Pregenerated sensors for IGHV1-76 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093896

Ensembl transcript IDs: ENSMUST00000169155.2, ENSMUST00000197537.2

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGGCAGTGCTGGAGGATTTTTCTGCAGTCAGTGTGGCCTTGCCCTTaGACTTCTCATTGTAGTAAGTATTACCACTTCCAGGATAAATCC	+
Preference number: 5 (lower is better) Translates to: RQCWRIFLQSVWPCP*TSHCSKYYHFQDKS Trigger: GGATTTATCCTGGAAGTGGTAATACTTACTACAATGAGAAGTTCAAGGGCAAGGCCACACTGACTGCAGAAAAATCCTCCAGCACTGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000169155.2 ENSMUST00000197537.2
CDS TCA 72 bp	TGGAGGATTTTTCTGCAGTCAGTGTGGCCTTGCCCTTaGACTTCTCATTGTAGTAAGTATTACCACTTCCAG	+
Preference number: 6 (lower is better) Translates to: WRIFLQSVWPCP*TSHCSKYYHFQ Trigger: CTGGAAGTGGTAATACTTACTACAATGAGAAGTTCAAGGGCAAGGCCACACTGACTGCAGAAAAATCCTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000169155.2 ENSMUST00000197537.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu