTaGTGGCCATGTACTTGTTGTCCTCTTTGGTGGGAT	+
Preference number: 6 (lower is better) Translates to: EISTGPMSNVRS*WPCTCCPLWWD Trigger: ATCCCACCAAAGAGGACAACAAGTACATGGCCAGCAGCTTCTTACATTTGACATCGGACCAGTGGAGATCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200235.2
CDS TCA 72 bp	TCCCCTTCATGTGTAACTTGGCAGGTAAAACTGTTGTaGGATCTCCACTGGTCCGATGTCAAATGTAAGAAG	+
Preference number: 6 (lower is better) Translates to: SPSCVTWQVKLL*DLHWSDVKCKK Trigger: CTTCTTACATTTGACATCGGACCAGTGGAGATCTCACAACAGTTTTACCTGCCAAGTTACACATGAAGGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200235.2