Pregenerated sensors for IGHV2-6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096670

Ensembl transcript IDs: ENSMUST00000179657.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCTCTTGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCTaGATTATAGGTTGTGCTTCCATCACTCCATATCACTACCAGCCA	+
Preference number: 5 (lower is better) Translates to: ALGVVLADAQSGFES*IIGCASITPYHYQP Trigger: TGGCTGGTAGTGATATGGAGTGATGGAAGCACAACCTATAATTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179657.2
CDS CCA 90 bp	ATGGCTGTGTCATCAGTTTGGAGACTGTTCATTTTTAAGAAAACTTaGCTCTTGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGA	+
Preference number: 5 (lower is better) Translates to: MAVSSVWRLFIFKKT*LLELSLLMLSLDLR Trigger: TCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTCCAAACTGATGACACAGCCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179657.2
CDS TCA 72 bp	GTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCTaGATTATAGGTTGTGCTTCCATCACTCCATATCAC	+
Preference number: 6 (lower is better) Translates to: VVLADAQSGFES*IIGCASITPYH Trigger: GTGATATGGAGTGATGGAAGCACAACCTATAATTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179657.2
CDS CAA 90 bp	GTGTCATCAGTTTGGAGACTGTTCATTTTTAAGAAAACTTGGCTCTaGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCTGAA	+
Preference number: 6 (lower is better) Translates to: VSSVWRLFIFKKTWL*ELSLLMLSLDLRAE Trigger: TTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTCCAAACTGATGACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179657.2
CDS CAA 72 bp	AGACTGTTCATTTTTAAGAAAACTTGGCTCTTGGAGTaGTCCTTGCTGATGCTCAGTCTGGATTTGAGAGCT	+
Preference number: 6 (lower is better) Translates to: RLFIFKKTWLLE*SLLMLSLDLRA Trigger: AGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179657.2
CDS CAA 72 bp	GTTTGGAGACTGTTCATTTTTAAGAAAACTTGGCTCTaGGAGTTGTCCTTGCTGATGCTCAGTCTGGATTTG	+
Preference number: 6 (lower is better) Translates to: VWRLFIFKKTWL*ELSLLMLSLDL Trigger: CAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAACAGTCTCCAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179657.2
CDS CAA 72 bp	TTCATTTTTAAGAAAACTTGGCTCTTGGAGTTGTCCTaGCTGATGCTCAGTCTGGATTTGAGAGCTGAATTA	+
Preference number: 6 (lower is better) Translates to: FIFKKTWLLELS*LMLSLDLRAEL Trigger: TAATTCAGCTCTCAAATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTAAAAATGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179657.2

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