Pregenerated sensors for IGHV15-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076688

Ensembl transcript IDs: ENSMUST00000103497.2, ENSMUST00000195337.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACTGAAGACCCAGGACTCCTCAGTTCAGAACCAGACTGTTGTAGGTaGACCTGGGATTGGATACCTGCTGCTGCCAGCAGATGGAGAGTG	+
Preference number: 5 (lower is better) Translates to: TEDPGLLSSEPDCCR*TWDWIPAAASRWRV Trigger: CACTCTCCATCTGCTGGCAGCAGCAGGTATCCAATCCCAGGTTCACCTACAACAGTCTGGTTCTGAACTGAGGAGTCCTGGGTCTTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103497.2
CDS TCA 90 bp	ACTGAAGACCCAGGACTCCTCAGTTCAGAACCAGACTGTTGTAGGTaGACCTGGGATTGGATACCTGTAGCTGCTGCCAGCAGATGGAGA	+
Preference number: 5 (lower is better) Translates to: TEDPGLLSSEPDCCR*TWDWIPVAAASRWR Trigger: TCTCCATCTGCTGGCAGCAGCTACAGGTATCCAATCCCAGGTTCACCTACAACAGTCTGGTTCTGAACTGAGGAGTCCTGGGTCTTCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000195337.2
CDS GCA 90 bp	TGTCAGACTGTTGAGCTCCAAGTAGGCTGTGTTGGACAGTGTGTCTaGATCCAATGTGGCTTTGTCCTCAAACTTCTCTCCATAGATTGT	+
Preference number: 5 (lower is better) Translates to: CQTVELQVGCVGQCV*IQCGFVLKLLSIDC Trigger: ACAATCTATGGAGAGAAGTTTGAGGACAAAGCCACATTGGATGCAGACACACTGTCCAACACAGCCTACTTGGAGCTCAACAGTCTGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS CCA 90 bp	GGCTTTGTCCTCAAACTTCTCTCCATAGATTGTTCTACCAATACTTaGGAGTATGCCTCCAATCCATTCAAATCCATGCCCAGGCTTCTG	+
Preference number: 5 (lower is better) Translates to: GFVLKLLSIDCSTNT*EYASNPFKSMPRLL Trigger: CAGAAGCCTGGGCATGGATTTGAATGGATTGGAGGCATACTCCCAAGTATTGGTAGAACAATCTATGGAGAGAAGTTTGAGGACAAAGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS CCA 72 bp	AGTAGGCTGTGTTGGACAGTGTGTCTGCATCCAATGTaGCTTTGTCCTCAAACTTCTCTCCATAGATTGTTC	+
Preference number: 6 (lower is better) Translates to: SRLCWTVCLHPM*LCPQTSLHRLF Trigger: GAACAATCTATGGAGAGAAGTTTGAGGACAAAGCCACATTGGATGCAGACACACTGTCCAACACAGCCTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS CAA 90 bp	TGGCTTTGTCCTCAAACTTCTCTCCATAGATTGTTCTACCAATACTaGGGAGTATGCCTCCAATCCATTCAAATCCATGCCCAGGCTTCT	+
Preference number: 6 (lower is better) Translates to: WLCPQTSLHRLFYQY*GVCLQSIQIHAQAS Trigger: AGAAGCCTGGGCATGGATTTGAATGGATTGGAGGCATACTCCCAAGTATTGGTAGAACAATCTATGGAGAGAAGTTTGAGGACAAAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS GCA 72 bp	TCTCTCCATAGATTGTTCTACCAATACTTGGGAGTATaGCTCCAATCCATTCAAATCCATGCCCAGGCTTCT	+
Preference number: 6 (lower is better) Translates to: SLHRLFYQYLGV*LQSIQIHAQAS Trigger: AGAAGCCTGGGCATGGATTTGAATGGATTGGAGGCATACTCCCAAGTATTGGTAGAACAATCTATGGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS CAA 72 bp	CCAATGTGGCTTTGTCCTCAAACTTCTCTCCATAGATaGTTCTACCAATACTTGGGAGTATGCCTCCAATCC	+
Preference number: 6 (lower is better) Translates to: PMWLCPQTSLHR*FYQYLGVCLQS Trigger: GGATTGGAGGCATACTCCCAAGTATTGGTAGAACAATCTATGGAGAGAAGTTTGAGGACAAAGCCACATTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS CCA 72 bp	CTCAAACTTCTCTCCATAGATTGTTCTACCAATACTTaGGAGTATGCCTCCAATCCATTCAAATCCATGCCC	+
Preference number: 6 (lower is better) Translates to: LKLLSIDCSTNT*EYASNPFKSMP Trigger: GGGCATGGATTTGAATGGATTGGAGGCATACTCCCAAGTATTGGTAGAACAATCTATGGAGAGAAGTTTGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2
CDS CAA 72 bp	CCTCAAACTTCTCTCCATAGATTGTTCTACCAATACTaGGGAGTATGCCTCCAATCCATTCAAATCCATGCC	+
Preference number: 6 (lower is better) Translates to: PQTSLHRLFYQY*GVCLQSIQIHA Trigger: GGCATGGATTTGAATGGATTGGAGGCATACTCCCAAGTATTGGTAGAACAATCTATGGAGAGAAGTTTGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103497.2 ENSMUST00000195337.2

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