Pregenerated sensors for IGHV2-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094164

Ensembl transcript IDs: ENSMUST00000178229.3

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCTCTTGGAGTTATCCTTGCTGATGCTCAGTCTGGATATGAGAGCTaGATGATAATTTGTGCTCCCGTCACCCCATATTACTCCCAGCCA	+
Preference number: 5 (lower is better) Translates to: ALGVILADAQSGYES*MIICAPVTPYYSQP Trigger: TGGCTGGGAGTAATATGGGGTGACGGGAGCACAAATTATCATTCAGCTCTCATATCCAGACTGAGCATCAGCAAGGATAACTCCAAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178229.3
CDS CCA 90 bp	GTGGCTGTGTCATCAGTTTGCAGACTGTTCAGTTTTAAGAAAACTTaGCTCTTGGAGTTATCCTTGCTGATGCTCAGTCTGGATATGAGA	+
Preference number: 5 (lower is better) Translates to: VAVSSVCRLFSFKKT*LLELSLLMLSLDMR Trigger: TCTCATATCCAGACTGAGCATCAGCAAGGATAACTCCAAGAGCCAAGTTTTCTTAAAACTGAACAGTCTGCAAACTGATGACACAGCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178229.3
CDS TCA 72 bp	GTTATCCTTGCTGATGCTCAGTCTGGATATGAGAGCTaGATGATAATTTGTGCTCCCGTCACCCCATATTAC	+
Preference number: 6 (lower is better) Translates to: VILADAQSGYES*MIICAPVTPYY Trigger: GTAATATGGGGTGACGGGAGCACAAATTATCATTCAGCTCTCATATCCAGACTGAGCATCAGCAAGGATAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178229.3

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