Pregenerated sensors for IFT74 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028576Ensembl transcript IDs: ENSMUST00000030311.11, ENSMUST00000107104.3
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTaGGGTCTAACTCTTCAAGGGGAAGCTAGTTTACTT | + |
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Preference number: 3 (lower is better) Translates to: FGEITKPGHSRS*GLTLQGEASLL Trigger: AAGTAAACTAGCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | CTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTGGTCTTGCTGTTGTTaGTGGCATTGCAGTTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LLRGDHKARAFKKLGSNSWSCCC*WHCSCH Trigger: GTGGCAACTGCAATGCCACCAACAACAGCAAGACCA...AGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | CTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTCCACTCAAACCTTGTTaGGTCACAGGACGATCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LLRGDHKARAFKKLGSNSPLKPC*VTGRSA Trigger: TGCTGATCGTCCTGTGACCCAACAAGGTTTGAGTGG...AGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | GGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGTCAGCTCTTGGTTGGTaGTGGAGGATATCTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GEITKPGHSRSWGLTLQGSALGW*WRISAS Trigger: TGAAGCAGATATCCTCCATCACCAACCAAGAGCTGA...CCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | CAAGCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGAAGCTGAGGTCATCCTaGATCATCTTCAGCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: QAISPSGRSQSQGIQEAGKLRSS*IIFSSW Trigger: CCAAGAGCTGAAGATGATGCAGGATGACCTCAGCTT...CCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | ACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGCTAGTACCACCACGAGAACCTaGTCTTGCTGTTGTTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TKPGHSRSWGLTLQGEASTTTRT*SCCCWW Trigger: CCACCAACAACAGCAAGACCAGGTTCTCGTGGTGGT...ACTAGCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | GAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAAATAGGGCGAGGGGCTaGAGATTTGTGATTACTGGC | + |
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Preference number: 4 (lower is better) Translates to: EITKPGHSRSWGLTLQGENRARG*RFVITG Trigger: GCCAGTAATCACAAATCTTCAGCCCCTCGCCCTATT...TTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | AGCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTTTTTGCTCCAGGTGCTaGCACTTCCTCTCCAAATTT | + |
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Preference number: 4 (lower is better) Translates to: SYLSFGEITKPGHSRSWGFCSRC*HFLSKF Trigger: AAATTTGGAGAGGAAGTGGCAGCACCTGGAGCAAAA...ACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | ACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGCTAGTCTCCCTTTCCTCCATTaGCGATCCCATGCTTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: TKPGHSRSWGLTLQGEASLPFLH*RSHAFV Trigger: GACAAAAGCATGGGATCGCCAATGGAGGAAAGGGAG...ACTAGCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | CTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTCTTCTGCATCTCAGTTaGTTTAAAGCTGAGGTCATC | + |
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Preference number: 4 (lower is better) Translates to: LSLLRGDHKARAFKKLGSLLHLS*FKAEVI Trigger: GATGACCTCAGCTTTAAATCAACTGAGATGCAGAAG...AGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | GCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCACTGTCTCTCCATGCTaGCTATTTCCTGATTATCTT | + |
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Preference number: 4 (lower is better) Translates to: AISPSGRSQSQGIQEAGVTVSPC*LFPDYL Trigger: AAGATAATCAGGAAATAGCCAGCATGGAGAGACAGT...GACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | AGCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTATCATCTTCAGCTCTTaGTTGGTGATGGAGGATATC | + |
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Preference number: 4 (lower is better) Translates to: SYLSFGEITKPGHSRSWGIIFSS*LVMEDI Trigger: GATATCCTCCATCACCAACCAAGAGCTGAAGATGAT...ACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | CGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGCATTTCTGTGAGTTaGCAATACTGTTCTTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: RGDHKARAFKKLGSNSSRGISVS*QYCSFL Trigger: CAAGAAAGAACAGTATTGTCAACTCACAGAAATGCC...CCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | CTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTGATAATGCCATCTGCTaGTTGCTTTTCTTGTTCAAC | + |
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Preference number: 4 (lower is better) Translates to: LSLLRGDHKARAFKKLGSDNAIC*LLFLFN Trigger: GTTGAACAAGAAAAGCAAGCAGCAGATGGCATTATC...AGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | CGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGCCTCTTGTTTTACTTaGGAGTGTGCTATTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: RGDHKARAFKKLGSNSSRASCFT*ECAISV Trigger: AACTGAAATAGCACACTCCCAAGTAAAACAAGAGGC...CCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | ACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGCTAGTTCTTCTGCAATCATTTaGTCTCGATGGGACTCTAAC | + |
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Preference number: 4 (lower is better) Translates to: TKPGHSRSWGLTLQGEASSSAII*SRWDSN Trigger: GTTAGAGTCCCATCGAGATCAAATGATTGCAGAAGA...ACTAGCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | CGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGTTTGATAATGCCATCTaGTGCTTGCTTTTCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: RGDHKARAFKKLGSNSSRFDNAI*CLLFLF Trigger: GAACAAGAAAAGCAAGCAGCAGATGGCATTATCAAA...CCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTTATCTTCTTTAACCTaGTTAAGCAATCTCTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: AISPSGRSQSQGIQEAGVLSSLT*LSNLSL Trigger: AAGGGAGAGATTGCTTAAGCAGGTTAAAGAAGATAA...GACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | AGCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTCTTGACTCTTGGTTaGTATGAACTCTTTCATTAC | + |
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Preference number: 4 (lower is better) Translates to: SYLSFGEITKPGHSRSWGLLTLG*YELFHY Trigger: GTAATGAAAGAGTTCATAGCAACCAAGAGTCAAGAG...ACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCATCTTGCTGTTGTTGGTaGCATTGCAGTTGCCACTCG | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSSCCCW*HCSCHS Trigger: CGAGTGGCAACTGCAATGCCACCAACAACAGCAAGA...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCATCTGGGGACCTTTCATaGCAGTCTTCATTCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSSGDLS*QSSFHS Trigger: TGAGTGGAATGAAGACTGGCATGAAAGGTCCCCAGA...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGTGATGGAGGATATCTaGTTCATACGATTTATATTC | + |
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Preference number: 4 (lower is better) Translates to: GEITKPGHSRSWGLTLQGVMEDI*FIRFIF Trigger: GAATATAAATCGTATGAAGCAGATATCCTCCATCAC...CCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | CTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTTTTTCAGAGACTGTTaGTCTTCTGTCATCTTACTT | + |
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Preference number: 4 (lower is better) Translates to: LLRGDHKARAFKKLGSNSFFRDC*SSVILL Trigger: AAGTAAGATGACAGAAGAGCAACAGTCTCTGAAAAA...AGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCACCATTGGCGATCCCATaGTTTTGTCTTCTGCAATCA | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSPLAIP*FCLLQS Trigger: TGATTGCAGAAGACAAAAGCATGGGATCGCCAATGG...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGTTGTCTGTGACTTCTaGATCTCAGTTGATTTAAAG | + |
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Preference number: 4 (lower is better) Translates to: EITKPGHSRSWGLTLQGEVVCDF*ISVDLK Trigger: CTTTAAATCAACTGAGATGCAGAAGTCACAGACAAC...TTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCATTCCGCTCTAGTTCCTaGTTCTTCGTTTCCTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSFRSSS*FFVSSK Trigger: TTTTGAGGAAACGAAGAATCAGGAACTAGAGCGGAA...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCAGACGATCAGCAACTTTaGTTTGAGATGACAAAACTC | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSDDQQL*FEMTKL Trigger: GAGTTTTGTCATCTCAAATCAAAGTTGCTGATCGTC...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCAGATTTGTCTAAAATTTaGCTCTGGGGACCTTTCATG | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSDLSKI*LWGPFM Trigger: CATGAAAGGTCCCCAGAGGCAAATTTTAGACAAATC...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCATTCATTTCACCTTGGTaGTCCTCTAAATCCATGTCA | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSFISPW*SSKSMS Trigger: TGACATGGATTTAGAGGAGCACCAAGGTGAAATGAA...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCACTTCTTCTACACTTCTaGTTTGTTTTTCCTTCGCTT | + |
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Preference number: 4 (lower is better) Translates to: EASLLLASLRMLVDSVGSLLLHF*FVFPSL Trigger: AAGCGAAGGAAAAACAAATCAGAAGTGTAGAAGAAG...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CCA 90 bp | TGCAAACATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGTCTAAAATTTGCCTCTaGGGACCTTTCATGCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: CKHFIDLFNYTSYLSFGESKICL*GPFMPV Trigger: GACTGGCATGAAAGGTCCCCAGAGGCAAATTTTAGA...CTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATGTTTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | CATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGATCACAAACTTTGATTTGAGATaGCAAAACTCCACCAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: HFIDLFNYTSYLSFGEITNFDLR*QNSTSP Trigger: GGGACTGGTGGAGTTTTGTCATCTCAAATCAAAGTT...TGTGATCTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | TGCAAACATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGGAATCTAGCTGTTGCTaGAGTGTATCTAATTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: CKHFIDLFNYTSYLSFGEESSCC*SVSNSC Trigger: GCAGGAATTAGATACACTTCAGCAACAGCTAGATTC...CTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATGTTTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR TCA 90 bp | CATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGATCACAGACTCTTGGTTGCTATaGACTCTTTCATTACGAAGT | + |
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Preference number: 4 (lower is better) Translates to: HFIDLFNYTSYLSFGEITDSWLL*TLSLRS Trigger: ACTTCGTAATGAAAGAGTTCATAGCAACCAAGAGTC...TGTGATCTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | CATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGATCACACATGCTTTTGTCTTCTaGAATCATTTGATCTCGATG | + |
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Preference number: 4 (lower is better) Translates to: HFIDLFNYTSYLSFGEITHAFVF*NHLISM Trigger: CATCGAGATCAAATGATTGCAGAAGACAAAAGCATG...TGTGATCTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR GCA 90 bp | CATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGATCACAAGTGTATCTAATTCCTaGAACAGTTTCTCATTTGTG | + |
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Preference number: 4 (lower is better) Translates to: HFIDLFNYTSYLSFGEITSVSNS*NSFSFV Trigger: CACAAATGAGAAACTGTTGCAGGAATTAGATACACT...TGTGATCTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 90 bp | CGGTACACTCCTGCTTCTGTCTTCAGTGAGGGGATTCAAGGTGTGTaGTGCCAGGCCCAGCAACAATGTGGCCCATGCTTGGTGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RYTPASVFSEGIQGV*CQAQQQCGPCLVLL Trigger: GAGGAGCACCAAGCATGGGCCACATTGTTGCTGGGCCTGGCAGCACACACCTTGAATCCCCTCACTGAAGACAGAAGCAGGAGTGTACCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107104.3 |
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| CDS-3UTR CAA 90 bp | GATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGCCTGGTCTTGCTGTTGTaGGTGGCATTGCAGTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: DHKARAFKKLGSNSSRGSLVLLL*VALQLP Trigger: TGGCAACTGCAATGCCACCAACAACAGCAAGACCAG...GCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | AGCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTAACCTGGTCTTGCTGTaGTTGGTGGCATTGCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: SYLSFGEITKPGHSRSWGNLVLL*LVALQL Trigger: CAACTGCAATGCCACCAACAACAGCAAGACCAGGTT...ACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | GATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGCCACGAGAACCTGGTCTaGCTGTTGTTGGTGGCATTG | + |
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Preference number: 5 (lower is better) Translates to: DHKARAFKKLGSNSSRGSHENLV*LLLVAL Trigger: CAATGCCACCAACAACAGCAAGACCAGGTTCTCGTG...GCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | CTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTCAGCAATACAGCCTCTaGTTTTACTTGGGAGTGTGC | + |
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Preference number: 5 (lower is better) Translates to: LSLLRGDHKARAFKKLGSQQYSL*FYLGVC Trigger: GCACACTCCCAAGTAAAACAAGAGGCTGTATTGCTG...AGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | TCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTTCTCCCTTTCCTCCATaGGCGATCCCATGCTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: SFGEITKPGHSRSWGLTLSPFPP*AIPCFC Trigger: ACAAAAGCATGGGATCGCCAATGGAGGAAAGGGAGA...AAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | CGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGATCTTCAGCTCTTGGTaGGTGATGGAGGATATCTGC | + |
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Preference number: 5 (lower is better) Translates to: RGDHKARAFKKLGSNSSRIFSSW*VMEDIC Trigger: GCAGATATCCTCCATCACCAACCAAGAGCTGAAGAT...CCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | TCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCATTACGAAGTTATTTaGCTCCAGGTGCTGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: SFGEITKPGHSRSWGLTLHYEVI*LQVLPL Trigger: AAGTGGCAGCACCTGGAGCAAAATAACTTCGTAATG...AAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | GGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGCTGGTAATCACTCTCTaGACTCTTGGTTGCTATGAA | + |
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Preference number: 5 (lower is better) Translates to: GEITKPGHSRSWGLTLQGLVITL*TLGCYE Trigger: TTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAG...CCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS TCA 90 bp | TCATTCCACTCAAACCTTGTTGGGTCACAGGACGATCAGCAACTTTaGTTTGAGATGACAAAACTCCACCAGTCCCTAAGGGACCACCAC | + |
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Preference number: 5 (lower is better) Translates to: SFHSNLVGSQDDQQL*FEMTKLHQSLRDHH Trigger: GTGGTGGTCCCTTAGGGACTGGTGGAGTTTTGTCATCTCAAATCAAAGTTGCTGATCGTCCTGTGACCCAACAAGGTTTGAGTGGAATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS-3UTR CAA 90 bp | AGCTATCTCTCCTTCGGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTGTAAGTTCACTTATTTaGCTCCTAAGAAGTCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: SYLSFGEITKPGHSRSWGVSSLI*LLRSPR Trigger: TCTTGGACTTCTTAGGAGCAAAATAAGTGAACTTAC...ACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCCGAAGGAGAGATAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | GGGGAGATCACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGAAGCTCCTTGTATTTTaGATTCATTTCACCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: GEITKPGHSRSWGLTLQGKLLVF*IHFTLV Trigger: CACCAAGGTGAAATGAATCAAAAATACAAGGAGCTT...CCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGTGATCTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 90 bp | GTCTGTGACTTCTGCATCTCAGTTGATTTAAAGCTGAGGTCATCCTaGATCATCTTCAGCTCTTGGTTGGTGATGGAGGATATCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: VCDFCISVDLKLRSS*IIFSSWLVMEDICF Trigger: GAAGCAGATATCCTCCATCACCAACCAAGAGCTGAAGATGATGCAGGATGACCTCAGCTTTAAATCAACTGAGATGCAGAAGTCACAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | ACAAAGCCAGGGCATTCAAGAAGCTGGGGTCTAACTCTTCAAGGGGAAGCTAGTATGTGTCTCATTGTCTaGAAGTTGCCTTTTAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: TKPGHSRSWGLTLQGEASMCLIV*KLPFKG Trigger: ACCCTTAAAAGGCAACTTCAAGACAATGAGACACAT...ACTAGCTTCCCCTTGAAGAGTTAGACCCCAGCTTCTTGAATGCCCTGGCTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 90 bp | TCATCCTGCATCATCTTCAGCTCTTGGTTGGTGATGGAGGATATCTaGTTCATACGATTTATATTCCGACTGCAATGCTCTAACAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: SSCIIFSSWLVMEDI*FIRFIFRLQCSNSV Trigger: CACACTGTTAGAGCATTGCAGTCGGAATATAAATCGTATGAAGCAGATATCCTCCATCACCAACCAAGAGCTGAAGATGATGCAGGATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | TGCAAACATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGTCCACTCAAACCTTGTaGGGTCACAGGACGATCAGC | + |
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Preference number: 5 (lower is better) Translates to: CKHFIDLFNYTSYLSFGESTQTL*GHRTIS Trigger: GCTGATCGTCCTGTGACCCAACAAGGTTTGAGTGGA...CTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATGTTTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | GAAGCTAGTTTACTTTTAGCATCCTTGAGGATGCTTGTAGACTCAGTCGGCTCATGCTGCTTGCTTTTCTaGTTCAACTTCTTCTTCTAC | + |
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Preference number: 5 (lower is better) Translates to: EASLLLASLRMLVDSVGSCCLLF*FNFFFY Trigger: GTAGAAGAAGAAGTTGAACAAGAAAAGCAAGCAGCA...TGAGCCGACTGAGTCTACAAGCATCCTCAAGGATGCTAAAAGTAAACTAGCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS TCA 90 bp | AGTGTGATGATGCTGGCTTCTATCTGTGCCTTCCGCTCTAGTTCCTaGTTCTTCGTTTCCTCAAAAGTCTCTATAAAAGCATCCATATTT | + |
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Preference number: 5 (lower is better) Translates to: SVMMLASICAFRSSS*FFVSSKVSIKASIF Trigger: AAATATGGATGCTTTTATAGAGACTTTTGAGGAAACGAAGAATCAGGAACTAGAGCGGAAGGCACAGATAGAAGCCAGCATCATCACACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 90 bp | CACATTTTTAATCACCGGCTGGTAATCACTCTCTTGACTCTTGGTTaGTATGAACTCTTTCATTACGAAGTTATTTTGCTCCAGGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: HIFNHRLVITLLTLG*YELFHYEVILLQVL Trigger: CAGCACCTGGAGCAAAATAACTTCGTAATGAAAGAGTTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAGCCGGTGATTAAAAATGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CCA 90 bp | ATTATCTTCTTTAACCTGCTTAAGCAATCTCTCCCTTTCCTCCATTaGCGATCCCATGCTTTTGTCTTCTGCAATCATTTGATCTCGATG | + |
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Preference number: 5 (lower is better) Translates to: IIFFNLLKQSLPFLH*RSHAFVFCNHLISM Trigger: CATCGAGATCAAATGATTGCAGAAGACAAAAGCATGGGATCGCCAATGGAGGAAAGGGAGAGATTGCTTAAGCAGGTTAAAGAAGATAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS GCA 90 bp | TTTAAAGCTGCCAGGTCACTGTATGTCTCCAGGTCAGCAGTCATTTaGTTAATTTTGTTTTTCAGAGACTGTTGCTCTTCTGTCATCTTA | + |
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Preference number: 5 (lower is better) Translates to: FKAARSLYVSRSAVI*LILFFRDCCSSVIL Trigger: TAAGATGACAGAAGAGCAACAGTCTCTGAAAAACAAAATTAAGCAAATGACTGCTGACCTGGAGACATACAGTGACCTGGCAGCTTTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS TCA 90 bp | ATGTGTCTCATTGTCTTGAAGTTGCCTTTTAAGGGTATCATAATCTaGGGTCAGCTTCTCCATTATTTTCTTAAAGGCATTTCTGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: MCLIVLKLPFKGIII*GQLLHYFLKGISVS Trigger: ACTCACAGAAATGCCTTTAAGAAAATAATGGAGAAGCTGACCTCAGATTATGATACCCTTAAAAGGCAACTTCAAGACAATGAGACACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS-3UTR CAA 90 bp | CATTTTATTGACTTATTTAACTATACAAGCTATCTCTCCTTCGGGGAGATCACAAGGCATTTCTGTGAGTaGACAATACTGTTCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: HFIDLFNYTSYLSFGEITRHFCE*TILFFL Trigger: AAGAAAGAACAGTATTGTCAACTCACAGAAATGCCT...TGTGATCTCCCCGAAGGAGAGATAGCTTGTATAGTTAAATAAGTCAATAAAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 72 bp | GCTTCTGTCTTCAGTGAGGGGATTCAAGGTGTGTGCTaGCAGGCCCAGCAACAATGTGGCCCATGCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: ASVFSEGIQGVC*QAQQQCGPCLV Trigger: CACCAAGCATGGGCCACATTGTTGCTGGGCCTGGCAGCACACACCTTGAATCCCCTCACTGAAGACAGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107104.3 |
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| CDS CAA 90 bp | CTCCACCAGTCCCTAAGGGACCACCACGAGAACCTGGTCTTGCTGTaGTTGGTGGCATTGCAGTTGCCACTCGAACATTGCCAGATGGAG | + |
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Preference number: 6 (lower is better) Translates to: LHQSLRDHHENLVLL*LVALQLPLEHCQME Trigger: CTCCATCTGGCAATGTTCGAGTGGCAACTGCAATGCCACCAACAACAGCAAGACCAGGTTCTCGTGGTGGTCCCTTAGGGACTGGTGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS TCA 72 bp | TCAAATTCACCGGTACACTCCTGCTTCTGTCTTCAGTaGGGGGATTCAAGGTGTGTGCTGCCAGGCCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SNSPVHSCFCLQ*GDSRCVLPGPA Trigger: TGCTGGGCCTGGCAGCACACACCTTGAATCCCCTCACTGAAGACAGAAGCAGGAGTGTACCGGTGAATTTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107104.3 |
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| CDS CAA 90 bp | ACAAAACTCCACCAGTCCCTAAGGGACCACCACGAGAACCTGGTCTaGCTGTTGTTGGTGGCATTGCAGTTGCCACTCGAACATTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: TKLHQSLRDHHENLV*LLLVALQLPLEHCQ Trigger: CTGGCAATGTTCGAGTGGCAACTGCAATGCCACCAACAACAGCAAGACCAGGTTCTCGTGGTGGTCCCTTAGGGACTGGTGGAGTTTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS GCA 72 bp | ACCACGAGAACCTGGTCTTGCTGTTGTTGGTGGCATTaGAGTTGCCACTCGAACATTGCCAGATGGAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: TTRTWSCCCWWH*SCHSNIARWRS Trigger: AGACCTCCATCTGGCAATGTTCGAGTGGCAACTGCAATGCCACCAACAACAGCAAGACCAGGTTCTCGTGGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS GCA 72 bp | CTGTTGTTGGTGGCATTGCAGTTGCCACTCGAACATTaGCAGATGGAGGTCTTATTCCAGAAGGAGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LLLVALQLPLEH*QMEVLFQKEAF Trigger: GAAGGCCTCCTTCTGGAATAAGACCTCCATCTGGCAATGTTCGAGTGGCAACTGCAATGCCACCAACAACAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS CAA 72 bp | GCTGTTGTTGGTGGCATTGCAGTTGCCACTCGAACATaGCCAGATGGAGGTCTTATTCCAGAAGGAGGCCTT | + |
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Preference number: 6 (lower is better) Translates to: AVVGGIAVATRT*PDGGLIPEGGL Trigger: AAGGCCTCCTTCTGGAATAAGACCTCCATCTGGCAATGTTCGAGTGGCAACTGCAATGCCACCAACAACAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS CAA 72 bp | GGGACCTTTCATGCCAGTCTTCATTCCACTCAAACCTaGTTGGGTCACAGGACGATCAGCAACTTTGATTTG | + |
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Preference number: 6 (lower is better) Translates to: GTFHASLHSTQT*LGHRTISNFDL Trigger: CAAATCAAAGTTGCTGATCGTCCTGTGACCCAACAAGGTTTGAGTGGAATGAAGACTGGCATGAAAGGTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS TCA 72 bp | AGAAGTTCCATTTTCTGTAGATCCAGCTGCAGACGCTaGCTGTCTGAGGTCAAATTCCTAGCTGTTGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RSSIFCRSSCRR*LSEVKFLAVVC Trigger: ACAGACAACAGCTAGGAATTTGACCTCAGACAGTCAGCGTCTGCAGCTGGATCTACAGAAAATGGAACTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 72 bp | TTCTGCATCTCAGTTGATTTAAAGCTGAGGTCATCCTaGATCATCTTCAGCTCTTGGTTGGTGATGGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: FCISVDLKLRSS*IIFSSWLVMED Trigger: ATCCTCCATCACCAACCAAGAGCTGAAGATGATGCAGGATGACCTCAGCTTTAAATCAACTGAGATGCAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CAA 72 bp | ACCTTTCATGCCAGTCTTCATTCCACTCAAACCTTGTaGGGTCACAGGACGATCAGCAACTTTGATTTGAGA | + |
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Preference number: 6 (lower is better) Translates to: TFHASLHSTQTL*GHRTISNFDLR Trigger: TCTCAAATCAAAGTTGCTGATCGTCCTGTGACCCAACAAGGTTTGAGTGGAATGAAGACTGGCATGAAAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS TCA 72 bp | CCGGCTGGTAATCACTCTCTTGACTCTTGGTTGCTATaGACTCTTTCATTACGAAGTTATTTTGCTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: PAGNHSLDSWLL*TLSLRSYFAPG Trigger: ACCTGGAGCAAAATAACTTCGTAATGAAAGAGTTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAGCCGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CCA 72 bp | TTTAACCTGCTTAAGCAATCTCTCCCTTTCCTCCATTaGCGATCCCATGCTTTTGTCTTCTGCAATCATTTG | + |
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Preference number: 6 (lower is better) Translates to: FNLLKQSLPFLH*RSHAFVFCNHL Trigger: CAAATGATTGCAGAAGACAAAAGCATGGGATCGCCAATGGAGGAAAGGGAGAGATTGCTTAAGCAGGTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS CAA 72 bp | AAGCTGAGGTCATCCTGCATCATCTTCAGCTCTTGGTaGGTGATGGAGGATATCTGCTTCATACGATTTATA | + |
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Preference number: 6 (lower is better) Translates to: KLRSSCIIFSSW*VMEDICFIRFI Trigger: TATAAATCGTATGAAGCAGATATCCTCCATCACCAACCAAGAGCTGAAGATGATGCAGGATGACCTCAGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CAA 72 bp | TTTAAAGCTGAGGTCATCCTGCATCATCTTCAGCTCTaGGTTGGTGATGGAGGATATCTGCTTCATACGATT | + |
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Preference number: 6 (lower is better) Translates to: FKAEVILHHLQL*VGDGGYLLHTI Trigger: AATCGTATGAAGCAGATATCCTCCATCACCAACCAAGAGCTGAAGATGATGCAGGATGACCTCAGCTTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CAA 90 bp | GTTGATTTAAAGCTGAGGTCATCCTGCATCATCTTCAGCTCTTGGTaGGTGATGGAGGATATCTGCTTCATACGATTTATATTCCGACTG | + |
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Preference number: 6 (lower is better) Translates to: VDLKLRSSCIIFSSW*VMEDICFIRFIFRL Trigger: CAGTCGGAATATAAATCGTATGAAGCAGATATCCTCCATCACCAACCAAGAGCTGAAGATGATGCAGGATGACCTCAGCTTTAAATCAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CAA 72 bp | CTTGGTTGCTATGAACTCTTTCATTACGAAGTTATTTaGCTCCAGGTGCTGCCACTTCCTCTCCAAATTTGT | + |
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Preference number: 6 (lower is better) Translates to: LGCYELFHYEVI*LQVLPLPLQIC Trigger: ACAAATTTGGAGAGGAAGTGGCAGCACCTGGAGCAAAATAACTTCGTAATGAAAGAGTTCATAGCAACCAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 72 bp | GATATCTGCTTCATACGATTTATATTCCGACTGCAATaGTCTAACAGTGTGATGATGCTGGCTTCTATCTGT | + |
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Preference number: 6 (lower is better) Translates to: DICFIRFIFRLQ*SNSVMMLASIC Trigger: ACAGATAGAAGCCAGCATCATCACACTGTTAGAGCATTGCAGTCGGAATATAAATCGTATGAAGCAGATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS GCA 72 bp | TTGGTTGCTATGAACTCTTTCATTACGAAGTTATTTTaGTCCAGGTGCTGCCACTTCCTCTCCAAATTTGTA | + |
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Preference number: 6 (lower is better) Translates to: LVAMNSFITKLF*SRCCHFLSKFV Trigger: TACAAATTTGGAGAGGAAGTGGCAGCACCTGGAGCAAAATAACTTCGTAATGAAAGAGTTCATAGCAACCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS CAA 72 bp | CATCACATTTTTAATCACCGGCTGGTAATCACTCTCTaGACTCTTGGTTGCTATGAACTCTTTCATTACGAA | + |
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Preference number: 6 (lower is better) Translates to: HHIFNHRLVITL*TLGCYELFHYE Trigger: TTCGTAATGAAAGAGTTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAGCCGGTGATTAAAAATGTGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS TCA 72 bp | CTCTCCTTTTTCATGTTCAGAGAATCTAGCTGTTGCTaGAGTGTATCTAATTCCTGCAACAGTTTCTCATTT | + |
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Preference number: 6 (lower is better) Translates to: LSFFMFRESSCC*SVSNSCNSFSF Trigger: AAATGAGAAACTGTTGCAGGAATTAGATACACTTCAGCAACAGCTAGATTCTCTGAACATGAAAAAGGAGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030311.11 ENSMUST00000107104.3 |
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| CDS CAA 90 bp | AATCTGCTTCATCACATTTTTAATCACCGGCTGGTAATCACTCTCTaGACTCTTGGTTGCTATGAACTCTTTCATTACGAAGTTATTTTG | + |
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Preference number: 6 (lower is better) Translates to: NLLHHIFNHRLVITL*TLGCYELFHYEVIL Trigger: CAAAATAACTTCGTAATGAAAGAGTTCATAGCAACCAAGAGTCAAGAGAGTGATTACCAGCCGGTGATTAAAAATGTGATGAAGCAGATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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| CDS TCA 72 bp | ATTGTCTTGAAGTTGCCTTTTAAGGGTATCATAATCTaGGGTCAGCTTCTCCATTATTTTCTTAAAGGCATT | + |
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Preference number: 6 (lower is better) Translates to: IVLKLPFKGIII*GQLLHYFLKGI Trigger: AATGCCTTTAAGAAAATAATGGAGAAGCTGACCTCAGATTATGATACCCTTAAAAGGCAACTTCAAGACAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030311.11 |
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