Pregenerated sensors for IGHV1-59 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095197

Ensembl transcript IDs: ENSMUST00000103530.3, ENSMUST00000195359.6

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	GCTGGAGGATGTGTCTACAGTCAATGTGGCCTTGCCCTTGAACTTTaGATTGTAGTTAGTATAACTATCAGAAGGATCAATCACTCCGAT	+
Preference number: 6 (lower is better) Translates to: AGGCVYSQCGLALEL*IVVSITIRRINHSD Trigger: ATCGGAGTGATTGATCCTTCTGATAGTTATACTAACTACAATCAAAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACATCCTCCAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103530.3 ENSMUST00000195359.6
CDS CAA 72 bp	TGTGTCTACAGTCAATGTGGCCTTGCCCTTGAACTTTaGATTGTAGTTAGTATAACTATCAGAAGGATCAAT	+
Preference number: 6 (lower is better) Translates to: CVYSQCGLALEL*IVVSITIRRIN Trigger: ATTGATCCTTCTGATAGTTATACTAACTACAATCAAAAGTTCAAGGGCAAGGCCACATTGACTGTAGACACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103530.3 ENSMUST00000195359.6

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu