Pregenerated sensors for IGKV6-29 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076578

Ensembl transcript IDs: ENSMUST00000103379.3, ENSMUST00000197371.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 72 bp	CTGCCTGTGAAGCGATCAGGGACCCCAGGGTACCGGTaGGATGCCCCGTATATCAGCAGTTTAGGAGACTGC	+
Preference number: 6 (lower is better) Translates to: LPVKRSGTPGYR*DAPYISSLGDC Trigger: GCAGTCTCCTAAACTGCTGATATACGGGGCATCCAACCGGTACCCTGGGGTCCCTGATCGCTTCACAGGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103379.3 ENSMUST00000197371.2
CDS GCA 72 bp	TGTGAAGCGATCAGGGACCCCAGGGTACCGGTTGGATaGCCCGTATATCAGCAGTTTAGGAGACTGCTCTGG	+
Preference number: 6 (lower is better) Translates to: CEAIRDPRVPVG*PVYQQFRRLLW Trigger: CCAGAGCAGTCTCCTAAACTGCTGATATACGGGGCATCCAACCGGTACCCTGGGGTCCCTGATCGCTTCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103379.3 ENSMUST00000197371.2
CDS TCA 72 bp	AAGTACCCACATTCTCACTGGCCTTGCAGCTCAAGGTaGCCCTCTCTCCTACTGACATGGACATGGATTTGG	+
Preference number: 6 (lower is better) Translates to: KYPHSHWPCSSR*PSLLLTWTWIW Trigger: CCAAATCCATGTCCATGTCAGTAGGAGAGAGGGTCACCTTGAGCTGCAAGGCCAGTGAGAATGTGGGTACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103379.3 ENSMUST00000197371.2
CDS CAA 72 bp	AAGGTGACCCTCTCTCCTACTGACATGGACATGGATTaGGGAGATTGGGTCATTACAATGTTCCCATCAGCA	+
Preference number: 6 (lower is better) Translates to: KVTLSPTDMDMD*GDWVITMFPSA Trigger: TGCTGATGGGAACATTGTAATGACCCAATCTCCCAAATCCATGTCCATGTCAGTAGGAGAGAGGGTCACCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103379.3 ENSMUST00000197371.2
CDS CCA 72 bp	CTCTCTCCTACTGACATGGACATGGATTTGGGAGATTaGGTCATTACAATGTTCCCATCAGCATATAACCAG	+
Preference number: 6 (lower is better) Translates to: LSPTDMDMDLGD*VITMFPSAYNQ Trigger: CTGGTTATATGCTGATGGGAACATTGTAATGACCCAATCTCCCAAATCCATGTCCATGTCAGTAGGAGAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103379.3

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