Pregenerated sensors for IGHV9-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096805Ensembl transcript IDs: ENSMUST00000103471.2, ENSMUST00000195884.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGCAGTGCTGGCAGAGGTCTCCAAAGAGAAGGCAAACCGTCCCTTaGACTCTTCAGCATATGTTGGCTCTCCAGTGTCGGTGTATATCA | + |
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Preference number: 5 (lower is better) Translates to: RQCWQRSPKRRQTVP*TLQHMLALQCRCIS Trigger: TGATATACACCGACACTGGAGAGCCAACATATGCTGAAGAGTTCAAGGGACGGTTTGCCTTCTCTTTGGAGACCTCTGCCAGCACTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103471.2 ENSMUST00000195884.2 |
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| CDS TCA 72 bp | TGGCAGAGGTCTCCAAAGAGAAGGCAAACCGTCCCTTaGACTCTTCAGCATATGTTGGCTCTCCAGTGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: WQRSPKRRQTVP*TLQHMLALQCR Trigger: CCGACACTGGAGAGCCAACATATGCTGAAGAGTTCAAGGGACGGTTTGCCTTCTCTTTGGAGACCTCTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103471.2 ENSMUST00000195884.2 |
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| CDS CAA 72 bp | CTGGCAGAGGTCTCCAAAGAGAAGGCAAACCGTCCCTaGAACTCTTCAGCATATGTTGGCTCTCCAGTGTCG | + |
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Preference number: 6 (lower is better) Translates to: LAEVSKEKANRP*NSSAYVGSPVS Trigger: CGACACTGGAGAGCCAACATATGCTGAAGAGTTCAAGGGACGGTTTGCCTTCTCTTTGGAGACCTCTGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103471.2 ENSMUST00000195884.2 |
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| CDS CCA 72 bp | GAAGGCAAACCGTCCCTTGAACTCTTCAGCATATGTTaGCTCTCCAGTGTCGGTGTATATCATGCCCATCCA | + |
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Preference number: 6 (lower is better) Translates to: EGKPSLELFSIC*LSSVGVYHAHP Trigger: TGGATGGGCATGATATACACCGACACTGGAGAGCCAACATATGCTGAAGAGTTCAAGGGACGGTTTGCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103471.2 ENSMUST00000195884.2 |
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