Pregenerated sensors for IGHV3-6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076672

Ensembl transcript IDs: ENSMUST00000103481.3, ENSMUST00000195124.6

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCAGGTGAGAGACAGAGACTGAGAAGGTTTCACGAGGCCAGGTCCTaGCTCCTGAAGCTGTACATCAGACAGGACAGGAATGGCTGTCAA	+
Preference number: 5 (lower is better) Translates to: AGERQRLRRFHEARS*LLKLYIRQDRNGCQ Trigger: TTGACAGCCATTCCTGTCCTGTCTGATGTACAGCTTCAGGAGTCAGGACCTGGCCTCGTGAAACCTTCTCAGTCTCTGTCTCTCACCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103481.3
CDS TCA 90 bp	GCAGGTGAGAGACAGAGACTGAGAAGGTTTCACGAGGCCAGGTCCTaGCTCCTGAAGCTGTACATCAGACAGGATACCAGGAATGGCTGT	+
Preference number: 5 (lower is better) Translates to: AGERQRLRRFHEARS*LLKLYIRQDTRNGC Trigger: ACAGCCATTCCTGGTATCCTGTCTGATGTACAGCTTCAGGAGTCAGGACCTGGCCTCGTGAAACCTTCTCAGTCTCTGTCTCTCACCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195124.6
CDS CCA 90 bp	GTTCTTAGATGTGTCACGAGTGATGGAGATTCGATTTTTGAGAGATaGGTTGTAGTTATTGCTACCATCGTAGCTTATGTAGCCCATCCA	+
Preference number: 5 (lower is better) Translates to: VLRCVTSDGDSIFER*VVVIATIVAYVAHP Trigger: TGGATGGGCTACATAAGCTACGATGGTAGCAATAACTACAACCCATCTCTCAAAAATCGAATCTCCATCACTCGTGACACATCTAAGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103481.3 ENSMUST00000195124.6
CDS TCA 72 bp	AGACAGAGACTGAGAAGGTTTCACGAGGCCAGGTCCTaGCTCCTGAAGCTGTACATCAGACAGGATACCAGG	+
Preference number: 6 (lower is better) Translates to: RQRLRRFHEARS*LLKLYIRQDTR Trigger: CCTGGTATCCTGTCTGATGTACAGCTTCAGGAGTCAGGACCTGGCCTCGTGAAACCTTCTCAGTCTCTGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195124.6
CDS TCA 72 bp	AGACAGAGACTGAGAAGGTTTCACGAGGCCAGGTCCTaGCTCCTGAAGCTGTACATCAGACAGGACAGGAAT	+
Preference number: 6 (lower is better) Translates to: RQRLRRFHEARS*LLKLYIRQDRN Trigger: ATTCCTGTCCTGTCTGATGTACAGCTTCAGGAGTCAGGACCTGGCCTCGTGAAACCTTCTCAGTCTCTGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103481.3
CDS CCA 72 bp	CTGACTCCTGAAGCTGTACATCAGACAGGACAGGAATaGCTGTCAACAGGTACAACAGACTCAACACTTTCA	+
Preference number: 6 (lower is better) Translates to: LTPEAVHQTGQE*LSTGTTDSTLS Trigger: TGAAAGTGTTGAGTCTGTTGTACCTGTTGACAGCCATTCCTGTCCTGTCTGATGTACAGCTTCAGGAGTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103481.3
CDS CCA 72 bp	TCCTCAGTAGTCACAGAATTCAACTTCAGGAAAAACTaGTTCTTAGATGTGTCACGAGTGATGGAGATTCGA	+
Preference number: 6 (lower is better) Translates to: SSVVTEFNFRKN*FLDVSRVMEIR Trigger: TCGAATCTCCATCACTCGTGACACATCTAAGAACCAGTTTTTCCTGAAGTTGAATTCTGTGACTACTGAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103481.3 ENSMUST00000195124.6
CDS CCA 72 bp	TGTGTCACGAGTGATGGAGATTCGATTTTTGAGAGATaGGTTGTAGTTATTGCTACCATCGTAGCTTATGTA	+
Preference number: 6 (lower is better) Translates to: CVTSDGDSIFER*VVVIATIVAYV Trigger: TACATAAGCTACGATGGTAGCAATAACTACAACCCATCTCTCAAAAATCGAATCTCCATCACTCGTGACACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103481.3 ENSMUST00000195124.6

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