Pregenerated sensors for IFT57 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032965Ensembl transcript IDs: ENSMUST00000046777.11, ENSMUST00000140914.2, ENSMUST00000142682.9
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTCTGTCTATCTACCTACCTATTGTGTGTGTGTGTCTATGTGTaGACACTTGTGTCTAGGTGTACACATGTGTACAAACCACTGGAG | + |
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Preference number: 1 (lower is better) Translates to: SLCLSTYLLCVCVYV*TLVSRCTHVYKPLE Trigger: CTCCAGTGGTTTGTACACATGTGTACACCTAGACACAAGTGTGCACACATAGACACACACACACAATAGGTAGGTAGATAGACAGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR-3UTR CCA 90 bp | TTACCCACTGAGTCATCTTGCCGGTCCATGAGTTTGAACTTCAGTCCCCTGCTTGTGGTCACTGTAGAATaGTACCAGCTCTGGGCATCC | + |
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Preference number: 2 (lower is better) Translates to: LPTESSCRSMSLNFSPLLVVTVE*YQLWAS Trigger: GGATGCCCAGAGCTGGTACCATTCTACAGTGACCAC...AAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR-3UTR CCA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCAGAATGGTACCAGCTCTaGGCATCCTCAGAGGTACCA | + |
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Preference number: 2 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSEWYQL*ASSEVP Trigger: TGGTACCTCTGAGGATGCCCAGAGCTGGTACCATTC...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR-3UTR CCA 90 bp | AATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCTTTCACCTGTTAACGTaGATACTGAACTTTCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: NKGLSLPEGDHGIHHGGFFHLLT*ILNFLV Trigger: AACAAGAAAGTTCAGTATCCACGTTAACAGGTGAAA...GAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR-3UTR TCA 90 bp | CTCGTTACAGTAGCTGAGCCAAATATGGCAGAGCTACTATTTCAAATACTAGATGTCACAGGATACACATaGTCCATGTGTCACTTAGAC | + |
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Preference number: 2 (lower is better) Translates to: LVTVAEPNMAELLFQILDVTGYT*SMCHLD Trigger: GTCTAAGTGACACATGGATCATGTGTATCCTGTGAC...ATCTAGTATTTGAAATAGTAGCTCTGCCATATTTGGCTCAGCTACTGTAACGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR TCA 72 bp | TCCAGAGCCTGCCTGTCAGACAAGAACTGTGCTAACTaGCCCAGACCCCCAGCCCAGAAAAGCTACTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: SRACLSDKNCAN*PRPPAQKSYSS Trigger: TGAAGAGTAGCTTTTCTGGGCTGGGGGTCTGGGTCAGTTAGCACAGTTCTTGTCTGACAGGCAGGCTCTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR-3UTR CAA 90 bp | AATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCATGAGGCAAGAAAGTTaGGCTTCCTACGAAGAACTC | + |
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Preference number: 3 (lower is better) Translates to: NKGLSLPEGDHGIHHGGFMRQES*ASYEEL Trigger: GAGTTCTTCGTAGGAAGCCAAACTTTCTTGCCTCAT...GAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR GCA 72 bp | TACAGAACCATGTTTGCAGAGCTGACTCCATGTGAATaGATAGGTTGCAGACACAGGCATAGGCATCGTTTC | + |
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Preference number: 3 (lower is better) Translates to: YRTMFAELTPCE*IGCRHRHRHRF Trigger: GAAACGATGCCTATGCCTGTGTCTGCAACCTATGCATTCACATGGAGTCAGCTCTGCAAACATGGTTCTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR TCA 72 bp | CACAGGCATAGGCATCGTTTCCCTCGTTACAGTAGCTaGGCCAAATATGGCAGAGCTACTATTTCAAATACT | + |
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Preference number: 3 (lower is better) Translates to: HRHRHRFPRYSS*AKYGRATISNT Trigger: AGTATTTGAAATAGTAGCTCTGCCATATTTGGCTCAGCTACTGTAACGAGGGAAACGATGCCTATGCCTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR TCA 72 bp | CAGTTATTAGACTTAGTAGCAAGAGCCTTTACCCACTaGGTCATCTTGCCGGTCCATGAGTTTGAACTTCAG | + |
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Preference number: 3 (lower is better) Translates to: QLLDLVARAFTH*VILPVHEFELQ Trigger: CTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAAAGGCTCTTGCTACTAAGTCTAATAACTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | CTCGTTACAGTAGCTGAGCCAAATATGGCAGAGCTACTATTTCAAATACTAGATCACCACAGCCTCCCCTaGGCCTTCCCCGCGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LVTVAEPNMAELLFQILDHHSLP*AFPASP Trigger: CGGGCTCGCGGGGAAGGCGCAGGGGAGGCTGTGGTG...ATCTAGTATTTGAAATAGTAGCTCTGCCATATTTGGCTCAGCTACTGTAACGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR CAA 72 bp | CCTTTACCCACTGAGTCATCTTGCCGGTCCATGAGTTaGAACTTCAGTCCCCTGCTTCACCTGGAGAGCTAC | + |
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Preference number: 4 (lower is better) Translates to: PLPTESSCRSMS*NFSPLLHLESY Trigger: GTAGCTCTCCAGGTGAAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR TCA 90 bp | TTACCCACTGAGTCATCTTGCCGGTCCATGAGTTTGAACTTCAGTCCCCTGCTTGGATCGTCGTATTCTTaGGGCTGCTCAAAGGCACGG | + |
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Preference number: 4 (lower is better) Translates to: LPTESSCRSMSLNFSPLLGSSYS*GCSKAR Trigger: CCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCC...AAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | AATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCGGGGTGACAGCTGCATaGATGTCCCTGGTCATGTTG | + |
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Preference number: 4 (lower is better) Translates to: NKGLSLPEGDHGIHHGGFGVTAA*MSLVML Trigger: CAACATGACCAGGGACATGCATGCAGCTGTCACCCC...GAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCAGTGGTAGGCCGCTCCTaGCCCGCGCTCCACCACAGC | + |
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Preference number: 4 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSVVGRS*PALHHS Trigger: GCTGTGGTGGAGCGCGGGCCAGGAGCGGCCTACCAC...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | ATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCTGTAGAACTGCTCGCCTaGGTTGGTAGGCAGAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: IKDCHYQRVTMGFIMVASVELLA*VGRQSK Trigger: TTTGCTCTGCCTACCAACCCAGGCGAGCAGTTCTAC...AGAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR TCA 90 bp | CATGAGTTTGAACTTCAGTCCCCTGCTTCACCTGGAGAGCTACATCATAGGTGTTCCTTGAGTTTTGACTaGAGTAGCGTGTGCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: HEFELQSPASPGELHHRCSLSFD*SSVCST Trigger: GGTGGAGCACACGCTACTTCAGTCAAAACTCAAGGA...ACACCTATGATGTAGCTCTCCAGGTGAAGCAGGGGACTGAAGTTCAAACTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | ATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCTCTGCATGCATGTCCCTaGTCATGTTGCACTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: IKDCHYQRVTMGFIMVASLHACP*SCCTSP Trigger: AGGAGAAGTGCAACATGACCAGGGACATGCATGCAG...AGAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | CATGAGTTTGAACTTCAGTCCCCTGCTTCACCTGGAGAGCTACATCATAGGTGTGCCACGCAGCAAGAGTaGAAAACATGTAGAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: HEFELQSPASPGELHHRCATQQE*KTCRTA Trigger: AGCAGTTCTACATGTTTTGCACTCTTGCTGCGTGGC...ACACCTATGATGTAGCTCTCCAGGTGAAGCAGGGGACTGAAGTTCAAACTCATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | TTACCCACTGAGTCATCTTGCCGGTCCATGAGTTTGAACTTCAGTCCCCTGCTTTGTCCAAAAACCCCTTaGTCTCCTTCAGAGCAGATT | + |
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Preference number: 4 (lower is better) Translates to: LPTESSCRSMSLNFSPLLCPKTP*SPSEQI Trigger: AATCTGCTCTGAAGGAGACCAAGGGGTTTTTGGACA...AAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | TTACCCACTGAGTCATCTTGCCGGTCCATGAGTTTGAACTTCAGTCCCCTGCTTAGCTTGGTTAAGCTCTaGTTAATCTTCACCAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LPTESSCRSMSLNFSPLLSLVKL*LIFTKG Trigger: TCCTTTGGTGAAGATTAAGCAGAGCTTAACCAAGCT...AAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | TTACCCACTGAGTCATCTTGCCGGTCCATGAGTTTGAACTTCAGTCCCCTGCTTTGCATTTGGTCAACATaGATCCTCCAATCCTTATTG | + |
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Preference number: 4 (lower is better) Translates to: LPTESSCRSMSLNFSPLLCIWST*ILQSLL Trigger: CAATAAGGATTGGAGGATCCATGTTGACCAAATGCA...AAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | CAGTATGCCATTGGTAATGCCAGTGAACACTTCTCTGAACATGATAATTTTAAGCTCTGGGGTGACAGCTaGATGCATGTCCCTGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: QYAIGNASEHFSEHDNFKLWGDS*MHVPGH Trigger: ATGACCAGGGACATGCATGCAGCTGTCACCCCAGAG...CTTAAAATTATCATGTTCAGAGAAGTGTTCACTGGCATTACCAATGGCATACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | AATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCCTGCTAATTTCATTATaGAGCTTGTCCAAAAACCCC | + |
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Preference number: 4 (lower is better) Translates to: NKGLSLPEGDHGIHHGGFLLISL*SLSKNP Trigger: GGGGTTTTTGGACAAGCTCCATAATGAAATTAGCAG...GAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCATGCCGTCCGTCATGCTaGTGCCCTTCTCTTCCATTT | + |
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Preference number: 4 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSCRPSC*CPSLPF Trigger: AAATGGAAGAGAAGGGCAGCAGCATGACGGACGGCA...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| 3UTR CAA 72 bp | AAAAATACTAATGAGCCACCAGGCAGCAGTATGCCATaGGTAATGCCAGTGAACACTTCTCTGAACATGATA | + |
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Preference number: 4 (lower is better) Translates to: KNTNEPPGSSMP*VMPVNTSLNMI Trigger: TATCATGTTCAGAGAAGTGTTCACTGGCATTACCAATGGCATACTGCTGCCTGGTGGCTCATTAGTATTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCAATCGTGACTTTCAGCTaGGGTAGTACACGCTCAACT | + |
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Preference number: 4 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSIVTFS*GSTRST Trigger: AGTTGAGCGTGTACTACCGCAGCTGAAAGTCACGAT...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR GCA 90 bp | CTCGTTACAGTAGCTGAGCCAAATATGGCAGAGCTACTATTTCAAATACTAGATTGTACTTTTCTCGGCTaGCAATCTTTTCCAGAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LVTVAEPNMAELLFQILDCTFLG*QSFPES Trigger: GGACTCTGGAAAAGATTGGCAGCCGAGAAAAGTACA...ATCTAGTATTTGAAATAGTAGCTCTGCCATATTTGGCTCAGCTACTGTAACGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR TCA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCATGTTGCACTTCTCCTTaGGTTTTGACTGAAGTAGCG | + |
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Preference number: 4 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSCCTSP*VLTEVA Trigger: CGCTACTTCAGTCAAAACTCAAGGAGAAGTGCAACA...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CCA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCAAAATATCTTCTTGTTTaGCAGACTCGTTTGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSKYLLV*QTRLCP Trigger: TGGACACAAACGAGTCTGCCAAACAAGAAGATATTT...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | CTGGGCATCCTCAGAGGTACCAGTCCTCTGTCAGTAGTCCAGAGGGTCACAGGAGGGATCGTCGTATTCTaGAGGCTGCTCAAAGGCACG | + |
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Preference number: 5 (lower is better) Translates to: LGILRGTSPLSVVQRVTGGIVVF*RLLKGT Trigger: CGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCC...TCCTGTGACCCTCTGGACTACTGACAGAGGACTGGTACCTCTGAGGATGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS CCA 90 bp | GATCAGCCACGCAGCAAGAGTGCAAAACATGTAGAACTGCTCGCCTaGGTTGGTAGGCAGAGCAAAGTAGTGTCTGGACGGGGGCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: DQPRSKSAKHVELLA*VGRQSKVVSGRGLQ Trigger: CTGAAGCCCCCGTCCAGACACTACTTTGCTCTGCCTACCAACCCAGGCGAGCAGTTCTACATGTTTTGCACTCTTGCTGCGTGGCTGATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | CTGGGCATCCTCAGAGGTACCAGTCCTCTGTCAGTAGTCCAGAGGGTCACAGGAGATTCAATCCCACTTTaGTGCTGGTGCATTTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: LGILRGTSPLSVVQRVTGDSIPL*CWCIWS Trigger: TGACCAAATGCACCAGCACAAAAGTGGGATTGAATC...TCCTGTGACCCTCTGGACTACTGACAGAGGACTGGTACCTCTGAGGATGCCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS TCA 90 bp | GATCGTCGTATTCTTGAGGCTGCTCAAAGGCACGGCCAGTTTTGTTaGTCAGCCACGCAGCAAGAGTGCAAAACATGTAGAACTGCTCGC | + |
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Preference number: 5 (lower is better) Translates to: DRRILEAAQRHGQFC*SATQQECKTCRTAR Trigger: GCGAGCAGTTCTACATGTTTTGCACTCTTGCTGCGTGGCTGATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | AATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCGCACGGCCAGTTTTGTaGATCAGCCACGCAGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: NKGLSLPEGDHGIHHGGFARPVL*ISHAAR Trigger: TCTTGCTGCGTGGCTGATCAACAAAACTGGCCGTGC...GAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | CTGGGCATCCTCAGAGGTACCAGTCCTCTGTCAGTAGTCCAGAGGGTCACAGGAAAAATATCTTCTTGTTaGGCAGACTCGTTTGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: LGILRGTSPLSVVQRVTGKISSC*ADSFVS Trigger: GGACACAAACGAGTCTGCCAAACAAGAAGATATTTT...TCCTGTGACCCTCTGGACTACTGACAGAGGACTGGTACCTCTGAGGATGCCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS GCA 90 bp | TGGATCCTCCAATCCTTATTGTCAGTCCTAATCGTGACTTTCAGCTaGGGTAGTACACGCTCAACTTCTAGGCTCCATTCCGCAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: WILQSLLSVLIVTFS*GSTRSTSRLHSAAS Trigger: AGATGCTGCGGAATGGAGCCTAGAAGTTGAGCGTGTACTACCGCAGCTGAAAGTCACGATTAGGACTGACAATAAGGATTGGAGGATCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046777.11 ENSMUST00000140914.2 ENSMUST00000142682.9 |
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| CDS-3UTR CAA 90 bp | CATGAGTTTGAACTTCAGTCCCCTGCTTCACCTGGAGAGCTACATCATAGGTGTGGCCCCACGATATTCTaGAACCAAGTGCTCAAGTTG | + |
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Preference number: 5 (lower is better) Translates to: HEFELQSPASPGELHHRCGPTIF*NQVLKL Trigger: CAACTTGAGCACTTGGTTCAAGAATATCGTGGGGCC...ACACCTATGATGTAGCTCTCCAGGTGAAGCAGGGGACTGAAGTTCAAACTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS TCA 90 bp | TCTCCTCTTCCTGAGTGCAGCTGGTTGTGGGGTGTGGGTAGGAAGTaGCCCTTTGAGATTCAATCTGTTCTATACACAGAAAATAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SPLPECSWLWGVGRK*PFEIQSVLYTENKQ Trigger: CTGCTTATTTTCTGTGTATAGAACAGATTGAATCTCAAAGGGTCACTTCCTACCCACACCCCACAACCAGCTGCACTCAGGAAGAGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140914.2 |
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| CDS GCA 90 bp | AGTTCTCCCAAAAGAGCGAAGCTCAGAGAGTATATTAGATATAGTTaGATTGGGATCGTCGTATTCTTGAGGCTGCTCAAAGGCACGGCC | + |
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Preference number: 5 (lower is better) Translates to: SSPKRAKLREYIRYS*IGIVVFLRLLKGTA Trigger: GGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAATATACTCTCTGAGCTTCGCTCTTTTGGGAGAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS-3UTR CAA 90 bp | TTACCCACTGAGTCATCTTGCCGGTCCATGAGTTTGAACTTCAGTCCCCTGCTTATCCTCCAATCCTTATaGTCAGTCCTAATCGTGACT | + |
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Preference number: 5 (lower is better) Translates to: LPTESSCRSMSLNFSPLLILQSL*SVLIVT Trigger: AGTCACGATTAGGACTGACAATAAGGATTGGAGGAT...AAGCAGGGGACTGAAGTTCAAACTCATGGACCGGCAAGATGACTCAGTGGGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | CAGTATGCCATTGGTAATGCCAGTGAACACTTCTCTGAACATGATAATTTTAAGGCTGGTAGCGCTCCCTaGCCTCACTTAGCTGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: QYAIGNASEHFSEHDNFKAGSAP*PHLAGL Trigger: AAGCCCAGCTAAGTGAGGCAAGGGAGCGCTACCAGC...CTTAAAATTATCATGTTCAGAGAAGTGTTCACTGGCATTACCAATGGCATACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS TCA 90 bp | TCAGAGAGTATATTAGATATAGTTGCATTGGGATCGTCGTATTCTTaGGGCTGCTCAAAGGCACGGCCAGTTTTGTTGATCAGCCACGCA | + |
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Preference number: 5 (lower is better) Translates to: SESILDIVALGSSYS*GCSKARPVLLISHA Trigger: TGCGTGGCTGATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAATATACTCTCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS-3UTR CAA 90 bp | AATAAAGGACTGTCACTACCAGAGGGTGACCATGGGATTCATCATGGTGGCTTCAAGAACATAGCACACTaGTTCTCCGTAACCAGACTT | + |
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Preference number: 5 (lower is better) Translates to: NKGLSLPEGDHGIHHGGFKNIAH*FSVTRL Trigger: AAGTCTGGTTACGGAGAACAAGTGTGCTATGTTCTT...GAAGCCACCATGATGAATCCCATGGTCACCCTCTGGTAGTGACAGTCCTTTATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCAAAGGCACGGCCAGTTTaGTTGATCAGCCACGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSKARPV*LISHAA Trigger: TGCTGCGTGGCTGATCAACAAAACTGGCCGTGCCTT...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | ACGTGGATACTGAACTTTCTTGTTTTTACAGTTAAGGAGGTGGTAATATCAACTTTGTCCAAAAACCCCTaGGTCTCCTTCAGAGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: TWILNFLVFTVKEVVISTLSKNP*VSFRAD Trigger: ATCTGCTCTGAAGGAGACCAAGGGGTTTTTGGACAA...AGTTGATATTACCACCTCCTTAACTGTAAAAACAAGAAAGTTCAGTATCCACGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | AGAAATCATAGTCTAGAAAAATTGCTGAGTAGGGTGCCTAATAAAGGACTGTCAAACCAGACTTTAATTTaGAAGGAGGAAAATCTGCAG | + |
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Preference number: 5 (lower is better) Translates to: RNHSLEKLLSRVPNKGLSNQTLI*KEENLQ Trigger: CTGCAGATTTTCCTCCTTCAAAATTAAAGTCTGGTT...TGACAGTCCTTTATTAGGCACCCTACTCAGCAATTTTTCTAGACTATGATTTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS-3UTR CAA 90 bp | CAGTATGCCATTGGTAATGCCAGTGAACACTTCTCTGAACATGATAATTTTAAGTTCCAAAATATCTTCTaGTTTGGCAGACTCGTTTGT | + |
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Preference number: 5 (lower is better) Translates to: QYAIGNASEHFSEHDNFKFQNIF*FGRLVC Trigger: ACAAACGAGTCTGCCAAACAAGAAGATATTTTGGAA...CTTAAAATTATCATGTTCAGAGAAGTGTTCACTGGCATTACCAATGGCATACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS CAA 72 bp | CAGTTACTCCGCCATTGCCCTGCTGGTAGCGCTCCCTaGCCTCACTTAGCTGGGCTTGGGCCCCACGATATT | + |
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Preference number: 6 (lower is better) Translates to: QLLRHCPAGSAP*PHLAGLGPHDI Trigger: AATATCGTGGGGCCCAAGCCCAGCTAAGTGAGGCAAGGGAGCGCTACCAGCAGGGCAATGGCGGAGTAACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046777.11 ENSMUST00000140914.2 ENSMUST00000142682.9 |
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| CDS GCA 72 bp | GCAGAGCAAAGTAGTGTCTGGACGGGGGCTTCAGATTaGTCTTTCGGAGTAGCTCCTCCTCGTAGCGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: AEQSSVWTGASD*SFGVAPPRSGA Trigger: TGCTCCGCTACGAGGAGGAGCTACTCCGAAAGAGCAATCTGAAGCCCCCGTCCAGACACTACTTTGCTCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS CCA 72 bp | CGCAGCAAGAGTGCAAAACATGTAGAACTGCTCGCCTaGGTTGGTAGGCAGAGCAAAGTAGTGTCTGGACGG | + |
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Preference number: 6 (lower is better) Translates to: RSKSAKHVELLA*VGRQSKVVSGR Trigger: CCGTCCAGACACTACTTTGCTCTGCCTACCAACCCAGGCGAGCAGTTCTACATGTTTTGCACTCTTGCTGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS TCA 72 bp | ATTCTTGAGGCTGCTCAAAGGCACGGCCAGTTTTGTTaGTCAGCCACGCAGCAAGAGTGCAAAACATGTAGA | + |
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Preference number: 6 (lower is better) Translates to: ILEAAQRHGQFC*SATQQECKTCR Trigger: TCTACATGTTTTGCACTCTTGCTGCGTGGCTGATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046777.11 |
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| CDS TCA 72 bp | TCCCTGGTCATGTTGCACTTCTCCTTGAGTTTTGACTaGAGTAGCGTGTGCTCCACCACACCGATTCTAATG | + |
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Preference number: 6 (lower is better) Translates to: SLVMLHFSLSFD*SSVCSTTPILM Trigger: CATTAGAATCGGTGTGGTGGAGCACACGCTACTTCAGTCAAAACTCAAGGAGAAGTGCAACATGACCAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046777.11 ENSMUST00000140914.2 ENSMUST00000142682.9 |
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| CDS TCA 72 bp | CCTGAGTGCAGCTGGTTGTGGGGTGTGGGTAGGAAGTaGCCCTTTGAGATTCAATCTGTTCTATACACAGAA | + |
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Preference number: 6 (lower is better) Translates to: PECSWLWGVGRK*PFEIQSVLYTE Trigger: TTCTGTGTATAGAACAGATTGAATCTCAAAGGGTCACTTCCTACCCACACCCCACAACCAGCTGCACTCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140914.2 |
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| CDS CAA 90 bp | CTCAGAGAGTATATTAGATATAGTTGCATTGGGATCGTCGTATTCTaGAGGCTGCTCAAAGGCACGGCCAGTTTTGTTGATCAGCCACGC | + |
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Preference number: 6 (lower is better) Translates to: LREYIRYSCIGIVVF*RLLKGTASFVDQPR Trigger: GCGTGGCTGATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAATATACTCTCTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS CAA 72 bp | TTCCGCAGCATCTGTCGTAGATTCCAAAATATCTTCTaGTTTGGCAGACTCGTTTGTGTCCAAGCGATAGGT | + |
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Preference number: 6 (lower is better) Translates to: FRSICRRFQNIF*FGRLVCVQAIG Trigger: ACCTATCGCTTGGACACAAACGAGTCTGCCAAACAAGAAGATATTTTGGAATCTACGACAGATGCTGCGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046777.11 ENSMUST00000140914.2 ENSMUST00000142682.9 |
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| CDS TCA 72 bp | ATATTAGATATAGTTGCATTGGGATCGTCGTATTCTTaGGGCTGCTCAAAGGCACGGCCAGTTTTGTTGATC | + |
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Preference number: 6 (lower is better) Translates to: ILDIVALGSSYS*GCSKARPVLLI Trigger: GATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS CAA 72 bp | TATATTAGATATAGTTGCATTGGGATCGTCGTATTCTaGAGGCTGCTCAAAGGCACGGCCAGTTTTGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: YIRYSCIGIVVF*RLLKGTASFVD Trigger: ATCAACAAAACTGGCCGTGCCTTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS CAA 72 bp | CATAGCACACTTGTTCTCCGTAACCAGACTTTAATTTaGAAGGAGGAAAATCTGCAGTTCTCCCAAAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: HSTLVLRNQTLI*KEENLQFSQKS Trigger: GCTCTTTTGGGAGAACTGCAGATTTTCCTCCTTCAAAATTAAAGTCTGGTTACGGAGAACAAGTGTGCTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS CAA 90 bp | AATCAAGAACATAGCACACTTGTTCTCCGTAACCAGACTTTAATTTaGAAGGAGGAAAATCTGCAGTTCTCCCAAAAGAGCGAAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: NQEHSTLVLRNQTLI*KEENLQFSQKSEAQ Trigger: CTGAGCTTCGCTCTTTTGGGAGAACTGCAGATTTTCCTCCTTCAAAATTAAAGTCTGGTTACGGAGAACAAGTGTGCTATGTTCTTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS GCA 72 bp | AAAAGAGCGAAGCTCAGAGAGTATATTAGATATAGTTaGATTGGGATCGTCGTATTCTTGAGGCTGCTCAAA | + |
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Preference number: 6 (lower is better) Translates to: KRAKLREYIRYS*IGIVVFLRLLK Trigger: TTTGAGCAGCCTCAAGAATACGACGATCCCAATGCAACTATATCTAATATACTCTCTGAGCTTCGCTCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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| CDS TCA 72 bp | CTAGTTCTTCCACTGGGTATGATGGCCTTTTCCAAGTaGAACCAATATATTTTAAAGCTTCTTCAGCTAAGC | + |
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Preference number: 6 (lower is better) Translates to: LVLPLGMMAFSK*NQYILKLLQLS Trigger: GCTTAGCTGAAGAAGCTTTAAAATATATTGGTTTCACTTGGAAAAGGCCATCATACCCAGTGGAAGAACTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046777.11 ENSMUST00000142682.9 |
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