Pregenerated sensors for IGKV4-90 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076533

Ensembl transcript IDs: ENSMUST00000103334.4

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ATGGTGACCTTCTCCCCAGGAGATGCAGCTATGATTGCTGGAGACTaGGTGAGCAAAATTTCTCCATTGGTCAATATGACTGTGACACTG	+
Preference number: 5 (lower is better) Translates to: MVTFSPGDAAMIAGD*VSKISPLVNMTVTL Trigger: CAGTGTCACAGTCATATTGACCAATGGAGAAATTTTGCTCACCCAGTCTCCAGCAATCATAGCTGCATCTCCTGGGGAGAAGGTCACCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103334.4
CDS CCA 72 bp	GGTGACCTTCTCCCCAGGAGATGCAGCTATGATTGCTaGAGACTGGGTGAGCAAAATTTCTCCATTGGTCAA	+
Preference number: 6 (lower is better) Translates to: GDLLPRRCSYDC*RLGEQNFSIGQ Trigger: TTGACCAATGGAGAAATTTTGCTCACCCAGTCTCCAGCAATCATAGCTGCATCTCCTGGGGAGAAGGTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103334.4
CDS CCA 72 bp	TTCTCCCCAGGAGATGCAGCTATGATTGCTGGAGACTaGGTGAGCAAAATTTCTCCATTGGTCAATATGACT	+
Preference number: 6 (lower is better) Translates to: FSPGDAAMIAGD*VSKISPLVNMT Trigger: AGTCATATTGACCAATGGAGAAATTTTGCTCACCCAGTCTCCAGCAATCATAGCTGCATCTCCTGGGGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103334.4
CDS CAA 90 bp	GATGCAGCTATGATTGCTGGAGACTGGGTGAGCAAAATTTCTCCATaGGTCAATATGACTGTGACACTGATTAGCAGGAAGCTGAAAATC	+
Preference number: 6 (lower is better) Translates to: DAAMIAGDWVSKISP*VNMTVTLISRKLKI Trigger: GATTTTCAGCTTCCTGCTAATCAGTGTCACAGTCATATTGACCAATGGAGAAATTTTGCTCACCCAGTCTCCAGCAATCATAGCTGCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103334.4
CDS CAA 72 bp	ATGATTGCTGGAGACTGGGTGAGCAAAATTTCTCCATaGGTCAATATGACTGTGACACTGATTAGCAGGAAG	+
Preference number: 6 (lower is better) Translates to: MIAGDWVSKISP*VNMTVTLISRK Trigger: CTTCCTGCTAATCAGTGTCACAGTCATATTGACCAATGGAGAAATTTTGCTCACCCAGTCTCCAGCAATCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103334.4

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