Pregenerated sensors for IGHV8-9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095117

Ensembl transcript IDs: ENSMUST00000103533.2, ENSMUST00000197803.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTGCTCAGTGAAAACACAGAGAAAGAACAGGTCAGACTGAGGGTCTaGGAGGGCTGCAATATACCAGGGCCAGACTCTTTCAGAGTAACC	+
Preference number: 5 (lower is better) Translates to: VLSENTEKEQVRLRV*EGCNIPGPDSFRVT Trigger: GGTTACTCTGAAAGAGTCTGGCCCTGGTATATTGCAGCCCTCCCAGACCCTCAGTCTGACCTGTTCTTTCTCTGTGTTTTCACTGAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103533.2 ENSMUST00000197803.2
CDS CAA 72 bp	TATGTGGCAGTATCTGCAGTGTCCACAGTGGTGATCTaGAGGAATACCTGGTTGTTGGAGGTATCCTTGGAG	+
Preference number: 6 (lower is better) Translates to: YVAVSAVSTVVI*RNTWLLEVSLE Trigger: CTCCAAGGATACCTCCAACAACCAGGTATTCCTCAAGATCACCACTGTGGACACTGCAGATACTGCCACATA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103533.2 ENSMUST00000197803.2
CDS CAA 72 bp	GTGATCTTGAGGAATACCTGGTTGTTGGAGGTATCCTaGGAGATTGTGAGCCGGCTCTTCAAGGATGGTTTA	+
Preference number: 6 (lower is better) Translates to: VILRNTWLLEVS*EIVSRLFKDGL Trigger: TAAACCATCCTTGAAGAGCCGGCTCACAATCTCCAAGGATACCTCCAACAACCAGGTATTCCTCAAGATCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103533.2 ENSMUST00000197803.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu