Pregenerated sensors for IGKV4-58 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095633

Ensembl transcript IDs: ENSMUST00000103355.3, ENSMUST00000197448.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GCAGGTCATGGTGACCTTCTGCCCCAGAGAGGCAGCCATTATTGCTaGAGACTGGGTGAGCACATTTTCTCCTCTGGACATTATGACTGT	+
Preference number: 5 (lower is better) Translates to: AGHGDLLPQRGSHYC*RLGEHIFSSGHYDC Trigger: ACAGTCATAATGTCCAGAGGAGAAAATGTGCTCACCCAGTCTCCAGCAATAATGGCTGCCTCTCTGGGGCAGAAGGTCACCATGACCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197448.2
CDS CCA 90 bp	ATGGTGACCTTCTGCCCCAGAGAGGCAGCCATTATTGCTGGAGACTaGGTGAGCACATTTTCTCCTCTGGACATTATGACTGTGACACTG	+
Preference number: 5 (lower is better) Translates to: MVTFCPREAAIIAGD*VSTFSPLDIMTVTL Trigger: CAGTGTCACAGTCATAATGTCCAGAGGAGAAAATGTGCTCACCCAGTCTCCAGCAATAATGGCTGCCTCTCTGGGGCAGAAGGTCACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197448.2
CDS TCA 72 bp	TGGAACTTACACTTGAGCTGGCACTGCAGGTCATGGTaGCCTTCTGCCCCAGAGAGGCAGCCATTATTGCTG	+
Preference number: 6 (lower is better) Translates to: WNLHLSWHCRSW*PSAPERQPLLL Trigger: CAGCAATAATGGCTGCCTCTCTGGGGCAGAAGGTCACCATGACCTGCAGTGCCAGCTCAAGTGTAAGTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103355.3 ENSMUST00000197448.2
CDS GCA 72 bp	CATGGTGACCTTCTGCCCCAGAGAGGCAGCCATTATTaGTGGAGACTGGGTGAGCACATTTTCTCCTCTGGA	+
Preference number: 6 (lower is better) Translates to: HGDLLPQRGSHY*WRLGEHIFSSG Trigger: TCCAGAGGAGAAAATGTGCTCACCCAGTCTCCAGCAATAATGGCTGCCTCTCTGGGGCAGAAGGTCACCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197448.2
CDS CCA 72 bp	GGTGACCTTCTGCCCCAGAGAGGCAGCCATTATTGCTaGAGACTGGGTGAGCACATTTTCTCCTCTGGACAT	+
Preference number: 6 (lower is better) Translates to: GDLLPQRGSHYC*RLGEHIFSSGH Trigger: ATGTCCAGAGGAGAAAATGTGCTCACCCAGTCTCCAGCAATAATGGCTGCCTCTCTGGGGCAGAAGGTCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000197448.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu