Pregenerated sensors for IGHV9-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096459

Ensembl transcript IDs: ENSMUST00000103473.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGGCAGTGCTGGCAGAGGTTTCCAAAGAGAAGGCAAACCGTCCCTTaGAGTCATCAGCATATGTTGGCACTCCAGAGTAGGTGTTTATCC	+
Preference number: 5 (lower is better) Translates to: RQCWQRFPKRRQTVP*SHQHMLALQSRCLS Trigger: GGATAAACACCTACTCTGGAGTGCCAACATATGCTGATGACTTCAAGGGACGGTTTGCCTTCTCTTTGGAAACCTCTGCCAGCACTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103473.2
CDS CCA 72 bp	CCAGACTGTACCAACTGGATCTGTGCTTGGGCACTTTaGGCAGCTGCCATCAGGAATAGCAAGTTCCACAGC	+
Preference number: 6 (lower is better) Translates to: PDCTNWICAWAL*AAAIRNSKFHS Trigger: GCTGTGGAACTTGCTATTCCTGATGGCAGCTGCCCAAAGTGCCCAAGCACAGATCCAGTTGGTACAGTCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103473.2
CDS CCA 72 bp	AGCTCAGGTCCAGACTGTACCAACTGGATCTGTGCTTaGGCACTTTGGGCAGCTGCCATCAGGAATAGCAAG	+
Preference number: 6 (lower is better) Translates to: SSGPDCTNWICA*ALWAAAIRNSK Trigger: CTTGCTATTCCTGATGGCAGCTGCCCAAAGTGCCCAAGCACAGATCCAGTTGGTACAGTCTGGACCTGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103473.2
CDS TCA 72 bp	TGGCAGAGGTTTCCAAAGAGAAGGCAAACCGTCCCTTaGAGTCATCAGCATATGTTGGCACTCCAGAGTAGG	+
Preference number: 6 (lower is better) Translates to: WQRFPKRRQTVP*SHQHMLALQSR Trigger: CCTACTCTGGAGTGCCAACATATGCTGATGACTTCAAGGGACGGTTTGCCTTCTCTTTGGAAACCTCTGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103473.2
CDS CCA 72 bp	GAAGGCAAACCGTCCCTTGAAGTCATCAGCATATGTTaGCACTCCAGAGTAGGTGTTTATCCAGCCCATCCA	+
Preference number: 6 (lower is better) Translates to: EGKPSLEVISIC*HSRVGVYPAHP Trigger: TGGATGGGCTGGATAAACACCTACTCTGGAGTGCCAACATATGCTGATGACTTCAAGGGACGGTTTGCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103473.2

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