Pregenerated sensors for IGHV14-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095642

Ensembl transcript IDs: ENSMUST00000103469.4

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	CCTGGCCTCACAAGCTCTGCCACAGACTGCTGCAGCTaGACCTCTGAATTGACCCCTGTAACCACTGCCATC	+
Preference number: 6 (lower is better) Translates to: PGLTSSATDCCS*TSELTPVTTAI Trigger: GATGGCAGTGGTTACAGGGGTCAATTCAGAGGTTCAGCTGCAGCAGTCTGTGGCAGAGCTTGTGAGGCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103469.4
CDS TCA 72 bp	AATGTTGAAGCCAGAAGCTGTGCAGGACAACTTGACTaGGGCCCCTGGCCTCACAAGCTCTGCCACAGACTG	+
Preference number: 6 (lower is better) Translates to: NVEARSCAGQLD*GPWPHKLCHRL Trigger: CAGTCTGTGGCAGAGCTTGTGAGGCCAGGGGCCTCAGTCAAGTTGTCCTGCACAGCTTCTGGCTTCAACATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103469.4
CDS CCA 72 bp	TTGGAGGATGTGTCTGCAGTTATAGTGGCCTTGCCCTaGAACTTCGGGGCATATTTAGTATTACCATTCGCA	+
Preference number: 6 (lower is better) Translates to: LEDVSAVIVALP*NFGAYLVLPFA Trigger: TGCGAATGGTAATACTAAATATGCCCCGAAGTTCCAGGGCAAGGCCACTATAACTGCAGACACATCCTCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103469.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu