Pregenerated sensors for IGKV4-79 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076541

Ensembl transcript IDs: ENSMUST00000103342.4

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ACTGCAGGTCAAGGTGACCTTCTCCCCAGGAGATGCAGACATGATTaGTGGAGACTGGGTGAGAACAATTTGTCCTCTGGACATTATGAC	+
Preference number: 5 (lower is better) Translates to: TAGQGDLLPRRCRHD*WRLGENNLSSGHYD Trigger: GTCATAATGTCCAGAGGACAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAGAAGGTCACCTTGACCTGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103342.4
CDS GCA 72 bp	CAAGGTGACCTTCTCCCCAGGAGATGCAGACATGATTaGTGGAGACTGGGTGAGAACAATTTGTCCTCTGGA	+
Preference number: 6 (lower is better) Translates to: QGDLLPRRCRHD*WRLGENNLSSG Trigger: TCCAGAGGACAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAGAAGGTCACCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103342.4
CDS CCA 72 bp	GGTGACCTTCTCCCCAGGAGATGCAGACATGATTGCTaGAGACTGGGTGAGAACAATTTGTCCTCTGGACAT	+
Preference number: 6 (lower is better) Translates to: GDLLPRRCRHDC*RLGENNLSSGH Trigger: ATGTCCAGAGGACAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAGAAGGTCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103342.4
CDS CCA 72 bp	TTCTCCCCAGGAGATGCAGACATGATTGCTGGAGACTaGGTGAGAACAATTTGTCCTCTGGACATTATGACT	+
Preference number: 6 (lower is better) Translates to: FSPGDADMIAGD*VRTICPLDIMT Trigger: AGTCATAATGTCCAGAGGACAAATTGTTCTCACCCAGTCTCCAGCAATCATGTCTGCATCTCCTGGGGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103342.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu