Pregenerated sensors for IGHV1-84 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094940Ensembl transcript IDs: ENSMUST00000103551.2
Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 72 bp | AGCTCAGGTCCAGACTGCTGCAGCTGGATCTGGCAATaGACACCTGCAGTTCCTGACAGGAGGAAAAGAAAG | + |
Preference number: 6 (lower is better) Translates to: SSGPDCCSWIWQ*TPAVPDRRKRK Trigger: CTTTCTTTTCCTCCTGTCAGGAACTGCAGGTGTCCATTGCCAGATCCAGCTGCAGCAGTCTGGACCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103551.2 |
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CDS CAA 72 bp | GCTGTGCTGGAGGATGTGTCTACAGTCAATGTGGCCTaGCCCTTGAACTTCTCATTGTACTTAGTATTACCG | + |
Preference number: 6 (lower is better) Translates to: AVLEDVSTVNVA*PLNFSLYLVLP Trigger: CGGTAATACTAAGTACAATGAGAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACATCCTCCAGCACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103551.2 |
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CDS CAA 72 bp | CTGGAGGATGTGTCTACAGTCAATGTGGCCTTGCCCTaGAACTTCTCATTGTACTTAGTATTACCGCTTCCA | + |
Preference number: 6 (lower is better) Translates to: LEDVSTVNVALP*NFSLYLVLPLP Trigger: TGGAAGCGGTAATACTAAGTACAATGAGAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACATCCTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103551.2 |