Pregenerated sensors for IGBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031221Ensembl transcript IDs: ENSMUST00000033570.6
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATGACAGGGATTTCCAGATACTCAAAGAGACCCACAGCTGAATCCTGGGGCTCCCTTGGTGTGAAGGTGTaGACCACGCTGTCCTTTGGC | + |
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Preference number: 2 (lower is better) Translates to: MTGISRYSKRPTAESWGSLGVKV*TTLSFG Trigger: GCCAAAGGACAGCGTGGTGCACACCTTCACACCAAG...GGAGCCCCAGGATTCAGCTGTGGGTCTCTTTGAGTATCTGGAAATCCCTGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| 3UTR-3UTR GCA 90 bp | GGTCATTACCTAGGGTACAAGCAATTATTTGACACTATCAAATGCAAAGCAAGACACGGCTGCCCTCACTaGACCCTCCTGAAGTTGTCC | + |
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Preference number: 2 (lower is better) Translates to: GHYLGYKQLFDTIKCKARHGCPH*TLLKLS Trigger: GGACAACTTCAGGAGGGTGCAGTGAGGGCAGCCGTG...TCTTGCTTTGCATTTGATAGTGTCAAATAATTGCTTGTACCCTAGGTAATGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| 3UTR-3UTR GCA 90 bp | ATGACAGGGATTTCCAGATACTCAAAGAGACCCACAGCTGAATCCTGGGGCTCCTTTGACACTATCAAATaGAAAGCAAGACTCCACACG | + |
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Preference number: 2 (lower is better) Translates to: MTGISRYSKRPTAESWGSFDTIK*KARLHT Trigger: CGTGTGGAGTCTTGCTTTGCATTTGATAGTGTCAAA...GGAGCCCCAGGATTCAGCTGTGGGTCTCTTTGAGTATCTGGAAATCCCTGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| 3UTR TCA 72 bp | TGCCCTCACTGCACCCTCCTGAAGTTGTCCTTGGTGTaGAGGTGTGCACCACGCTGTCCTTTGGCCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: CPHCTLLKLSLV*RCAPRCPLAFW Trigger: CCAGAAGGCCAAAGGACAGCGTGGTGCACACCTTCACACCAAGGACAACTTCAGGAGGGTGCAGTGAGGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| 3UTR TCA 72 bp | AAATGCTGGGCAATTCTTGCTCACAATGACAGCAGATaGCAGGGATTTCCAGATACTCAAAGAGACCCACAG | + |
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Preference number: 3 (lower is better) Translates to: KCWAILAHNDSR*QGFPDTQRDPQ Trigger: CTGTGGGTCTCTTTGAGTATCTGGAAATCCCTGTCATCTGCTGTCATTGTGAGCAAGAATTGCCCAGCATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| 3UTR GCA 72 bp | TACCTAGGGTACAAGCAATTATTTGACACTATCAAATaGAAAGCAAGACTCCACACGGCTGCCCTCACTGCA | + |
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Preference number: 3 (lower is better) Translates to: YLGYKQLFDTIK*KARLHTAALTA Trigger: TGCAGTGAGGGCAGCCGTGTGGAGTCTTGCTTTGCATTTGATAGTGTCAAATAATTGCTTGTACCCTAGGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR TCA 90 bp | ATGACAGGGATTTCCAGATACTCAAAGAGACCCACAGCTGAATCCTGGGGCTCCAGTATTATTTTCAGCTaGGTTAGTCTTGGTTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: MTGISRYSKRPTAESWGSSIIFS*VSLGLG Trigger: CCCCAAACCAAGACTAACTCAGCTGAAAATAATACT...GGAGCCCCAGGATTCAGCTGTGGGTCTCTTTGAGTATCTGGAAATCCCTGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR TCA 90 bp | ACTGGTCATTACCTAGGGTACAAGCAATTATTTGACACTATCAAATGCAAAGCATCTGGAAGAGATGAGTaGCAAGCTGTTTCCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: TGHYLGYKQLFDTIKCKASGRDE*QAVSSL Trigger: AAGAGAGGAAACAGCTTGTCACTCATCTCTTCCAGA...TGCTTTGCATTTGATAGTGTCAAATAATTGCTTGTACCCTAGGTAATGACCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR CCA 90 bp | ACTGGTCATTACCTAGGGTACAAGCAATTATTTGACACTATCAAATGCAAAGCAAGCTGTTTCCTCTCTTaGAGAGTCTTTTTCTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: TGHYLGYKQLFDTIKCKASCFLS*RVFFFQ Trigger: CTGAAAGAAAAAGACTCTCCAAGAGAGGAAACAGCT...TGCTTTGCATTTGATAGTGTCAAATAATTGCTTGTACCCTAGGTAATGACCAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR CAA 90 bp | AGTTGTCCTTGGTGTGAAGGTGTGCACCACGCTGTCCTTTGGCCTTCTGGCATGAGCCGGTGGGTTCAGTaGCTACTTCCACGTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SCPWCEGVHHAVLWPSGMSRWVQ*LLPRPP Trigger: TGGAGGACGTGGAAGTAGCAACTGAACCCACCGGCT...CATGCCAGAAGGCCAAAGGACAGCGTGGTGCACACCTTCACACCAAGGACAACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR CAA 90 bp | AGTTGTCCTTGGTGTGAAGGTGTGCACCACGCTGTCCTTTGGCCTTCTGGCATGAGGAGTTCTAGTCCTTaGGACACCTTATCCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: SCPWCEGVHHAVLWPSGMRSSSP*DTLSWI Trigger: AATCCAGGATAAGGTGTCCAAAGGACTAGAACTCCT...CATGCCAGAAGGCCAAAGGACAGCGTGGTGCACACCTTCACACCAAGGACAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR CAA 90 bp | ATGACAGGGATTTCCAGATACTCAAAGAGACCCACAGCTGAATCCTGGGGCTCCTCCTCCAGAAGTTTTTaGCTTGTTTCAAAGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: MTGISRYSKRPTAESWGSSSRSF*LVSKSS Trigger: GGAGCTCTTTGAAACAAGCAAAAAACTTCTGGAGGA...GGAGCCCCAGGATTCAGCTGTGGGTCTCTTTGAGTATCTGGAAATCCCTGTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR CAA 90 bp | ACTGGTCATTACCTAGGGTACAAGCAATTATTTGACACTATCAAATGCAAAGCACTCATCCTTTTGCTCTaGATCTTCCTGCTGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: TGHYLGYKQLFDTIKCKALILLL*IFLLLS Trigger: GCTCAGCAGCAGGAAGATCAAGAGCAAAAGGATGAG...TGCTTTGCATTTGATAGTGTCAAATAATTGCTTGTACCCTAGGTAATGACCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS-3UTR CAA 90 bp | ACTGGTCATTACCTAGGGTACAAGCAATTATTTGACACTATCAAATGCAAAGCAAAGCTGTTTCCTCTCTaGGAGAGTCTTTTTCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: TGHYLGYKQLFDTIKCKAKLFPL*ESLFLS Trigger: TGAAAGAAAAAGACTCTCCAAGAGAGGAAACAGCTT...TGCTTTGCATTTGATAGTGTCAAATAATTGCTTGTACCCTAGGTAATGACCAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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| CDS CAA 72 bp | CAAGGAGTTCTAGTCCTTTGGACACCTTATCCTGGATaGTTCGGGAGCCGGTGGGTTCAGTTGCTACTTCCA | + |
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Preference number: 6 (lower is better) Translates to: QGVLVLWTPYPG*FGSRWVQLLLP Trigger: TGGAAGTAGCAACTGAACCCACCGGCTCCCGAACAATCCAGGATAAGGTGTCCAAAGGACTAGAACTCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033570.6 |
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