Pregenerated sensors for IGHV2-6-8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076646

Ensembl transcript IDs: ENSMUST00000103455.3, ENSMUST00000192911.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGGCTCTGTGAGGGCGCCACCAGGCCAGGTCCTGACTCCTTCAGCTaGACCTGGGAAAGGATACAGCTTGGGAAAGTCACCAGGCAGAGG	+
Preference number: 5 (lower is better) Translates to: RLCEGATRPGPDSFS*TWERIQLGKVTRQR Trigger: CCTCTGCCTGGTGACTTTCCCAAGCTGTATCCTTTCCCAGGTGCAGCTGAAGGAGTCAGGACCTGGCCTGGTGGCGCCCTCACAGAGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192911.2
CDS GCA 90 bp	AGGCTCTGTGAGGGCGCCACCAGGCCAGGTCCTGACTCCTTCAGCTaGACCTGGGAAAGGATACTTGGGAAAGTCACCAGGCAGAGGAGT	+
Preference number: 5 (lower is better) Translates to: RLCEGATRPGPDSFS*TWERILGKVTRQRS Trigger: ACTCCTCTGCCTGGTGACTTTCCCAAGTATCCTTTCCCAGGTGCAGCTGAAGGAGTCAGGACCTGGCCTGGTGGCGCCCTCACAGAGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103455.3
CDS TCA 90 bp	GCTCTTGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCTaGATTATAATTTGTGCTTCCAACACCCCATATTACTCCCAGCCA	+
Preference number: 5 (lower is better) Translates to: ALGVVLADAQSGFES*IIICASNTPYYSQP Trigger: TGGCTGGGAGTAATATGGGGTGTTGGAAGCACAAATTATAATTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103455.3 ENSMUST00000192911.2
CDS CCA 90 bp	ATGGCTGTGTCATCAGTTTGCAGACTGTTCATTTTTAAGAAAACTTaGCTCTTGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGA	+
Preference number: 5 (lower is better) Translates to: MAVSSVCRLFIFKKT*LLELSLLMLSLDLR Trigger: TCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTGCAAACTGATGACACAGCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103455.3 ENSMUST00000192911.2
CDS GCA 72 bp	GAGGGCGCCACCAGGCCAGGTCCTGACTCCTTCAGCTaGACCTGGGAAAGGATACTTGGGAAAGTCACCAGG	+
Preference number: 6 (lower is better) Translates to: EGATRPGPDSFS*TWERILGKVTR Trigger: CCTGGTGACTTTCCCAAGTATCCTTTCCCAGGTGCAGCTGAAGGAGTCAGGACCTGGCCTGGTGGCGCCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103455.3
CDS GCA 72 bp	GAGGGCGCCACCAGGCCAGGTCCTGACTCCTTCAGCTaGACCTGGGAAAGGATACAGCTTGGGAAAGTCACC	+
Preference number: 6 (lower is better) Translates to: EGATRPGPDSFS*TWERIQLGKVT Trigger: GGTGACTTTCCCAAGCTGTATCCTTTCCCAGGTGCAGCTGAAGGAGTCAGGACCTGGCCTGGTGGCGCCCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192911.2
CDS CAA 90 bp	GTGTCATCAGTTTGCAGACTGTTCATTTTTAAGAAAACTTGGCTCTaGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCTGAA	+
Preference number: 6 (lower is better) Translates to: VSSVCRLFIFKKTWL*ELSLLMLSLDLRAE Trigger: TTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTGCAAACTGATGACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103455.3 ENSMUST00000192911.2
CDS TCA 72 bp	GTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCTaGATTATAATTTGTGCTTCCAACACCCCATATTAC	+
Preference number: 6 (lower is better) Translates to: VVLADAQSGFES*IIICASNTPYY Trigger: GTAATATGGGGTGTTGGAAGCACAAATTATAATTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103455.3 ENSMUST00000192911.2
CDS CAA 72 bp	GTTTGCAGACTGTTCATTTTTAAGAAAACTTGGCTCTaGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTG	+
Preference number: 6 (lower is better) Translates to: VCRLFIFKKTWL*ELSLLMLSLDL Trigger: CAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTGCAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103455.3 ENSMUST00000192911.2