Pregenerated sensors for IGFBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020429Ensembl transcript IDs: ENSMUST00000020704.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTTTCCCAGCAAATGTGCATCAGACACAGATCTGTGTGAGACGATaGGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTAACCCAC | + |
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Preference number: 1 (lower is better) Translates to: TFPANVHQTQICVRR*GNLRVWANLPPLTH Trigger: GTGGGTTAGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACACAGATCTGTGTCTGATGCACATTTGCTGGGAAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR-3UTR CCA 90 bp | CATCGGAACTTTCCCAGCAAATGTGCATCAGACACAGATCTGTGTGAGACGATGGGAAATCTCCGAGTGTaGGCCAACCTCCCTCCCCTA | + |
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Preference number: 2 (lower is better) Translates to: HRNFPSKCASDTDLCETMGNLRV*ANLPPL Trigger: TAGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCC...CATCGTCTCACACAGATCTGTGTCTGATGCACATTTGCTGGGAAAGTTCCGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR-3UTR GCA 90 bp | CATCGGAACTTTCCCAGCAAATGTGCATCAGACACAGATCTGTGTGAGACGATGCTTCCGGCCTCAGACTaGCTTGTTCTAAGCAGCATC | + |
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Preference number: 2 (lower is better) Translates to: HRNFPSKCASDTDLCETMLPASD*LVLSSI Trigger: GATGCTGCTTAGAACAAGGCAGTCTGAGGCCGGAAG...CATCGTCTCACACAGATCTGTGTCTGATGCACATTTGCTGGGAAAGTTCCGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR-3UTR CCA 90 bp | GATCTGTGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTGTATCAAGCAGTATGTaGAGTATAAAAACTAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: DLCETMRKSPSVGQPPSPVSSSM*SIKTSS Trigger: GGAACTAGTTTTTATACTCCACATACTGCTTGATAC...AGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACACAGATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR CAA 90 bp | TGCCTTGTTCTAAGCAGCATCACTCTGCCCTTTCAAAGCAGAACTTaGCAAGAGCTGAGATATAGTATTTACATGTACAGAGATGAGAAG | + |
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Preference number: 2 (lower is better) Translates to: CLVLSSITLPFQSRT*QELRYSIYMYRDEK Trigger: CTTCTCATCTCTGTACATGTAAATACTATATCTCAGCTCTTGCAAAGTTCTGCTTTGAAAGGGCAGAGTGATGCTGCTTAGAACAAGGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR TCA 72 bp | GCAAATGTGCATCAGACACAGATCTGTGTGAGACGATaGGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: ANVHQTQICVRR*GNLRVWANLPP Trigger: GGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACACAGATCTGTGTCTGATGCACATTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR-3UTR CAA 90 bp | TGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTAACCCATTTCAAAGCAGAACTTaGCAAGAGCTGAGATATAGT | + |
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Preference number: 3 (lower is better) Translates to: CETMRKSPSVGQPPSPNPFQSRT*QELRYS Trigger: ACTATATCTCAGCTCTTGCAAAGTTCTGCTTTGAAA...TGGGTTAGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR CCA 72 bp | AACAATGTATGGGACGCAGCTTTCCACGTTCAGCTTTaGTTACACAATCAGCATCGGAACTTTCCCAGCAAA | + |
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Preference number: 3 (lower is better) Translates to: NNVWDAAFHVQL*LHNQHRNFPSK Trigger: TTTGCTGGGAAAGTTCCGATGCTGATTGTGTAACCAAAGCTGAACGTGGAAAGCTGCGTCCCATACATTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR TCA 72 bp | TCACTCTGCCCTTTCAAAGCAGAACTTTGCAAGAGCTaGGATATAGTATTTACATGTACAGAGATGAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: SLCPFKAELCKS*DIVFTCTEMRR Trigger: TCTTCTCATCTCTGTACATGTAAATACTATATCTCAGCTCTTGCAAAGTTCTGCTTTGAAAGGGCAGAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGGGCCAACCTCCCTCCCCTAACCCACTGAAAGCTTCCGGCCTCAGACTGGCTCCTTCCATTTCTTaGGGTCGGCGATCTCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SVGQPPSPNPLKASGLRLAPSIS*GRRSPG Trigger: CCCGGGAGATCGCCGACCTCAAGAAATGGAAGGAGC...CAGTCTGAGGCCGGAAGCTTTCAGTGGGTTAGGGGAGGGAGGTTGGCCCACACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR GCA 90 bp | AGTGTGGGCCAACCTCCCTCCCCTAACCCACTGAAAGCTTCCGGCCTCAGACTGCCAGCCTCTCAGCAGTaGAGGGAGCACAGTGCCATG | + |
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Preference number: 4 (lower is better) Translates to: SVGQPPSPNPLKASGLRLPASQQ*REHSAM Trigger: CATGGCACTGTGCTCCCTGCACTGCTGAGAGGCTGG...CAGTCTGAGGCCGGAAGCTTTCAGTGGGTTAGGGGAGGGAGGTTGGCCCACACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR GCA 90 bp | TGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTAACCCACCACGGGTGAGGGCATaGAGGGGACGAGGCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: CETMRKSPSVGQPPSPNPPRVRA*RGRGSP Trigger: AGGAGAGCCTCGTCCCCTGCATGCCCTCACCCGTGG...TGGGTTAGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CCA 90 bp | AGTGTGGGCCAACCTCCCTCCCCTAACCCACTGAAAGCTTCCGGCCTCAGACTGGCGGCCACGCCAATCTaGAAGGACAGGAGAATCAGG | + |
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Preference number: 4 (lower is better) Translates to: SVGQPPSPNPLKASGLRLAATPI*KDRRIR Trigger: CCTGATTCTCCTGTCCTTCCAGATTGGCGTGGCCGC...CAGTCTGAGGCCGGAAGCTTTCAGTGGGTTAGGGGAGGGAGGTTGGCCCACACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR GCA 90 bp | TGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTAACCCAAAGCTGTCCAGCAGCTaGTCCTCTGTCATCTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: CETMRKSPSVGQPPSPNPKLSSS*SSVISG Trigger: CCCAGAGATGACAGAGGAGCAGCTGCTGGACAGCTT...TGGGTTAGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CCA 90 bp | CATCGGAACTTTCCCAGCAAATGTGCATCAGACACAGATCTGTGTGAGACGATGCGAAGCGGGCACGGGTaGACAGAGCCCCAGCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HRNFPSKCASDTDLCETMRSGHG*TEPQPL Trigger: GAGAGGCTGGGGCTCTGTCCACCCGTGCCCGCTTCG...CATCGTCTCACACAGATCTGTGTCTGATGCACATTTGCTGGGAAAGTTCCGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR GCA 90 bp | GATCTGTGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTGCCTTTGCCTCTTCATaGTGGGAGCTGAACAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: DLCETMRKSPSVGQPPSPAFASS*WELNKV Trigger: CACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGC...AGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACACAGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR GCA 90 bp | GATCTGTGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTGTAGATTTCATCTCCTaGTTTCTGTTGGGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DLCETMRKSPSVGQPPSPVDFIS*FLLGCS Trigger: GCTGCAGCCCAACAGAAAGCAGGAGATGAAATCTAC...AGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACACAGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CCA 90 bp | GATCTGTGTGAGACGATGAGGAAATCTCCGAGTGTGGGCCAACCTCCCTCCCCTTCTCCTGCTTTCTGTTaGGCTGCAGCTAATCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: DLCETMRKSPSVGQPPSPSPAFC*AAANLS Trigger: AGAGAGATTAGCTGCAGCCCAACAGAAAGCAGGAGA...AGGGGAGGGAGGTTGGCCCACACTCGGAGATTTCCTCATCGTCTCACACAGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CCA 90 bp | CTTCCGGCCTCAGACTGCCTTGTTCTAAGCAGCATCACTCTGCCCTTTCAAAGCTTTCTTTCCACTCCATaGGTAGACACACCAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LPASDCLVLSSITLPFQSFLSTP*VDTPAE Trigger: CTCTGCTGGTGTGTCTACCCATGGAGTGGAAAGAAA...GCTTTGAAAGGGCAGAGTGATGCTGCTTAGAACAAGGCAGTCTGAGGCCGGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR TCA 90 bp | TTGCAAGAGCTGAGATATAGTATTTACATGTACAGAGATGAGAAGAGCTTCATGTTCCACAGGATGGGCTaGTCCTCGCGGGATGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LQELRYSIYMYRDEKSFMFHRMG*SSRDGA Trigger: GGCCCCATCCCGCGAGGATCAGCCCATCCTGTGGAA...CATGAAGCTCTTCTCATCTCTGTACATGTAAATACTATATCTCAGCTCTTGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CCA 90 bp | TTGCAAGAGCTGAGATATAGTATTTACATGTACAGAGATGAGAAGAGCTTCATGGATGGGGCCATCAGGTaGAAGCTGTCCAGCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: LQELRYSIYMYRDEKSFMDGAIR*KLSSSC Trigger: GCAGCTGCTGGACAGCTTCCACCTGATGGCCCCATC...CATGAAGCTCTTCTCATCTCTGTACATGTAAATACTATATCTCAGCTCTTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CCA 90 bp | ATCACTCTGCCCTTTCAAAGCAGAACTTTGCAAGAGCTGAGATATAGTATTTACCTCCTCTGTCATCTCTaGGCTCTCAGAAAGCTCATC | + |
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Preference number: 4 (lower is better) Translates to: ITLPFQSRTLQELRYSIYLLCHL*ALRKLI Trigger: GATGAGCTTTCTGAGAGCCCAGAGATGACAGAGGAG...GTAAATACTATATCTCAGCTCTTGCAAAGTTCTGCTTTGAAAGGGCAGAGTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| 3UTR CAA 72 bp | CTAAGCAGCATCACTCTGCCCTTTCAAAGCAGAACTTaGCAAGAGCTGAGATATAGTATTTACATGTACAGA | + |
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Preference number: 4 (lower is better) Translates to: LSSITLPFQSRT*QELRYSIYMYR Trigger: TCTGTACATGTAAATACTATATCTCAGCTCTTGCAAAGTTCTGCTTTGAAAGGGCAGAGTGATGCTGCTTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR GCA 90 bp | AACCAGCTTCATGTATCAAGCAGTATGTGGAGTATAAAAACTAGTTCCTGGATAATGTCTCACACTGTTTaGTGTGATAAAATCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: NQLHVSSSMWSIKTSSWIMSHTV*CDKIHS Trigger: AGAATGGATTTTATCACAGCAAACAGTGTGAGACAT...TATCCAGGAACTAGTTTTTATACTCCACATACTGCTTGATACATGAAGCTGGTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 90 bp | GGCTCCCTGACCACGGGTGAGGGCATGCAGGGGACGAGGCTCTCCTaGCAACGCACGGCAGCTGAGTCCCTGGGCGCAGCGAGCAGTGGC | + |
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Preference number: 5 (lower is better) Translates to: GSLTTGEGMQGTRLS*QRTAAESLGAASSG Trigger: GCCACTGCTCGCTGCGCCCAGGGACTCAGCTGCCGTGCGTTGCCAGGAGAGCCTCGTCCCCTGCATGCCCTCACCCGTGGTCAGGGAGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 90 bp | ACAGCCTGCAGGCCGAGAAATCTCGGGGCACGAAGCGGGCACGGGTaGACAGAGCCCCAGCCTCTCAGCAGTGCAGGGAGCACAGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: TACRPRNLGARSGHG*TEPQPLSSAGSTVP Trigger: TGGCACTGTGCTCCCTGCACTGCTGAGAGGCTGGGGCTCTGTCCACCCGTGCCCGCTTCGTGCCCCGAGATTTCTCGGCCTGCAGGCTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS TCA 90 bp | AAGGTGCTCGTGGCGGGTGCAGCAGGTTCTGGTACACAGGCTCCCTaGCCACGGGTGAGGGCATGCAGGGGACGAGGCTCTCCTGGCAAC | + |
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Preference number: 5 (lower is better) Translates to: KVLVAGAAGSGTQAP*PRVRACRGRGSPGN Trigger: GTTGCCAGGAGAGCCTCGTCCCCTGCATGCCCTCACCCGTGGTCAGGGAGCCTGTGTACCAGAACCTGCTGCACCCGCCACGAGCACCTT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS TCA 90 bp | CATCCGCGGAGACCACAGCAGCCTTTGCCTCTTCATGCTGGGAGCTaGACAAGGTGCTCGTGGCGGGTGCAGCAGGTTCTGGTACACAGG | + |
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Preference number: 5 (lower is better) Translates to: HPRRPQQPLPLHAGS*TRCSWRVQQVLVHR Trigger: CCTGTGTACCAGAACCTGCTGCACCCGCCACGAGCACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCTCCGCGGATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 90 bp | GAAAGCTCATCCGCGGAGACCACAGCAGCCTTTGCCTCTTCATGCTaGGAGCTGAACAAGGTGCTCGTGGCGGGTGCAGCAGGTTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: ESSSAETTAAFASSC*ELNKVLVAGAAGSG Trigger: ACCAGAACCTGCTGCACCCGCCACGAGCACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCTCCGCGGATGAGCTTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 90 bp | GGCCATCAGGTGGAAGCTGTCCAGCAGCTGCTCCTCTGTCATCTCTaGGCTCTCAGAAAGCTCATCCGCGGAGACCACAGCAGCCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: GHQVEAVQQLLLCHL*ALRKLIRGDHSSLC Trigger: GCAAAGGCTGCTGTGGTCTCCGCGGATGAGCTTTCTGAGAGCCCAGAGATGACAGAGGAGCAGCTGCTGGACAGCTTCCACCTGATGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 90 bp | ATAGGTGCTGATGGCGTTCCACAGGATGGGCTGATCCTCGCGGGATaGGGCCATCAGGTGGAAGCTGTCCAGCAGCTGCTCCTCTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: IGADGVPQDGLILAG*GHQVEAVQQLLLCH Trigger: ATGACAGAGGAGCAGCTGCTGGACAGCTTCCACCTGATGGCCCCATCCCGCGAGGATCAGCCCATCCTGTGGAACGCCATCAGCACCTAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS GCA 90 bp | TCAGAAAGCTCATCCGCGGAGACCACAGCAGCCTTTGCCTCTTCATaGTGGGAGCTGAACAAGGTGCTCGTGGCGGGTGCAGCAGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SESSSAETTAAFASS*WELNKVLVAGAAGS Trigger: AGAACCTGCTGCACCCGCCACGAGCACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCTCCGCGGATGAGCTTTCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 90 bp | GTCCCCTCTAGTCTCCAGAGACCCAGGGATTTTCTTTCCACTCCATaGGTAGACACACCAGCAGAGTCCAGCTTCTCCATCCAGGGATGT | + |
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Preference number: 5 (lower is better) Translates to: VPSSLQRPRDFLSTP*VDTPAESSFSIQGC Trigger: ACATCCCTGGATGGAGAAGCTGGACTCTGCTGGTGTGTCTACCCATGGAGTGGAAAGAAAATCCCTGGGTCTCTGGAGACTAGAGGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CAA 90 bp | CTTCCGGCCTCAGACTGCCTTGTTCTAAGCAGCATCACTCTGCCCTTTCAAAGCTTTATAGAGTTCTCGTaGGCAGGGCTCCTTCCATTT | + |
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Preference number: 5 (lower is better) Translates to: LPASDCLVLSSITLPFQSFIEFS*AGLLPF Trigger: AAATGGAAGGAGCCCTGCCAACGAGAACTCTATAAA...GCTTTGAAAGGGCAGAGTGATGCTGCTTAGAACAAGGCAGTCTGAGGCCGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS-3UTR CAA 90 bp | TTGCAAGAGCTGAGATATAGTATTTACATGTACAGAGATGAGAAGAGCTTCATGAGACCACAGCAGCCTTaGCCTCTTCATGCTGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: LQELRYSIYMYRDEKSFMRPQQP*PLHAGS Trigger: GCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCT...CATGAAGCTCTTCTCATCTCTGTACATGTAAATACTATATCTCAGCTCTTGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS TCA 72 bp | GCAGGGGACGAGGCTCTCCTGGCAACGCACGGCAGCTaGGTCCCTGGGCGCAGCGAGCAGTGGCCACACCGC | + |
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Preference number: 6 (lower is better) Translates to: AGDEALLATHGS*VPGRSEQWPHR Trigger: GCGGTGTGGCCACTGCTCGCTGCGCCCAGGGACTCAGCTGCCGTGCGTTGCCAGGAGAGCCTCGTCCCCTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | CGAGGCTCTCCTGGCAACGCACGGCAGCTGAGTCCCTaGGCGCAGCGAGCAGTGGCCACACCGCAGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: RGSPGNARQLSP*AQRAVATPQAA Trigger: TGCTGCCTGCGGTGTGGCCACTGCTCGCTGCGCCCAGGGACTCAGCTGCCGTGCGTTGCCAGGAGAGCCTCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | ACCACGGGTGAGGGCATGCAGGGGACGAGGCTCTCCTaGCAACGCACGGCAGCTGAGTCCCTGGGCGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: TTGEGMQGTRLS*QRTAAESLGAA Trigger: CGCTGCGCCCAGGGACTCAGCTGCCGTGCGTTGCCAGGAGAGCCTCGTCCCCTGCATGCCCTCACCCGTGGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | AGGCCGAGAAATCTCGGGGCACGAAGCGGGCACGGGTaGACAGAGCCCCAGCCTCTCAGCAGTGCAGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RPRNLGARSGHG*TEPQPLSSAGS Trigger: GCTCCCTGCACTGCTGAGAGGCTGGGGCTCTGTCCACCCGTGCCCGCTTCGTGCCCCGAGATTTCTCGGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS TCA 72 bp | GTGGCGGGTGCAGCAGGTTCTGGTACACAGGCTCCCTaGCCACGGGTGAGGGCATGCAGGGGACGAGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: VAGAAGSGTQAP*PRVRACRGRGS Trigger: AGAGCCTCGTCCCCTGCATGCCCTCACCCGTGGTCAGGGAGCCTGTGTACCAGAACCTGCTGCACCCGCCAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS GCA 72 bp | CATCGGCAAGGCACATGTCGGGCAGCAGCCACAGCCTaGAGGCCGAGAAATCTCGGGGCACGAAGCGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: HRQGTCRAAATA*RPRNLGARSGH Trigger: GTGCCCGCTTCGTGCCCCGAGATTTCTCGGCCTGCAGGCTGTGGCTGCTGCCCGACATGTGCCTTGCCGATG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | AGCCTCTCAGCAGTGCAGGGAGCACAGTGCCATGGCTaGGGGGCTCCAGCGGCCACGCCAATCTGGAAGGAC | + |
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Preference number: 6 (lower is better) Translates to: SLSAVQGAQCHG*GAPAATPIWKD Trigger: GTCCTTCCAGATTGGCGTGGCCGCTGGAGCCCCCCAGCCATGGCACTGTGCTCCCTGCACTGCTGAGAGGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | GCTGAACAAGGTGCTCGTGGCGGGTGCAGCAGGTTCTaGTACACAGGCTCCCTGACCACGGGTGAGGGCATG | + |
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Preference number: 6 (lower is better) Translates to: AEQGARGGCSRF*YTGSLTTGEGM Trigger: CATGCCCTCACCCGTGGTCAGGGAGCCTGTGTACCAGAACCTGCTGCACCCGCCACGAGCACCTTGTTCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | GATGGCGTTCCACAGGATGGGCTGATCCTCGCGGGATaGGGCCATCAGGTGGAAGCTGTCCAGCAGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: DGVPQDGLILAG*GHQVEAVQQLL Trigger: GAGCAGCTGCTGGACAGCTTCCACCTGATGGCCCCATCCCGCGAGGATCAGCCCATCCTGTGGAACGCCATC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | TCCGCGGAGACCACAGCAGCCTTTGCCTCTTCATGCTaGGAGCTGAACAAGGTGCTCGTGGCGGGTGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SAETTAAFASSC*ELNKVLVAGAA Trigger: TGCTGCACCCGCCACGAGCACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCTCCGCGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS GCA 72 bp | TCATCCGCGGAGACCACAGCAGCCTTTGCCTCTTCATaGTGGGAGCTGAACAAGGTGCTCGTGGCGGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SSAETTAAFASS*WELNKVLVAGA Trigger: TGCACCCGCCACGAGCACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCTCCGCGGATGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS TCA 72 bp | AGACCACAGCAGCCTTTGCCTCTTCATGCTGGGAGCTaGACAAGGTGCTCGTGGCGGGTGCAGCAGGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: RPQQPLPLHAGS*TRCSWRVQQVL Trigger: CAGAACCTGCTGCACCCGCCACGAGCACCTTGTTCAGCTCCCAGCATGAAGAGGCAAAGGCTGCTGTGGTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS TCA 72 bp | TATAGAGTTCTCGTTGGCAGGGCTCCTTCCATTTCTTaGGGTCGGCGATCTCCCGGGCCCGCATGCTGCTAT | + |
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Preference number: 6 (lower is better) Translates to: YRVLVGRAPSIS*GRRSPGPACCY Trigger: ATAGCAGCATGCGGGCCCGGGAGATCGCCGACCTCAAGAAATGGAAGGAGCCCTGCCAACGAGAACTCTATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CCA 72 bp | AGTCTCCAGAGACCCAGGGATTTTCTTTCCACTCCATaGGTAGACACACCAGCAGAGTCCAGCTTCTCCATC | + |
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Preference number: 6 (lower is better) Translates to: SLQRPRDFLSTP*VDTPAESSFSI Trigger: GATGGAGAAGCTGGACTCTGCTGGTGTGTCTACCCATGGAGTGGAAAGAAAATCCCTGGGTCTCTGGAGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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| CDS CAA 90 bp | ATGTCTCACACTGTTTGCTGTGATAAAATCCATTCTTGTTGCAGTTaGGCAGATAAAATTTGTAGATTTCATCTCCTGCTTTCTGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: MSHTVCCDKIHSCCS*ADKICRFHLLLSVG Trigger: CCCAACAGAAAGCAGGAGATGAAATCTACAAATTTTATCTGCCAAACTGCAACAAGAATGGATTTTATCACAGCAAACAGTGTGAGACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020704.8 |
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