Pregenerated sensors for IGHV3-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103939

Ensembl transcript IDs: ENSMUST00000193408.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GTTCTTGGAAGTGTCTCTAGTGATGGAGATTCGACTTTTGAGAGATaGATTGCTGTCAGTGCTACCACTGGAGCTTATGTACCCTATCCA	+
Preference number: 5 (lower is better) Translates to: VLGSVSSDGDSTFER*IAVSATTGAYVPYP Trigger: TGGATAGGGTACATAAGCTCCAGTGGTAGCACTGACAGCAATCCATCTCTCAAAAGTCGAATCTCCATCACTAGAGACACTTCCAAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193408.2
CDS CCA 72 bp	TCTTCAGTAGTCACAGAGTTCAACTGCAGGAATAACTaGTTCTTGGAAGTGTCTCTAGTGATGGAGATTCGA	+
Preference number: 6 (lower is better) Translates to: SSVVTEFNCRNN*FLEVSLVMEIR Trigger: TCGAATCTCCATCACTAGAGACACTTCCAAGAACCAGTTATTCCTGCAGTTGAACTCTGTGACTACTGAAGA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193408.2
CDS CAA 72 bp	GTAGTCACAGAGTTCAACTGCAGGAATAACTGGTTCTaGGAAGTGTCTCTAGTGATGGAGATTCGACTTTTG	+
Preference number: 6 (lower is better) Translates to: VVTEFNCRNNWF*EVSLVMEIRLL Trigger: CAAAAGTCGAATCTCCATCACTAGAGACACTTCCAAGAACCAGTTATTCCTGCAGTTGAACTCTGTGACTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193408.2

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