Pregenerated sensors for IGHV2-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096464Ensembl transcript IDs: ENSMUST00000103443.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTCTTGGAATTGTCCTTGCTGATGCTCAGTCTGGATATGAAAGCTaGATTATAGTCTGTGCTTCCACCACTCCATATCACTCCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ALGIVLADAQSGYES*IIVCASTTPYHSQP Trigger: TGGCTGGGAGTGATATGGAGTGGTGGAAGCACAGACTATAATGCAGCTTTCATATCCAGACTGAGCATCAGCAAGGACAATTCCAAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103443.3 |
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| CDS GCA 72 bp | GAGGGCTGCACTAGGCCAGGTCCTGACTGCTTCAGCTaGACCTGGGATAGGACACAGCTTGGGAATGTCACC | + |
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Preference number: 6 (lower is better) Translates to: EGCTRPGPDCFS*TWDRTQLGNVT Trigger: GGTGACATTCCCAAGCTGTGTCCTATCCCAGGTGCAGCTGAAGCAGTCAGGACCTGGCCTAGTGCAGCCCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103443.3 |
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| CDS CAA 90 bp | GTGTCATCAGCTTGCAGACTGTTCATTTTAAAGAAAACTTGGCTCTaGGAATTGTCCTTGCTGATGCTCAGTCTGGATATGAAAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: VSSACRLFILKKTWL*ELSLLMLSLDMKAA Trigger: TGCAGCTTTCATATCCAGACTGAGCATCAGCAAGGACAATTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGCTGATGACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103443.3 |
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| CDS CAA 72 bp | GCTTGCAGACTGTTCATTTTAAAGAAAACTTGGCTCTaGGAATTGTCCTTGCTGATGCTCAGTCTGGATATG | + |
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Preference number: 6 (lower is better) Translates to: ACRLFILKKTWL*ELSLLMLSLDM Trigger: CATATCCAGACTGAGCATCAGCAAGGACAATTCCAAGAGCCAAGTTTTCTTTAAAATGAACAGTCTGCAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103443.3 |
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| CDS CAA 72 bp | TTCATTTTAAAGAAAACTTGGCTCTTGGAATTGTCCTaGCTGATGCTCAGTCTGGATATGAAAGCTGCATTA | + |
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Preference number: 6 (lower is better) Translates to: FILKKTWLLELS*LMLSLDMKAAL Trigger: TAATGCAGCTTTCATATCCAGACTGAGCATCAGCAAGGACAATTCCAAGAGCCAAGTTTTCTTTAAAATGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103443.3 |
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