Pregenerated sensors for IGHD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000104213Ensembl transcript IDs: ENSMUST00000192250.2, ENSMUST00000194162.6
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGAAACAAACAAACAAACAAACAAACAAATTACCAGGAGGCAGGTaGGGTAGACCACAGCATGCTTATGGAATGATGAGGGCTTGGGGG | + |
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Preference number: 1 (lower is better) Translates to: QKQTNKQTNKLPGGR*GRPQHAYGMMRAWG Trigger: CCCCCAAGCCCTCATCATTCCATAAGCATGCTGTGGTCTACCCCACCTGCCTCCTGGTAATTTGTTTGTTTGTTTGTTTGTTTGTTTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR CCA 90 bp | TACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTTGCCTCTGAATCTGTCTGGGAGTCTAGGTaGAGAGCAGGTATTGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: YPCSSDTHFLQQGLASESVWESR*RAGIER Trigger: CCTCTCAATACCTGCTCTCCACCTAGACTCCCAGAC...AGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR CAA 90 bp | AAGCCTACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTaGCCTCTGAATCTTTCTGATCCTGTTAAAGAGTTCCACTCCCTG | + |
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Preference number: 2 (lower is better) Translates to: KPTRAPVTHTSYNKD*PLNLSDPVKEFHSL Trigger: CAGGGAGTGGAACTCTTTAACAGGATCAGAAAGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTAGGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR TCA 90 bp | CAGTTTCAGGGGTTAGTTCATTTACATCATGGTAGGGAGCATGGTGGTATGCCACCTGACATGAACTTTTaGAACCTGAAAGCCTACCCG | + |
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Preference number: 2 (lower is better) Translates to: QFQGLVHLHHGREHGGMPPDMNF*NLKAYP Trigger: CGGGTAGGCTTTCAGGTTTCAAAAGTTCATGTCAGG...TGGCATACCACCATGCTCCCTACCATGATGTAAATGAACTAACCCCTGAAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR GCA 90 bp | GGTTCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTACTTTTCTCTGTAGTTaGAGGATTCTGCTGTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: GSYSNDHSPHSCHLRLCCTFLCS*RILLSW Trigger: CCAGGACAGCAGAATCCTGCAACTACAGAGAAAAGT...ACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR GCA 90 bp | TACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTTGCCTCTGAATCTCTTGGCATTTCTCTCTaGATAGAAGGTATCTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: YPCSSDTHFLQQGLASESLGISL*IEGIFL Trigger: TAAGAAGATACCTTCTATGCAGAGAGAAATGCCAAG...AGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR CCA 90 bp | TCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTAAAAGGTATCTTCTTAGTTaGCTTCATGTTGAGGGAAAG | + |
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Preference number: 2 (lower is better) Translates to: SYSNDHSPHSCHLRLCCKRYLLS*LHVEGK Trigger: CTTTCCCTCAACATGAAGCCAACTAAGAAGATACCT...TTTACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR CAA 90 bp | CAGTTTCAGGGGTTAGTTCATTTACATCATGGTAGGGAGCATGGTGGTATGCCAGGTGGAGAGCAGGTATaGAGAGGAGGGCCTTGGCAT | + |
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Preference number: 3 (lower is better) Translates to: QFQGLVHLHHGREHGGMPGGEQV*RGGPWH Trigger: ATGCCAAGGCCCTCCTCTCAATACCTGCTCTCCACC...TGGCATACCACCATGCTCCCTACCATGATGTAAATGAACTAACCCCTGAAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR-3UTR CAA 90 bp | TACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTTGCCTCTGAATCTTTAGTTGGCTTCATGTaGAGGGAAAGCACTTTTCTC | + |
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Preference number: 3 (lower is better) Translates to: YPCSSDTHFLQQGLASESLVGFM*RESTFL Trigger: GAGAAAAGTGCTTTCCCTCAACATGAAGCCAACTAA...AGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR CCA 72 bp | AGTCTAGGTGGAGAGCAGGTATTGAGAGGAGGGCCTTaGCATTTCTCTCTGCATAGAAGGTATCTTCTTAGT | + |
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Preference number: 3 (lower is better) Translates to: SLGGEQVLRGGP*HFSLHRRYLLS Trigger: ACTAAGAAGATACCTTCTATGCAGAGAGAAATGCCAAGGCCCTCCTCTCAATACCTGCTCTCCACCTAGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR TCA 72 bp | ATTCAACTATATGAGCCTATGGGGTTCTTATTCAAATaGCCACAGTCCCCATTCCTGTCACCTAAGGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: IQLYEPMGFLFK*PQSPFLSPKAL Trigger: CAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGAACCCCATAGGCTCATATAGTTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR TCA 72 bp | GAGAGTTTAAGGTGGGAGGAGAGTTTCTTAGTTCACTaGACAATTTTCTTCAGTGTGACTCTGATACCCCTC | + |
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Preference number: 3 (lower is better) Translates to: ESLRWEESFLVH*TIFFSVTLIPL Trigger: GAGGGGTATCAGAGTCACACTGAAGAAAATTGTTCAGTGAACTAAGAAACTCTCCTCCCACCTTAAACTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR TCA 72 bp | ATCTTTCTGATCCTGTTAAAGAGTTCCACTCCCTGGTaGCTAAGCATTCAACTATATGAGCCTATGGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: IFLILLKSSTPW*LSIQLYEPMGF Trigger: GAACCCCATAGGCTCATATAGTTGAATGCTTAGTCACCAGGGAGTGGAACTCTTTAACAGGATCAGAAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | AAGCCTACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTTGCCTCTGCACTGTAGAGCAGTGTaGGCAGGAAGAGGGCCACGA | + |
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Preference number: 4 (lower is better) Translates to: KPTRAPVTHTSYNKDLPLHCRAV*AGRGPR Trigger: TCGTGGCCCTCTTCCTGCTCACACTGCTCTACAGTG...CAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTAGGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | GGGAGTCTAGGTGGAGAGCAGGTATTGAGAGGAGGGCCTTGGCATTTCTCTCTGGTGGCTTCTGTGGAGTaGTTCTTTGCTTGGAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: GSLGGEQVLRGGPWHFSLVASVE*FFAWRV Trigger: AACTCTCCAAGCAAAGAATCACTCCACAGAAGCCAC...CAGAGAGAAATGCCAAGGCCCTCCTCTCAATACCTGCTCTCCACCTAGACTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | GGTGGAGAGCAGGTATTGAGAGGAGGGCCTTGGCATTTCTCTCTGCATAGAAGGGATGACATCTCAGGATaGGTGGATGTGGTCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: GGEQVLRGGPWHFSLHRRDDISG*VDVVRM Trigger: CATCCTGACCACATCCACCCATCCTGAGATGTCATC...CCTTCTATGCAGAGAGAAATGCCAAGGCCCTCCTCTCAATACCTGCTCTCCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | CAGTTTCAGGGGTTAGTTCATTTACATCATGGTAGGGAGCATGGTGGTATGCCAAGGACACTCCAGGTCTaGAATGTGCCCCCAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QFQGLVHLHHGREHGGMPRTLQV*NVPPGW Trigger: CCAGCCTGGGGGCACATTCCAGACCTGGAGTGTCCT...TGGCATACCACCATGCTCCCTACCATGATGTAAATGAACTAACCCCTGAAACTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | GGTTCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTGTTGAGGTTCAGTTCTaGGGCCAGCACAGTGACCTG | + |
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Preference number: 4 (lower is better) Translates to: GSYSNDHSPHSCHLRLCCVEVQF*GQHSDL Trigger: CAGGTCACTGTGCTGGCCTCAGAACTGAACCTCAAC...ACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | GGTTCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTTGGTGCAAGTGTGGTTaGGGTTCAGTTCTGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GSYSNDHSPHSCHLRLCCWCKCG*GSVLRP Trigger: TGGCCTCAGAACTGAACCTCAACCACACTTGCACCA...ACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | TCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTAAATTTATGTGGGGCTTTGCACTCTaGGAGGAGGAACATGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SNDHSPHSCHLRLCCKFMWGFAL*EEEHVR Trigger: CCTGACATGTTCCTCCTCTCAGAGTGCAAAGCCCCA...CATAAATTTACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | TACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTTGCCTCTGAATCTACATCTCAGGATGGGTaGATGTGGTCAGGATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: YPCSSDTHFLQQGLASESTSQDG*MWSGCS Trigger: TGAACATCCTGACCACATCCACCCATCCTGAGATGT...AGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | TCCCTAGTGGCTTCTCCACTGTTTTCCTCAGATCTCATGTGGTTTGAGTTTATTTCAGGATGTTCACAGTaGGGTTGCTGGGTGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: SLVASPLFSSDLMWFEFISGCSQ*GCWVPW Trigger: CCATGGCACCCAGCAACCTCACTGTGAACATCCTGA...AATAAACTCAAACCACATGAGATCTGAGGAAAACAGTGGAGAAGCCACTAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR GCA 90 bp | TTCATGTTGAGGGAAAGCACTTTTCTCTGTAGTTGCAGGATTCTGCTGTCCTGGTTTCCTCTGGGGCTTTaGACTCTGAGAGGAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: FMLRESTFLCSCRILLSWFPLGL*TLRGGT Trigger: TGTTCCTCCTCTCAGAGTGCAAAGCCCCAGAGGAAA...CCAGGACAGCAGAATCCTGCAACTACAGAGAAAAGTGCTTTCCCTCAACATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR GCA 90 bp | TCCCTAGTGGCTTCTCCACTGTTTTCCTCAGATCTCATGTGGTTTGAGTTTATTAGTGAGGTTGCTGGGTaGCATGGCCCCTTCTATGTC | + |
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Preference number: 4 (lower is better) Translates to: SLVASPLFSSDLMWFEFISEVAG*HGPFYV Trigger: GACATAGAAGGGGCCATGGCACCCAGCAACCTCACT...AATAAACTCAAACCACATGAGATCTGAGGAAAACAGTGGAGAAGCCACTAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | TCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTAAATCTTTGGCTCCCAGCTaGTTTTCAGTGGCTGACTTC | + |
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Preference number: 4 (lower is better) Translates to: SYSNDHSPHSCHLRLCCKSLAPS*FSVADF Trigger: GAAGTCAGCCACTGAAAATCAGCTGGGAGCCAAAGA...TTTACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | TCTCTCTGCATAGAAGGTATCTTCTTAGTTGGCTTCATGTTGAGGGAAAGCACTACACAGGAGCCAAGATaGCATCTCAGGATGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: SLCIEGIFLVGFMLRESTTQEPR*HLRMGG Trigger: TCCACCCATCCTGAGATGTCATCTTGGCTCCTGTGT...AGTGCTTTCCCTCAACATGAAGCCAACTAAGAAGATACCTTCTATGCAGAGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | GGTTCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTGACTTCATTTTACTGTaGACACTCAGCCACATGAGG | + |
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Preference number: 4 (lower is better) Translates to: GSYSNDHSPHSCHLRLCCDFILL*TLSHMR Trigger: CCTCATGTGGCTGAGTGTCCACAGTAAAATGAAGTC...ACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR CAA 72 bp | CGTGCTCCAGTGACACACACTTCCTACAACAAGGACTaGCCTCTGAATCTTTCTGATCCTGTTAAAGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: RAPVTHTSYNKD*PLNLSDPVKEF Trigger: GAACTCTTTAACAGGATCAGAAAGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR TCA 90 bp | TCTTATTCAAATGACCACAGTCCCCATTCCTGTCACCTAAGGCTCTGCTGTAAAATTAAGCTTTGTCTTTaGGGCCTCATGTTCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: SYSNDHSPHSCHLRLCCKIKLCL*GLMFHH Trigger: GTGGTGGAACATGAGGCCTCAAAGACAAAGCTTAAT...TTTACAGCAGAGCCTTAGGTGACAGGAATGGGGACTGTGGTCATTTGAATAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | TCCCTAGTGGCTTCTCCACTGTTTTCCTCAGATCTCATGTGGTTTGAGTTTATTACTCTCTTAGAGGACTaGGAATCCCATGACTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLVASPLFSSDLMWFEFITLLED*ESHDSG Trigger: TCCTGAGTCATGGGATTCCCAGTCCTCTAAGAGAGT...AATAAACTCAAACCACATGAGATCTGAGGAAAACAGTGGAGAAGCCACTAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | TCCCTAGTGGCTTCTCCACTGTTTTCCTCAGATCTCATGTGGTTTGAGTTTATTCTCAGCCACATGAGGTaGATATTTTCGGGGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SLVASPLFSSDLMWFEFILSHMR*IFSGKK Trigger: CTTCTTCCCCGAAAATATCCACCTCATGTGGCTGAG...AATAAACTCAAACCACATGAGATCTGAGGAAAACAGTGGAGAAGCCACTAGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CCA 90 bp | TCTCTCTGCATAGAAGGTATCTTCTTAGTTGGCTTCATGTTGAGGGAAAGCACTTTTATGGTGCAAGTGTaGTTGAGGTTCAGTTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SLCIEGIFLVGFMLRESTFMVQV*LRFSSE Trigger: CTCAGAACTGAACCTCAACCACACTTGCACCATAAA...AGTGCTTTCCCTCAACATGAAGCCAACTAAGAAGATACCTTCTATGCAGAGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| 3UTR CAA 72 bp | CTCTGCATAGAAGGTATCTTCTTAGTTGGCTTCATGTaGAGGGAAAGCACTTTTCTCTGTAGTTGCAGGATT | + |
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Preference number: 4 (lower is better) Translates to: LCIEGIFLVGFM*RESTFLCSCRI Trigger: AATCCTGCAACTACAGAGAAAAGTGCTTTCCCTCAACATGAAGCCAACTAAGAAGATACCTTCTATGCAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CAA 90 bp | TACCCGTGCTCCAGTGACACACACTTCCTACAACAAGGACTTGCCTCTGAATCTATGTTCACAGTGAGGTaGCTGGGTGCCATGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: YPCSSDTHFLQQGLASESMFTVR*LGAMAP Trigger: AGGGGCCATGGCACCCAGCAACCTCACTGTGAACAT...AGATTCAGAGGCAAGTCCTTGTTGTAGGAAGTGTGTGTCACTGGAGCACGGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS CCA 90 bp | AAGAAGCCAGATACTTCACACAGGAGCCAAGATGACATCTCAGGATaGGTGGATGTGGTCAGGATGTTCACAGTGAGGTTGCTGGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: KKPDTSHRSQDDISG*VDVVRMFTVRLLGA Trigger: GGCACCCAGCAACCTCACTGTGAACATCCTGACCACATCCACCCATCCTGAGATGTCATCTTGGCTCCTGTGTGAAGTATCTGGCTTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS-3UTR CAA 90 bp | GGGAGTCTAGGTGGAGAGCAGGTATTGAGAGGAGGGCCTTGGCATTTCTCTCTGCCTTCTATGTCCTTTTaGGTGGTAATAGCTTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: GSLGGEQVLRGGPWHFSLPSMSF*VVIALV Trigger: CACCAAAGCTATTACCACCAAAAAGGACATAGAAGG...CAGAGAGAAATGCCAAGGCCCTCCTCTCAATACCTGCTCTCCACCTAGACTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS GCA 90 bp | CTTTTTGGTGGTAATAGCTTTGGTGGCTTCTGTGGAGTGATTCTTTaGTTGGAGAGTTGGAGTGACTCTCTTAGAGGACTGGGAATCCCA | + |
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Preference number: 5 (lower is better) Translates to: LFGGNSFGGFCGVIL*LESWSDSLRGLGIP Trigger: TGGGATTCCCAGTCCTCTAAGAGAGTCACTCCAACTCTCCAAGCAAAGAATCACTCCACAGAAGCCACCAAAGCTATTACCACCAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS TCA 90 bp | CCTTTTGGGTTTATTTATGGTGCAAGTGTGGTTGAGGTTCAGTTCTaGGGCCAGCACAGTGACCTGGAGGACCATTGTATAATTGCCATT | + |
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Preference number: 5 (lower is better) Translates to: PFGFIYGASVVEVQF*GQHSDLEDHCIIAI Trigger: AATGGCAATTATACAATGGTCCTCCAGGTCACTGTGCTGGCCTCAGAACTGAACCTCAACCACACTTGCACCATAAATAAACCCAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGTTGGCTTCATGTTGAGGGAAAGCACTTTTCTCTGTAGTTGCAGGATTTTTTCCTCTGGGGCTTaGCACTCTGAGAGGAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: FLVGFMLRESTFLCSCRIFSSGA*HSERRN Trigger: GTTCCTCCTCTCAGAGTGCAAAGCCCCAGAGGAAAA...AATCCTGCAACTACAGAGAAAAGTGCTTTCCCTCAACATGAAGCCAACTAAGAA 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGTTGGCTTCATGTTGAGGGAAAGCACTTTTCTCTGTAGTTGCAGGATTATGGTGCAAGTGTGGTaGAGGTTCAGTTCTGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: FLVGFMLRESTFLCSCRIMVQVW*RFSSEA Trigger: GGCCTCAGAACTGAACCTCAACCACACTTGCACCAT...AATCCTGCAACTACAGAGAAAAGTGCTTTCCCTCAACATGAAGCCAACTAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGTTGGCTTCATGTTGAGGGAAAGCACTTTTCTCTGTAGTTGCAGGATTCATGATACACGAGTGTaGGATGGTGTTGACTATGCC | + |
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Preference number: 5 (lower is better) Translates to: FLVGFMLRESTFLCSCRIHDTRV*DGVDYA Trigger: GGCATAGTCAACACCATCCAACACTCGTGTATCATG...AATCCTGCAACTACAGAGAAAAGTGCTTTCCCTCAACATGAAGCCAACTAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS TCA 90 bp | ATTGCCATTTCTCATTTCAGAGGGGAAGACATGTTCAACTATACTTaGCTTCTTTGGCTCCCAGCTGATTTTCAGTGGCTGACTTCCAAT | + |
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Preference number: 5 (lower is better) Translates to: IAISHFRGEDMFNYT*LLWLPADFQWLTSN Trigger: ATTGGAAGTCAGCCACTGAAAATCAGCTGGGAGCCAAAGAAGTCAAGTATAGTTGAACATGTCTTCCCCTCTGAAATGAGAAATGGCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS-3UTR CAA 90 bp | TTCTTAGTTGGCTTCATGTTGAGGGAAAGCACTTTTCTCTGTAGTTGCAGGATTCTAATTGCTAGGCTCTaGCTGGCATTAAGCTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: FLVGFMLRESTFLCSCRILIARL*LALSFV Trigger: GACAAAGCTTAATGCCAGCAAGAGCCTAGCAATTAG...AATCCTGCAACTACAGAGAAAAGTGCTTTCCCTCAACATGAAGCCAACTAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS CAA 72 bp | TCTTTCCTTTTGGGTTTATTTATGGTGCAAGTGTGGTaGAGGTTCAGTTCTGAGGCCAGCACAGTGACCTGG | + |
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Preference number: 6 (lower is better) Translates to: SFLLGLFMVQVW*RFSSEASTVTW Trigger: CCAGGTCACTGTGCTGGCCTCAGAACTGAACCTCAACCACACTTGCACCATAAATAAACCCAAAAGGAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS CAA 72 bp | AATAGCTTTGGTGGCTTCTGTGGAGTGATTCTTTGCTaGGAGAGTTGGAGTGACTCTCTTAGAGGACTGGGA | + |
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Preference number: 6 (lower is better) Translates to: NSFGGFCGVILC*ESWSDSLRGLG Trigger: TCCCAGTCCTCTAAGAGAGTCACTCCAACTCTCCAAGCAAAGAATCACTCCACAGAAGCCACCAAAGCTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS CAA 72 bp | CTTTGCTCATCCATGATACACGAGTGTTGGATGGTGTaGACTATGCCACTAATTGCTAGGCTCTTGCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LCSSMIHECWMV*TMPLIARLLLA Trigger: TGCCAGCAAGAGCCTAGCAATTAGTGGCATAGTCAACACCATCCAACACTCGTGTATCATGGATGAGCAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS TCA 72 bp | TTTATTTATGGTGCAAGTGTGGTTGAGGTTCAGTTCTaGGGCCAGCACAGTGACCTGGAGGACCATTGTATA | + |
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Preference number: 6 (lower is better) Translates to: FIYGASVVEVQF*GQHSDLEDHCI Trigger: TATACAATGGTCCTCCAGGTCACTGTGCTGGCCTCAGAACTGAACCTCAACCACACTTGCACCATAAATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS CAA 72 bp | TGGATGGTGTTGACTATGCCACTAATTGCTAGGCTCTaGCTGGCATTAAGCTTTGTCTTTGAGGCCTCATGT | + |
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Preference number: 6 (lower is better) Translates to: WMVLTMPLIARL*LALSFVFEASC Trigger: ACATGAGGCCTCAAAGACAAAGCTTAATGCCAGCAAGAGCCTAGCAATTAGTGGCATAGTCAACACCATCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194162.6 |
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| CDS CCA 72 bp | TTTGCTTGGAGAGTTGGAGTGACTCTCTTAGAGGACTaGGAATCCCATGACTCAGGAAACTTGAAAGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: FAWRVGVTLLED*ESHDSGNLKGF Trigger: AAAACCTTTCAAGTTTCCTGAGTCATGGGATTCCCAGTCCTCTAAGAGAGTCACTCCAACTCTCCAAGCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS TCA 72 bp | CTTGACTTCTTTGGCTCCCAGCTGATTTTCAGTGGCTaGCTTCCAATTACTAAACAGCCCAGGTTTATCTTT | + |
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Preference number: 6 (lower is better) Translates to: LDFFGSQLIFSG*LPITKQPRFIF Trigger: AAAGATAAACCTGGGCTGTTTAGTAATTGGAAGTCAGCCACTGAAAATCAGCTGGGAGCCAAAGAAGTCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS CCA 72 bp | TTTGCAGTGACAAAGTTTGTAGACTTCATTTTACTGTaGACACTCAGCCACATGAGGTGGATATTTTCGGGG | + |
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Preference number: 6 (lower is better) Translates to: FAVTKFVDFILL*TLSHMRWIFSG Trigger: CCCCGAAAATATCCACCTCATGTGGCTGAGTGTCCACAGTAAAATGAAGTCTACAAACTTTGTCACTGCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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| CDS TCA 72 bp | CATGTTCAACTATACTTGACTTCTTTGGCTCCCAGCTaGTTTTCAGTGGCTGACTTCCAATTACTAAACAGC | + |
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Preference number: 6 (lower is better) Translates to: HVQLYLTSLAPS*FSVADFQLLNS Trigger: GCTGTTTAGTAATTGGAAGTCAGCCACTGAAAATCAGCTGGGAGCCAAAGAAGTCAAGTATAGTTGAACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000192250.2 ENSMUST00000194162.6 |
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