Pregenerated sensors for IGHV9-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094322

Ensembl transcript IDs: ENSMUST00000103482.2, ENSMUST00000194159.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGGCAGTGCTGGCAGAGGTTTCCAAAGAGAAGGCAAACCGTCCCTTaGAGTCTTCTGCATATTTTGGCTCTCCAGAGTGGGTGTTTATCC	+
Preference number: 5 (lower is better) Translates to: RQCWQRFPKRRQTVP*SLLHILALQSGCLS Trigger: GGATAAACACCCACTCTGGAGAGCCAAAATATGCAGAAGACTTCAAGGGACGGTTTGCCTTCTCTTTGGAAACCTCTGCCAGCACTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103482.2 ENSMUST00000194159.2
CDS TCA 72 bp	TGGCAGAGGTTTCCAAAGAGAAGGCAAACCGTCCCTTaGAGTCTTCTGCATATTTTGGCTCTCCAGAGTGGG	+
Preference number: 6 (lower is better) Translates to: WQRFPKRRQTVP*SLLHILALQSG Trigger: CCCACTCTGGAGAGCCAAAATATGCAGAAGACTTCAAGGGACGGTTTGCCTTCTCTTTGGAAACCTCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103482.2 ENSMUST00000194159.2
CDS TCA 72 bp	CCAGACTGCACCAACTGGATCTGTGCTTGGATACTTTaGGCTGCTGCCATGAGAAATAGCAAGTTCCACAGC	+
Preference number: 6 (lower is better) Translates to: PDCTNWICAWIL*AAAMRNSKFHS Trigger: GCTGTGGAACTTGCTATTTCTCATGGCAGCAGCTCAAAGTATCCAAGCACAGATCCAGTTGGTGCAGTCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194159.2
CDS CAA 72 bp	CTGGCAGAGGTTTCCAAAGAGAAGGCAAACCGTCCCTaGAAGTCTTCTGCATATTTTGGCTCTCCAGAGTGG	+
Preference number: 6 (lower is better) Translates to: LAEVSKEKANRP*KSSAYFGSPEW Trigger: CCACTCTGGAGAGCCAAAATATGCAGAAGACTTCAAGGGACGGTTTGCCTTCTCTTTGGAAACCTCTGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103482.2 ENSMUST00000194159.2
CDS CCA 72 bp	GGTGTTTATCCAGCCAATCCACTTAAAACCCTTTCCTaGCATCTTTTGCACCCACTGCATTCCAGCAGTTGT	+
Preference number: 6 (lower is better) Translates to: GVYPANPLKTLS*HLLHPLHSSSC Trigger: ACAACTGCTGGAATGCAGTGGGTGCAAAAGATGCCAGGAAAGGGTTTTAAGTGGATTGGCTGGATAAACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103482.2 ENSMUST00000194159.2
CDS CCA 72 bp	CCCTTGAAGTCTTCTGCATATTTTGGCTCTCCAGAGTaGGTGTTTATCCAGCCAATCCACTTAAAACCCTTT	+
Preference number: 6 (lower is better) Translates to: PLKSSAYFGSPE*VFIQPIHLKPF Trigger: AAAGGGTTTTAAGTGGATTGGCTGGATAAACACCCACTCTGGAGAGCCAAAATATGCAGAAGACTTCAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103482.2 ENSMUST00000194159.2

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