Pregenerated sensors for IGKV8-16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076591

Ensembl transcript IDs: ENSMUST00000103392.3, ENSMUST00000195945.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GATGTCCAGGTGATCAACGGTGTAGGAGTTTGCCCTGGTTTCCACTaGTGCCAGACCAAACAGTACCTTTGGTTTCCACTCCATAAAAGA	+
Preference number: 5 (lower is better) Translates to: DVQVINGVGVCPGFH*CQTKQYLWFPLHKR Trigger: TCTTTTATGGAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCACCTGGACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103392.3 ENSMUST00000195945.2
CDS CCA 72 bp	GTGATCAACGGTGTAGGAGTTTGCCCTGGTTTCCACTaGTGCCAGACCAAACAGTACCTTTGGTTTCCACTC	+
Preference number: 6 (lower is better) Translates to: VINGVGVCPGFH*CQTKQYLWFPL Trigger: GAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGATCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103392.3 ENSMUST00000195945.2
CDS GCA 72 bp	ATCAACGGTGTAGGAGTTTGCCCTGGTTTCCACTGGTaGCAGACCAAACAGTACCTTTGGTTTCCACTCCAT	+
Preference number: 6 (lower is better) Translates to: INGVGVCPGFHW*QTKQYLWFPLH Trigger: ATGGAGTGGAAACCAAAGGTACTGTTTGGTCTGGCACCAGTGGAAACCAGGGCAAACTCCTACACCGTTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103392.3 ENSMUST00000195945.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu