Pregenerated sensors for IGKV7-33 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076575Ensembl transcript IDs: ENSMUST00000103376.3, ENSMUST00000197429.5
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGGTTTCTTCTGGTACCAAGCCAAGTAGTGCACCTTGTGTTTGCTTaGATAAAGGCTCTCACTGGCCGTGCAACTAATGGTGACCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: WFLLVPSQVVHLVFA*IKALTGRATNGDLL Trigger: AAGAAGGTCACCATTAGTTGCACGGCCAGTGAGAGCCTTTATTCAAGCAAACACAAGGTGCACTACTTGGCTTGGTACCAGAAGAAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103376.3 ENSMUST00000197429.5 |
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| CDS CAA 72 bp | CTGCCTGTGAAGCGATCAGGGACCCCAATGTATCGGTaGGATGCCCCGTATATCAGCAGTTTAGGAGATTGC | + |
|
Preference number: 6 (lower is better) Translates to: LPVKRSGTPMYR*DAPYISSLGDC Trigger: GCAATCTCCTAAACTGCTGATATACGGGGCATCCAACCGATACATTGGGGTCCCTGATCGCTTCACAGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103376.3 ENSMUST00000197429.5 |
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| CDS GCA 72 bp | TGTGAAGCGATCAGGGACCCCAATGTATCGGTTGGATaGCCCGTATATCAGCAGTTTAGGAGATTGCTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: CEAIRDPNVSVG*PVYQQFRRLLW Trigger: CCAGAGCAATCTCCTAAACTGCTGATATACGGGGCATCCAACCGATACATTGGGGTCCCTGATCGCTTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103376.3 ENSMUST00000197429.5 |
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| CDS TCA 72 bp | CTGGTACCAAGCCAAGTAGTGCACCTTGTGTTTGCTTaGATAAAGGCTCTCACTGGCCGTGCAACTAATGGT | + |
|
Preference number: 6 (lower is better) Translates to: LVPSQVVHLVFA*IKALTGRATNG Trigger: ACCATTAGTTGCACGGCCAGTGAGAGCCTTTATTCAAGCAAACACAAGGTGCACTACTTGGCTTGGTACCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103376.3 ENSMUST00000197429.5 |
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