Pregenerated sensors for IGHV2-9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096638

Ensembl transcript IDs: ENSMUST00000103451.5

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCTCTTGGAGTTGTCTTTGCTGATGCTCAGTCTGGACATGAGAGCTaGATTATAATTTGTGCTTCCACCACCCCATATTACTCCCAGCCA	+
Preference number: 5 (lower is better) Translates to: ALGVVFADAQSGHES*IIICASTTPYYSQP Trigger: TGGCTGGGAGTAATATGGGGTGGTGGAAGCACAAATTATAATTCAGCTCTCATGTCCAGACTGAGCATCAGCAAAGACAACTCCAAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103451.5
CDS TCA 72 bp	GTTGTCTTTGCTGATGCTCAGTCTGGACATGAGAGCTaGATTATAATTTGTGCTTCCACCACCCCATATTAC	+
Preference number: 6 (lower is better) Translates to: VVFADAQSGHES*IIICASTTPYY Trigger: GTAATATGGGGTGGTGGAAGCACAAATTATAATTCAGCTCTCATGTCCAGACTGAGCATCAGCAAAGACAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103451.5
CDS CAA 90 bp	GTGTCATCAGTTTGCAGACTGTTCATTTTTAAGAAAACTTGGCTCTaGGAGTTGTCTTTGCTGATGCTCAGTCTGGACATGAGAGCTGAA	+
Preference number: 6 (lower is better) Translates to: VSSVCRLFIFKKTWL*ELSLLMLSLDMRAE Trigger: TTCAGCTCTCATGTCCAGACTGAGCATCAGCAAAGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTGCAAACTGATGACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103451.5
CDS CAA 72 bp	AGACTGTTCATTTTTAAGAAAACTTGGCTCTTGGAGTaGTCTTTGCTGATGCTCAGTCTGGACATGAGAGCT	+
Preference number: 6 (lower is better) Translates to: RLFIFKKTWLLE*SLLMLSLDMRA Trigger: AGCTCTCATGTCCAGACTGAGCATCAGCAAAGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103451.5
CDS CAA 72 bp	GTTTGCAGACTGTTCATTTTTAAGAAAACTTGGCTCTaGGAGTTGTCTTTGCTGATGCTCAGTCTGGACATG	+
Preference number: 6 (lower is better) Translates to: VCRLFIFKKTWL*ELSLLMLSLDM Trigger: CATGTCCAGACTGAGCATCAGCAAAGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTGCAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103451.5

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