Pregenerated sensors for IGHV2-5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096498Ensembl transcript IDs: ENSMUST00000103449.4, ENSMUST00000195707.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTCTTGGAGTTGTCCTTGGTGATGCTCAGTCTGGACATGAAAGCTaGATTGTAGTCTGTGCTTCCACCTCTCCATATCACTCCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ALGVVLGDAQSGHES*IVVCASTSPYHSQP Trigger: TGGCTGGGAGTGATATGGAGAGGTGGAAGCACAGACTACAATGCAGCTTTCATGTCCAGACTGAGCATCACCAAGGACAACTCCAAGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103449.4 ENSMUST00000195707.3 |
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| CDS GCA 72 bp | GAGGGCTGCACTAGGCCAGGTCCTGACTGCTTCAGCTaGACCTGGGATAGGACACTTGGGAATGTCACCAGG | + |
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Preference number: 6 (lower is better) Translates to: EGCTRPGPDCFS*TWDRTLGNVTR Trigger: CCTGGTGACATTCCCAAGTGTCCTATCCCAGGTGCAGCTGAAGCAGTCAGGACCTGGCCTAGTGCAGCCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103449.4 |
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| CDS GCA 72 bp | GTTGTCCTTGGTGATGCTCAGTCTGGACATGAAAGCTaGATTGTAGTCTGTGCTTCCACCTCTCCATATCAC | + |
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Preference number: 6 (lower is better) Translates to: VVLGDAQSGHES*IVVCASTSPYH Trigger: GTGATATGGAGAGGTGGAAGCACAGACTACAATGCAGCTTTCATGTCCAGACTGAGCATCACCAAGGACAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103449.4 ENSMUST00000195707.3 |
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| CDS CAA 90 bp | GTGTCATCAGCTTGCAGACTGTTCATTTTAAAGAAAACTTGGCTCTaGGAGTTGTCCTTGGTGATGCTCAGTCTGGACATGAAAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: VSSACRLFILKKTWL*ELSLVMLSLDMKAA Trigger: TGCAGCTTTCATGTCCAGACTGAGCATCACCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGCTGATGACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103449.4 ENSMUST00000195707.3 |
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| CDS CAA 72 bp | TTCATTTTAAAGAAAACTTGGCTCTTGGAGTTGTCCTaGGTGATGCTCAGTCTGGACATGAAAGCTGCATTG | + |
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Preference number: 6 (lower is better) Translates to: FILKKTWLLELS*VMLSLDMKAAL Trigger: CAATGCAGCTTTCATGTCCAGACTGAGCATCACCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103449.4 ENSMUST00000195707.3 |
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