Pregenerated sensors for IGHV1-85 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096150

Ensembl transcript IDs: ENSMUST00000103552.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	TCCATGTACGCTGTGCTGGAGGATGTGTCTACAGTCAATGTGGCCTaGCCCTTGAACTTCTCATTGTACTTAGTACTACCATCTCTAGGA	+
Preference number: 6 (lower is better) Translates to: SMYAVLEDVSTVNVA*PLNFSLYLVLPSLG Trigger: TCCTAGAGATGGTAGTACTAAGTACAATGAGAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACATCCTCCAGCACAGCGTACATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103552.2
CDS CAA 72 bp	GCTGTGCTGGAGGATGTGTCTACAGTCAATGTGGCCTaGCCCTTGAACTTCTCATTGTACTTAGTACTACCA	+
Preference number: 6 (lower is better) Translates to: AVLEDVSTVNVA*PLNFSLYLVLP Trigger: TGGTAGTACTAAGTACAATGAGAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACATCCTCCAGCACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103552.2
CDS CAA 72 bp	CTGGAGGATGTGTCTACAGTCAATGTGGCCTTGCCCTaGAACTTCTCATTGTACTTAGTACTACCATCTCTA	+
Preference number: 6 (lower is better) Translates to: LEDVSTVNVALP*NFSLYLVLPSL Trigger: TAGAGATGGTAGTACTAAGTACAATGAGAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACATCCTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103552.2

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