Pregenerated sensors for IGKC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076609Ensembl transcript IDs: ENSMUST00000103410.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTATGGAGCTGGGGAGCTaGTGGTGGCGTCTCAGGACC | + |
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Preference number: 2 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLMELGS*WWRLRT Trigger: GGTCCTGAGACGCCACCACCAGCTCCCCAGCTCCAT...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| 3UTR-3UTR CCA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTGAGCTGGGGAGCTGGTaGTGGCGTCTCAGGACCTTT | + |
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Preference number: 2 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLELGSW*WRLRTF Trigger: AAAGGTCCTGAGACGCCACCACCAGCTCCCCAGCTC...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| 3UTR CCA 72 bp | GGGGAAGCCTCCAAGACCTTAGAAGGGAAGATAGGATaGAGCTGGGGAGCTGGTGGTGGCGTCTCAGGACCT | + |
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Preference number: 3 (lower is better) Translates to: GEASKTLEGKIG*SWGAGGGVSGP Trigger: AGGTCCTGAGACGCCACCACCAGCTCCCCAGCTCCATCCTATCTTCCCTTCTAAGGTCTTGGAGGCTTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR TCA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTCGTCCTTGGTCAACGTaGGGGTGCTGCTCATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLRPWST*GCCSCC Trigger: ACAGCATGAGCAGCACCCTCACGTTGACCAAGGACG...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR GCA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTCCTCCAGATGTTAACTaGTCACTGGATGGTGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLPPDVN*SLDGGK Trigger: CTTCCCACCATCCAGTGAGCAGTTAACATCTGGAGG...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR GCA 90 bp | AGGGAAGATAGGATGGAGCTGGGGAGCTGGTGGTGGCGTCTCAGGACCTTTGTCTGCTCATGCTGTAGGTaGTGTCTTTGCTGTCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: REDRMELGSWWWRLRTFVCSCCR*CLCCPD Trigger: ATCAGGACAGCAAAGACAGCACCTACAGCATGAGCA...GACAAAGGTCCTGAGACGCCACCACCAGCTCCCCAGCTCCATCCTATCTTCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR CCA 90 bp | AGGGAAGATAGGATGGAGCTGGGGAGCTGGTGGTGGCGTCTCAGGACCTTTGTCTTGATGTCTTGTGAGTaGCCTCACAGGTATAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: REDRMELGSWWWRLRTFVLMSCE*PHRYSC Trigger: ACAGCTATACCTGTGAGGCCACTCACAAGACATCAA...GACAAAGGTCCTGAGACGCCACCACCAGCTCCCCAGCTCCATCCTATCTTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR CCA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTATGTTAACTGCTCACTaGATGGTGGGAAGATGGATA | + |
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Preference number: 4 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLMLTAH*MVGRWI Trigger: TATCCATCTTCCCACCATCCAGTGAGCAGTTAACAT...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR CAA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTCCATCAATCTTCCACTaGACATTGATGTCTTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLPSIFH*TLMSLG Trigger: CCCCAAAGACATCAATGTCAAGTGGAAGATTGATGG...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS-3UTR CAA 90 bp | AGGAGAAGGAGGTGGGGAGGAGGTTTGGAGCACCGCAACAGTGGTAGGTCGCTTTTCCTGTTGAAGCTCTaGACAATGGGTGAAGTTGAT | + |
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Preference number: 5 (lower is better) Translates to: RRRRWGGGLEHRNSGRSLFLLKL*TMGEVD Trigger: ATCAACTTCACCCATTGTCAAGAGCTTCAACAGGAA...AAGCGACCTACCACTGTTGCGGTGCTCCAAACCTCCTCCCCACCTCCTTCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS TCA 90 bp | CACAGGTATAGCTGTTATGTCGTTCATACTCGTCCTTGGTCAACGTaGGGGTGCTGCTCATGCTGTAGGTGCTGTCTTTGCTGTCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: HRYSCYVVHTRPWST*GCCSCCRCCLCCPD Trigger: ATCAGGACAGCAAAGACAGCACCTACAGCATGAGCAGCACCCTCACGTTGACCAAGGACGAGTATGAACGACATAACAGCTATACCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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| CDS CAA 72 bp | GCTGTCCTGATCAGTCCAACTGTTCAGGACGCCATTTaGTCGTTCACTGCCATCAATCTTCCACTTGACATT | + |
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Preference number: 6 (lower is better) Translates to: AVLISPTVQDAI*SFTAINLPLDI Trigger: AATGTCAAGTGGAAGATTGATGGCAGTGAACGACAAAATGGCGTCCTGAACAGTTGGACTGATCAGGACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103410.3 |
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