Pregenerated sensors for IGHV2-4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095866

Ensembl transcript IDs: ENSMUST00000103447.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	GTGTCATCAGCTTGCAGACTGTTCATTTTAAAGAAAACTTGGCTCTaGGAGTTGTCCTTGCTGATGCTCAGTCTGGATATGAAAGCAGCA	+
Preference number: 6 (lower is better) Translates to: VSSACRLFILKKTWL*ELSLLMLSLDMKAA Trigger: TGCTGCTTTCATATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGCTGATGACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103447.2
CDS CAA 72 bp	GCTTGCAGACTGTTCATTTTAAAGAAAACTTGGCTCTaGGAGTTGTCCTTGCTGATGCTCAGTCTGGATATG	+
Preference number: 6 (lower is better) Translates to: ACRLFILKKTWL*ELSLLMLSLDM Trigger: CATATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103447.2
CDS CAA 72 bp	GTCATCAGCTTGCAGACTGTTCATTTTAAAGAAAACTaGGCTCTTGGAGTTGTCCTTGCTGATGCTCAGTCT	+
Preference number: 6 (lower is better) Translates to: VISLQTVHFKEN*ALGVVLADAQS Trigger: AGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGCTGATGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103447.2
CDS CAA 90 bp	TATGGCAGTGTCATCAGCTTGCAGACTGTTCATTTTAAAGAAAACTaGGCTCTTGGAGTTGTCCTTGCTGATGCTCAGTCTGGATATGAA	+
Preference number: 6 (lower is better) Translates to: YGSVISLQTVHFKEN*ALGVVLADAQSGYE Trigger: TTCATATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGCTGATGACACTGCCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103447.2
CDS CAA 72 bp	TTCATTTTAAAGAAAACTTGGCTCTTGGAGTTGTCCTaGCTGATGCTCAGTCTGGATATGAAAGCAGCATTA	+
Preference number: 6 (lower is better) Translates to: FILKKTWLLELS*LMLSLDMKAAL Trigger: TAATGCTGCTTTCATATCCAGACTGAGCATCAGCAAGGACAACTCCAAGAGCCAAGTTTTCTTTAAAATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103447.2

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