Pregenerated sensors for IGHV11-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094533

Ensembl transcript IDs: ENSMUST00000103466.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCTGAAGATAGTGAAGCGATCCTTTATGGATGGTGCGTAGTTTATTaGACTGCCATCAGAATTAATGTCTCCAATCCACTCCAGGGTCTT	+
Preference number: 5 (lower is better) Translates to: SEDSEAILYGWCVVY*TAIRINVSNPLQGL Trigger: AAGACCCTGGAGTGGATTGGAGACATTAATTCTGATGGCAGTGCAATAAACTACGCACCATCCATAAAGGATCGCTTCACTATCTTCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103466.2
CDS CAA 72 bp	ACATTGCTCATCTGCAGGTACAGGGTGCTCTTGTCATaGTCTCTGAAGATAGTGAAGCGATCCTTTATGGAT	+
Preference number: 6 (lower is better) Translates to: TLLICRYRVLLS*SLKIVKRSFMD Trigger: ATCCATAAAGGATCGCTTCACTATCTTCAGAGACAATGACAAGAGCACCCTGTACCTGCAGATGAGCAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103466.2
CDS GCA 72 bp	AGTGAAGCGATCCTTTATGGATGGTGCGTAGTTTATTaGACTGCCATCAGAATTAATGTCTCCAATCCACTC	+
Preference number: 6 (lower is better) Translates to: SEAILYGWCVVY*TAIRINVSNPL Trigger: GAGTGGATTGGAGACATTAATTCTGATGGCAGTGCAATAAACTACGCACCATCCATAAAGGATCGCTTCACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103466.2

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