Pregenerated sensors for IGHV1-71 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096577

Ensembl transcript IDs: ENSMUST00000166645.2, ENSMUST00000196690.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	TGGAGGATTTGTCCGCAGTCAATGTGGCCTTGTCCTTaGATTTCTCATTGTACTTTATACTACCACTTCCAG	+
Preference number: 6 (lower is better) Translates to: WRICPQSMWPCP*ISHCTLYYHFQ Trigger: CTGGAAGTGGTAGTATAAAGTACAATGAGAAATTCAAGGACAAGGCCACATTGACTGCGGACAAATCCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166645.2 ENSMUST00000196690.2
CDS CAA 72 bp	CTGGAGGATTTGTCCGCAGTCAATGTGGCCTTGTCCTaGAATTTCTCATTGTACTTTATACTACCACTTCCA	+
Preference number: 6 (lower is better) Translates to: LEDLSAVNVALS*NFSLYFILPLP Trigger: TGGAAGTGGTAGTATAAAGTACAATGAGAAATTCAAGGACAAGGCCACATTGACTGCGGACAAATCCTCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166645.2 ENSMUST00000196690.2
CDS CAA 72 bp	ACTGTGCTGGAGGATTTGTCCGCAGTCAATGTGGCCTaGTCCTTGAATTTCTCATTGTACTTTATACTACCA	+
Preference number: 6 (lower is better) Translates to: TVLEDLSAVNVA*SLNFSLYFILP Trigger: TGGTAGTATAAAGTACAATGAGAAATTCAAGGACAAGGCCACATTGACTGCGGACAAATCCTCCAGCACAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166645.2 ENSMUST00000196690.2

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