Pregenerated sensors for IGLC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076937

Ensembl transcript IDs: ENSMUST00000103749.3, ENSMUST00000198182.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	TTCAGTGGGCAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACTGGGTCTCTAAAAGCTaGAGGGTTCCCAGGCTAAGG	+
Preference number: 2 (lower is better) Translates to: FSGQERRVKIANIKKRPHWVSKS*RVPRLR Trigger: CCTTAGCCTGGGAACCCTGCAGCTTTTAGAGACCCA...GTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTGCCCACTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR TCA 90 bp	AGTGGGCAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTGGAAGCTGCTGGCCATaGACTTGTTGCCCTCTTTGG	+
Preference number: 4 (lower is better) Translates to: SGQERRVKIANIKKRPHPGSCWP*TCCPLW Trigger: CCAAAGAGGGCAACAAGTTCATGGCCAGCAGCTTCC...AGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTGCCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR CCA 90 bp	AGTGGGCAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTCTCCTCAGAGGAAGGTaGAAACACGGTGAGAGTGGG	+
Preference number: 4 (lower is better) Translates to: SGQERRVKIANIKKRPHPLLRGR*KHGESG Trigger: CCCACTCTCACCGTGTTTCCACCTTCCTCTGAGGAG...AGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTGCCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR CCA 90 bp	TTCAGTGGGCAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCTCCTCAGAGGAAGGTaGAAACACGGTGAGAGTGGG	+
Preference number: 4 (lower is better) Translates to: FSGQERRVKIANIKKRPHLLRGR*KHGESG Trigger: CCCACTCTCACCGTGTTTCCACCTTCCTCTGAGGAG...GTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTGCCCACTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR TCA 90 bp	AGTGGGCAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTTGGCTTTGTTTTCCTTaGGCTCCTCAGAGGAAGGTG	+
Preference number: 4 (lower is better) Translates to: SGQERRVKIANIKKRPHPWLCFP*APQRKV Trigger: CACCTTCCTCTGAGGAGCTCAAGGAAAACAAAGCCA...AGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTGCCCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR TCA 90 bp	CAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTGGGTCTTGGCTTTGTTTTCCTTaGGCTCCTCAGAGGAAGGTG	+
Preference number: 4 (lower is better) Translates to: QERRVKIANIKKRPHPGSWLCFP*APQRKV Trigger: CACCTTCCTCTGAGGAGCTCAAGGAAAACAAAGCCA...AGACCCAGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR TCA 90 bp	AGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTGGGTCTCTAAAAGGAAGCTGCTGGCCATaGACTTGTTGCCCTCTTTGG	+
Preference number: 4 (lower is better) Translates to: RRVKIANIKKRPHPGSLKGSCWP*TCCPLW Trigger: CCAAAGAGGGCAACAAGTTCATGGCCAGCAGCTTCC...TTTTAGAGACCCAGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR CAA 90 bp	CAGGAAAGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTGGGTCTCTGCTGGCCATGAACTaGTTGCCCTCTTTGGTGGGA	+
Preference number: 5 (lower is better) Translates to: QERRVKIANIKKRPHPGSLLAMN*LPSLVG Trigger: TCCCACCAAAGAGGGCAACAAGTTCATGGCCAGCAG...AGACCCAGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCTTTCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2
CDS-3UTR CAA 90 bp	AGAAGGGTTAAGATAGCTAATATAAAGAAGAGACCCCACCCTGGGTCTCTAAAACTGCTGGCCATGAACTaGTTGCCCTCTTTGGTGGGA	+
Preference number: 5 (lower is better) Translates to: RRVKIANIKKRPHPGSLKLLAMN*LPSLVG Trigger: TCCCACCAAAGAGGGCAACAAGTTCATGGCCAGCAG...TTTTAGAGACCCAGGGTGGGGTCTCTTCTTTATATTAGCTATCTTAACCCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103749.3 ENSMUST00000198182.2

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