Pregenerated sensors for IFT52 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017858Ensembl transcript IDs: ENSMUST00000018002.13, ENSMUST00000150396.3
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGTTCTGACACAAACAGCACAGCAGACGCTGGCATCAGTGTGTACTaGCCAGCTCTGCTCACTCTGCTGAACGCTGGCACACTAGATCCC | + |
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Preference number: 1 (lower is better) Translates to: GSDTNSTADAGISVY*PALLTLLNAGTLDP Trigger: GGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGGTCAGTACACACTGATGCCAGCGTCTGCTGTGCTGTTTGTGTCAGAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR CCA 90 bp | TGGCATCAGTGTGTACTGACCAGCTCTGCTCACTCTGCTGAACGCTaGCACACTAGATCCCTCCAGCCTAGCTCTACTGTTTCTACACCA | + |
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Preference number: 1 (lower is better) Translates to: WHQCVLTSSAHSAER*HTRSLQPSSTVSTP Trigger: TGGTGTAGAAACAGTAGAGCTAGGCTGGAGGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGGTCAGTACACACTGATGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR TCA 90 bp | CACTGCCACAGCAACCATGTGTCACTCAAGTGCTGTTATAGGTTCTaGCACAAACAGCACAGCAGACGCTGGCATCAGTGTGTACTGACC | + |
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Preference number: 1 (lower is better) Translates to: HCHSNHVSLKCCYRF*HKQHSRRWHQCVLT Trigger: GGTCAGTACACACTGATGCCAGCGTCTGCTGTGCTGTTTGTGTCAGAACCTATAACAGCACTTGAGTGACACATGGTTGCTGTGGCAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR TCA 90 bp | GAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACAGCGTGGCATCAGTGTGTACTaGCCAGCTCTGCTCACTCTG | + |
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Preference number: 2 (lower is better) Translates to: ESSLPSGHYKGWANLPQRGISVY*PALLTL Trigger: CAGAGTGAGCAGAGCTGGTCAGTACACACTGATGCC...ACGCTGTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR GCA 90 bp | CCAGCTCTGCTCACTCTGCTGAACGCTGGCACACTAGATCCCTCCAGCCTAGCTTGGCGTCTAAGTGTTTaGTTACAGATTACGCTACTG | + |
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Preference number: 2 (lower is better) Translates to: PALLTLLNAGTLDPSSLAWRLSV*LQITLL Trigger: CAGTAGCGTAATCTGTAAGCAAACACTTAGACGCCA...AGCTAGGCTGGAGGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR GCA 90 bp | CTGAGAAGAATTCAAAACCACAGAGCTCAGCGGGCGGGCGGGCAGAAGGTACTTTCAGAAGTTCTGGAATaGCATTTCAGTCACATCAAT | + |
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Preference number: 2 (lower is better) Translates to: LRRIQNHRAQRAGGQKVLSEVLE*HFSHIN Trigger: ATTGATGTGACTGAAATGGCATTCCAGAACTTCTGA...AAGTACCTTCTGCCCGCCCGCCCGCTGAGCTCTGTGGTTTTGAATTCTTCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR TCA 90 bp | CTCCAGCTAGAACAGAAGTTCCATTCTCGAAGGATCATCATCTGTTGTTCATCTGTTGCAAAGAGTGAGTaGCATCACCTGAAGGGCTGC | + |
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Preference number: 2 (lower is better) Translates to: LQLEQKFHSRRIIICCSSVAKSE*HHLKGC Trigger: GCAGCCCTTCAGGTGATGTCACTCACTCTTTGCAAC...AGATGAACAACAGATGATGATCCTTCGAGAATGGAACTTCTGTTCTAGCTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR TCA 90 bp | GAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACAGCGTACACTTAGTAAGCACTaGAGAACTAATGAATGTTGC | + |
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Preference number: 2 (lower is better) Translates to: ESSLPSGHYKGWANLPQRTLSKH*RTNECC Trigger: GCAACATTCATTAGTTCTTCAGTGCTTACTAAGTGT...ACGCTGTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR GCA 90 bp | AAGGTACTTTACAGTCGTCAGAAGTTCTGGAATGCCATTTCAGTCACATCAATACTCCAGGACAGATTGTaGACACTGCCACAGCAACCA | + |
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Preference number: 2 (lower is better) Translates to: KVLYSRQKFWNAISVTSILQDRL*TLPQQP Trigger: TGGTTGCTGTGGCAGTGTGCACAATCTGTCCTGGAG...TATTGATGTGACTGAAATGGCATTCCAGAACTTCTGACGACTGTAAAGTACCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR-3UTR TCA 90 bp | AAGGTACTTTACAGTCGTCAGAAGTTCTGGAATGCCATTTCAGTCACATCAATAGAATGTTGCAAAGAGTaGGTGACATCACCTGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: KVLYSRQKFWNAISVTSIECCKE*VTSPEG Trigger: CCCTTCAGGTGATGTCACTCACTCTTTGCAACATTC...TATTGATGTGACTGAAATGGCATTCCAGAACTTCTGACGACTGTAAAGTACCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR TCA 72 bp | ACAAACAGCACAGCAGACGCTGGCATCAGTGTGTACTaGCCAGCTCTGCTCACTCTGCTGAACGCTGGCACA | + |
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Preference number: 3 (lower is better) Translates to: TNSTADAGISVY*PALLTLLNAGT Trigger: TGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGGTCAGTACACACTGATGCCAGCGTCTGCTGTGCTGTTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR CCA 72 bp | TGTGTACTGACCAGCTCTGCTCACTCTGCTGAACGCTaGCACACTAGATCCCTCCAGCCTAGCTCTACTGTT | + |
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Preference number: 3 (lower is better) Translates to: CVLTSSAHSAER*HTRSLQPSSTV Trigger: AACAGTAGAGCTAGGCTGGAGGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGGTCAGTACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR TCA 72 bp | AGCAACCATGTGTCACTCAAGTGCTGTTATAGGTTCTaGCACAAACAGCACAGCAGACGCTGGCATCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: SNHVSLKCCYRF*HKQHSRRWHQC Trigger: ACACTGATGCCAGCGTCTGCTGTGCTGTTTGTGTCAGAACCTATAACAGCACTTGAGTGACACATGGTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR CCA 72 bp | GGCGGGCAGAAGGTACTTTACAGTCGTCAGAAGTTCTaGAATGCCATTTCAGTCACATCAATATCATGTTCC | + |
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Preference number: 3 (lower is better) Translates to: GGQKVLYSRQKF*NAISVTSISCS Trigger: GGAACATGATATTGATGTGACTGAAATGGCATTCCAGAACTTCTGACGACTGTAAAGTACCTTCTGCCCGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR GCA 72 bp | GCAGAAGGTACTTTACAGTCGTCAGAAGTTCTGGAATaGCATTTCAGTCACATCAATATCATGTTCCAGATG | + |
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Preference number: 3 (lower is better) Translates to: AEGTLQSSEVLE*HFSHINIMFQM Trigger: CATCTGGAACATGATATTGATGTGACTGAAATGGCATTCCAGAACTTCTGACGACTGTAAAGTACCTTCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| 3UTR TCA 72 bp | TTACAAAAGCTCAATCACAGATTTAATTTATGCCAATaGATCATCTCTTCCATCTGGGCACTACAAAGGATG | + |
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Preference number: 3 (lower is better) Translates to: LQKLNHRFNLCQ*IISSIWALQRM Trigger: CATCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGGCATAAATTAAATCTGTGATTGAGCTTTTGTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CAGATTGTGCACACTGCCACAGCAACCATGTGTCACTCAAGTGCTGTTATAGGTGGGAAGACCGCAGGCTaGAGGGCTGGCAGCGGCATC | + |
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Preference number: 4 (lower is better) Translates to: QIVHTATATMCHSSAVIGGKTAG*RAGSGI Trigger: GATGCCGCTGCCAGCCCTTCAGCCTGCGGTCTTCCC...ACCTATAACAGCACTTGAGTGACACATGGTTGCTGTGGCAGTGTGCACAATCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CCAGCTCTGCTCACTCTGCTGAACGCTGGCACACTAGATCCCTCCAGCCTAGCTGTTCAACACTCCGTCTaGAACCAGAGCTTCCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: PALLTLLNAGTLDPSSLAVQHSV*NQSFLR Trigger: CCTAAGGAAGCTCTGGTTTCAGACGGAGTGTTGAAC...AGCTAGGCTGGAGGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CCAGCTCTGCTCACTCTGCTGAACGCTGGCACACTAGATCCCTCCAGCCTAGCTCAGCATCAATCTGGTTaGGGTGGATGTCTCCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: PALLTLLNAGTLDPSSLAQHQSG*GGCLLL Trigger: CAACAGGAGACATCCACCTCAACCAGATTGATGCTG...AGCTAGGCTGGAGGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CTGAGAAGAATTCAAAACCACAGAGCTCAGCGGGCGGGCGGGCAGAAGGTACTTAAGGGTAGACAAAGGTaGGAGCCTGGGCATTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: LRRIQNHRAQRAGGQKVLKGRQR*EPGHCS Trigger: GGAACAATGCCCAGGCTCTCACCTTTGTCTACCCTT...AAGTACCTTCTGCCCGCCCGCCCGCTGAGCTCTGTGGTTTTGAATTCTTCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | AGTGCTGTTATAGGTTCTGACACAAACAGCACAGCAGACGCTGGCATCAGTGTGCGCAGGCTGAAGGGCTaGCAGCGGCATCTCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: SAVIGSDTNSTADAGISVRRLKG*QRHLKL Trigger: CAGTTTGAGATGCCGCTGCCAGCCCTTCAGCCTGCG...CACACTGATGCCAGCGTCTGCTGTGCTGTTTGTGTCAGAACCTATAACAGCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | AGACGCTGGCATCAGTGTGTACTGACCAGCTCTGCTCACTCTGCTGAACGCTGGTCCTCAGCATCAATCTaGTTGAGGTGGATGTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RRWHQCVLTSSAHSAERWSSASI*LRWMSP Trigger: AGGAGACATCCACCTCAACCAGATTGATGCTGAGGA...CCAGCGTTCAGCAGAGTGAGCAGAGCTGGTCAGTACACACTGATGCCAGCGTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | CTGAGAAGAATTCAAAACCACAGAGCTCAGCGGGCGGGCGGGCAGAAGGTACTTTGTCCAGCTGGTAAATaGACAGGTCAAAGAGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LRRIQNHRAQRAGGQKVLCPAGK*TGQRGW Trigger: CCACCCTCTTTGACCTGTCCATTTACCAGCTGGACA...AAGTACCTTCTGCCCGCCCGCCCGCTGAGCTCTGTGGTTTTGAATTCTTCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | CCAGCTCTGCTCACTCTGCTGAACGCTGGCACACTAGATCCCTCCAGCCTAGCTTATTGGTATCAAATCTaGATTCTCCCCCTTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: PALLTLLNAGTLDPSSLAYWYQI*ILPLLP Trigger: TGGGAGAAGGGGGAGAATCCAGATTTGATACCAATA...AGCTAGGCTGGAGGGATCTAGTGTGCCAGCGTTCAGCAGAGTGAGCAGAGCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | CCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACCCTTGGGCAGGCAGGTaGTGTCCAGCTGGTAAATGG | + |
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Preference number: 4 (lower is better) Translates to: PMNHLFHLGTTKDGQTFHPWAGR*CPAGKW Trigger: CCATTTACCAGCTGGACACCACCTGCCTGCCCAAGG...GTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | AATTCGACATTCAAAATCACCATTAGCTGGGATAAGTGGGGATTAGCTGGCCTACACTCGGAGCTGCTCTaGGAGGGTGGCTGTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: NSTFKITISWDKWGLAGLHSELL*EGGCVW Trigger: CCAGACACAGCCACCCTCTCAGAGCAGCTCCGAGTG...TAGGCCAGCTAATCCCCACTTATCCCAGCTAATGGTGATTTTGAATGTCGAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | GCTGTTATAGGTTCTGACACAAACAGCACAGCAGACGCTGGCATCAGTGTGTACTGGTCACTGAACATATaGCACGAACCAAGCACTGCC | + |
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Preference number: 4 (lower is better) Translates to: AVIGSDTNSTADAGISVYWSLNI*HEPSTA Trigger: GGCAGTGCTTGGTTCGTGTCATATGTTCAGTGACCA...GTACACACTGATGCCAGCGTCTGCTGTGCTGTTTGTGTCAGAACCTATAACAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | AAAATCACCATTAGCTGGGATAAGTGGGGATTAGCTGGCCTAAAGGCTGATTCTGCTGCTCTGAGAGGGTaGCTGTGTCTGGTACCATCG | + |
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Preference number: 4 (lower is better) Translates to: KITISWDKWGLAGLKADSAALRG*LCLVPS Trigger: CGATGGTACCAGACACAGCCACCCTCTCAGAGCAGC...AGAATCAGCCTTTAGGCCAGCTAATCCCCACTTATCCCAGCTAATGGTGATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | GCACTACAAAGGATGGGCAAACCTTCCACAGCGTTAGAGAAAAACAAGTACAGACCACTGCTGGCTTCATaGCGCTCAATGTGGCACCAA | + |
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Preference number: 4 (lower is better) Translates to: ALQRMGKPSTALEKNKYRPLLAS*RSMWHQ Trigger: TTGGTGCCACATTGAGCGTCATGAAGCCAGCAGTGG...TCTGTACTTGTTTTTCTCTAACGCTGTGGAAGGTTTGCCCATCCTTTGTAGTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR GCA 90 bp | GATTGTGCACACTGCCACAGCAACCATGTGTCACTCAAGTGCTGTTATAGGTTCAGGCACAGCCTTTCCTaGAGCTCGGCTAATTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: DCAHCHSNHVSLKCCYRFRHSLS*SSANFS Trigger: AGAGAAATTAGCCGAGCTGCAGGAAAGGCTGTGCCT...GAACCTATAACAGCACTTGAGTGACACATGGTTGCTGTGGCAGTGTGCACAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | CTGAGAAGAATTCAAAACCACAGAGCTCAGCGGGCGGGCGGGCAGAAGGTACTTATCCTGTTGATCCTTTaGAAGTTTGCTTGTTACTCC | + |
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Preference number: 4 (lower is better) Translates to: LRRIQNHRAQRAGGQKVLILLIL*KFACYS Trigger: GGAGTAACAAGCAAACTTCCAAAGGATCAACAGGAT...AAGTACCTTCTGCCCGCCCGCCCGCTGAGCTCTGTGGTTTTGAATTCTTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CTGAGAAGAATTCAAAACCACAGAGCTCAGCGGGCGGGCGGGCAGAAGGTACTTCTAAATATTGGTCACTaGACATATGACACGAACCAA | + |
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Preference number: 4 (lower is better) Translates to: LRRIQNHRAQRAGGQKVLLNIGH*TYDTNQ Trigger: TTGGTTCGTGTCATATGTTCAGTGACCAATATTTAG...AAGTACCTTCTGCCCGCCCGCCCGCTGAGCTCTGTGGTTTTGAATTCTTCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | CCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACGTAGTCGGAAATCTCTaGGTCCTCAGCATCAATCTG | + |
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Preference number: 4 (lower is better) Translates to: PMNHLFHLGTTKDGQTFHVVGNL*VLSINL Trigger: CAGATTGATGCTGAGGACCCAGAGATTTCCGACTAC...GTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | AATTCGACATTCAAAATCACCATTAGCTGGGATAAGTGGGGATTAGCTGGCCTAAATGGGTCTGTTCAGTaGGAAGCAGACAGAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: NSTFKITISWDKWGLAGLNGSVQ*EADRAC Trigger: ACAGGCTCTGTCTGCTTCCCACTGAACAGACCCATT...TAGGCCAGCTAATCCCCACTTATCCCAGCTAATGGTGATTTTGAATGTCGAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | GCTGTTATAGGTTCTGACACAAACAGCACAGCAGACGCTGGCATCAGTGTGTACCCTGTTGTAAGCCACTaGAACACAACATCCATAATT | + |
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Preference number: 4 (lower is better) Translates to: AVIGSDTNSTADAGISVYPVVSH*NTTSII Trigger: AATTATGGATGTTGTGTTCCAGTGGCTTACAACAGG...GTACACACTGATGCCAGCGTCTGCTGTGCTGTTTGTGTCAGAACCTATAACAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACCCTTTTTGTATGCATTaGAAAGAATGGTACTCCGCA | + |
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Preference number: 4 (lower is better) Translates to: PMNHLFHLGTTKDGQTFHPFCMH*KEWYSA Trigger: TGCGGAGTACCATTCTTTTCAATGCATACAAAAAGG...GTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | ATTCTCGAAGGATCATCATCTGTTGTTCATCTGGGAGACAGACACTTAGTAAGCTGTCGCCACACTTCCTaGCATAGAATTCCAGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: ILEGSSSVVHLGDRHLVSCRHTS*HRIPGL Trigger: AAGACCTGGAATTCTATGTCAGGAAGTGTGGCGACA...GCTTACTAAGTGTCTGTCTCCCAGATGAACAACAGATGATGATCCTTCGAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CTCCAGCTAGAACAGAAGTTCCATTCTCGAAGGATCATCATCTGTTGTTCATCTCCTGGTTCAGTTTCTTaGACTCCACCACTTGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: LQLEQKFHSRRIIICCSSPGSVS*TPPLGR Trigger: TCTTCCAAGTGGTGGAGTTCAAGAAACTGAACCAGG...AGATGAACAACAGATGATGATCCTTCGAGAATGGAACTTCTGTTCTAGCTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR GCA 90 bp | GAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACAGCGTGATCCTTTGGAAGTTTaGTTGTTACTCCAAGAATGT | + |
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Preference number: 4 (lower is better) Translates to: ESSLPSGHYKGWANLPQRDPLEV*LLLQEC Trigger: ACATTCTTGGAGTAACAAGCAAACTTCCAAAGGATC...ACGCTGTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | GAAGGATCATCATCTGTTGTTCATCTGGGAGACAGACACTTAGTAAGCACTGAATCAATCTGGTTGAGGTaGATGTCTCCTGTTGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: EGSSSVVHLGDRHLVSTESIWLR*MSPVVS Trigger: GCTTACAACAGGAGACATCCACCTCAACCAGATTGA...TTCAGTGCTTACTAAGTGTCTGTCTCCCAGATGAACAACAGATGATGATCCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | CTCCAGCTAGAACAGAAGTTCCATTCTCGAAGGATCATCATCTGTTGTTCATCTTGTTTGGCATCCTGTTaGTCCTTTGGAAGTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LQLEQKFHSRRIIICCSSCLASC*SFGSLL Trigger: AAGCAAACTTCCAAAGGATCAACAGGATGCCAAACA...AGATGAACAACAGATGATGATCCTTCGAGAATGGAACTTCTGTTCTAGCTGGAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CCA 90 bp | ACAGATTTAATTTATGCCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGAACAAAGGTGAGAGCCTaGGCATTGTTCCCACTGTTC | + |
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Preference number: 4 (lower is better) Translates to: TDLIYANESSLPSGHYKGTKVRA*ALFPLF Trigger: GAACAGTGGGAACAATGCCCAGGCTCTCACCTTTGT...TCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGGCATAAATTAAATCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR TCA 90 bp | AATTCGACATTCAAAATCACCATTAGCTGGGATAAGTGGGGATTAGCTGGCCTATCATCTTTCAAGCTCTaGATCTTCCAATTACTCCGA | + |
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Preference number: 4 (lower is better) Translates to: NSTFKITISWDKWGLAGLSSFKL*IFQLLR Trigger: TCGGAGTAATTGGAAGATTCAGAGCTTGAAAGATGA...TAGGCCAGCTAATCCCCACTTATCCCAGCTAATGGTGATTTTGAATGTCGAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR GCA 90 bp | ACAGATTTAATTTATGCCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGAACACGAACCAAGCACTaGCAGCTTTCCAAAACCTTG | + |
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Preference number: 4 (lower is better) Translates to: TDLIYANESSLPSGHYKGTRTKH*QLSKTL Trigger: CAAGGTTTTGGAAAGCTGGCAGTGCTTGGTTCGTGT...TCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGGCATAAATTAAATCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR GCA 90 bp | CTCCAGCTAGAACAGAAGTTCCATTCTCGAAGGATCATCATCTGTTGTTCATCTCACCTCCTTTTTGTATaGATTGAAAAGAATGGTACT | + |
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Preference number: 4 (lower is better) Translates to: LQLEQKFHSRRIIICCSSHLLFV*IEKNGT Trigger: AGTACCATTCTTTTCAATGCATACAAAAAGGAGGTG...AGATGAACAACAGATGATGATCCTTCGAGAATGGAACTTCTGTTCTAGCTGGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS CCA 90 bp | CGGCAACTCCCGGAAACTCGGAGGGAAGACCGCAGGCTGAAGGGCTaGCAGCGGCATCTCAAACTGAGGTTGGACGAGCTGAAGTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: RQLPETRREDRRLKG*QRHLKLRLDELKWF Trigger: GAACCACTTCAGCTCGTCCAACCTCAGTTTGAGATGCCGCTGCCAGCCCTTCAGCCTGCGGTCTTCCCTCCGAGTTTCCGGGAGTTGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | AGCTGGGATAAGTGGGGATTAGCTGGCCTAAAGGCTGATTCTAAGCCCAGGATGCATCTCAAACTGAGGTaGGACGAGCTGAAGTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: SWDKWGLAGLKADSKPRMHLKLR*DELKWF Trigger: GAACCACTTCAGCTCGTCCAACCTCAGTTTGAGATG...CATCCTGGGCTTAGAATCAGCCTTTAGGCCAGCTAATCCCCACTTATCCCAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | AGACGCTGGCATCAGTGTGTACTGACCAGCTCTGCTCACTCTGCTGAACGCTGGCATCCTGTTGATCCTTaGGAAGTTTGCTTGTTACTC | + |
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Preference number: 5 (lower is better) Translates to: RRWHQCVLTSSAHSAERWHPVDP*EVCLLL Trigger: GAGTAACAAGCAAACTTCCAAAGGATCAACAGGATG...CCAGCGTTCAGCAGAGTGAGCAGAGCTGGTCAGTACACACTGATGCCAGCGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | CCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACGTGAGAGCCTGGGCATaGTTCCCACTGTTCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: PMNHLFHLGTTKDGQTFHVRAWA*FPLFSS Trigger: TGAAGAGAACAGTGGGAACAATGCCCAGGCTCTCAC...GTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | CTGAGAAGAATTCAAAACCACAGAGCTCAGCGGGCGGGCGGGCAGAAGGTACTTATGTTTGGCATCCTGTaGATCCTTTGGAAGTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: LRRIQNHRAQRAGGQKVLMFGIL*ILWKFA Trigger: AGCAAACTTCCAAAGGATCAACAGGATGCCAAACAT...AAGTACCTTCTGCCCGCCCGCCCGCTGAGCTCTGTGGTTTTGAATTCTTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS CCA 90 bp | CCAGCTTTCCAAAACCTTGGTTCTTTGAGTGATAGAAAGCTAGAATaGGTCTGTTCAGTGGGAAGCAGACAGAGCCTGTGGATAGCACGG | + |
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Preference number: 5 (lower is better) Translates to: PAFQNLGSLSDRKLE*VCSVGSRQSLWIAR Trigger: CCGTGCTATCCACAGGCTCTGTCTGCTTCCCACTGAACAGACCCATTCTAGCTTTCTATCACTCAAAGAACCAAGGTTTTGGAAAGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018002.13 ENSMUST00000150396.3 |
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| CDS-3UTR CAA 90 bp | CCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGATGGGCAAACCTTCCACTCCTGGTTCAGTTTCTaGAACTCCACCACTTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: PMNHLFHLGTTKDGQTFHSWFSF*NSTTWK Trigger: CTTCCAAGTGGTGGAGTTCAAGAAACTGAACCAGGA...GTGGAAGGTTTGCCCATCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | AATTCGACATTCAAAATCACCATTAGCTGGGATAAGTGGGGATTAGCTGGCCTATCAGCATCAATCTGGTaGAGGTGGATGTCTCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: NSTFKITISWDKWGLAGLSASIW*RWMSPV Trigger: AACAGGAGACATCCACCTCAACCAGATTGATGCTGA...TAGGCCAGCTAATCCCCACTTATCCCAGCTAATGGTGATTTTGAATGTCGAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | GAACAGAAGTTCCATTCTCGAAGGATCATCATCTGTTGTTCATCTGGGAGACAGCTTGAACTCCACCACTaGGAAGAAGATGTGTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: EQKFHSRRIIICCSSGRQLELHH*EEDVFK Trigger: CTTGAACACATCTTCTTCCAAGTGGTGGAGTTCAAG...CTGTCTCCCAGATGAACAACAGATGATGATCCTTCGAGAATGGAACTTCTGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS TCA 90 bp | ACCACTTGGAAGAAGATGTGTTCAAGGATATGTTTGGCATCCTGTTaGTCCTTTGGAAGTTTGCTTGTTACTCCAAGAATGTCGCCACAC | + |
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Preference number: 5 (lower is better) Translates to: TTWKKMCSRICLASC*SFGSLLVTPRMSPH Trigger: GTGTGGCGACATTCTTGGAGTAACAAGCAAACTTCCAAAGGATCAACAGGATGCCAAACATATCCTTGAACACATCTTCTTCCAAGTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS-3UTR CAA 90 bp | ACAGATTTAATTTATGCCAATGAATCATCTCTTCCATCTGGGCACTACAAAGGACCTTTGGAAGTTTGCTaGTTACTCCAAGAATGTCGC | + |
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Preference number: 5 (lower is better) Translates to: TDLIYANESSLPSGHYKGPLEVC*LLQECR Trigger: GCGACATTCTTGGAGTAACAAGCAAACTTCCAAAGG...TCCTTTGTAGTGCCCAGATGGAAGAGATGATTCATTGGCATAAATTAAATCTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS CCA 72 bp | CCGGAAACTCGGAGGGAAGACCGCAGGCTGAAGGGCTaGCAGCGGCATCTCAAACTGAGGTTGGACGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: PETRREDRRLKG*QRHLKLRLDEL Trigger: CAGCTCGTCCAACCTCAGTTTGAGATGCCGCTGCCAGCCCTTCAGCCTGCGGTCTTCCCTCCGAGTTTCCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS GCA 72 bp | GGGTTCTCATCGCCCTCCTGCAGACACACTCGGAGCTaGTCTGAGAGGGTGGCTGTGTCTGGTACCATCGTG | + |
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Preference number: 6 (lower is better) Translates to: GFSSPSCRHTRS*SERVAVSGTIV Trigger: CACGATGGTACCAGACACAGCCACCCTCTCAGAGCAGCTCCGAGTGTGTCTGCAGGAGGGCGATGAGAACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS TCA 72 bp | CAGAGCCTGTGGATAGCACGGCCACTGCTGGCTTCATaGCGCTCAATGTGGCACCAAAAGGGTAGACAAAGG | + |
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Preference number: 6 (lower is better) Translates to: QSLWIARPLLAS*RSMWHQKGRQR Trigger: CCTTTGTCTACCCTTTTGGTGCCACATTGAGCGTCATGAAGCCAGCAGTGGCCGTGCTATCCACAGGCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018002.13 ENSMUST00000150396.3 |
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| CDS CCA 72 bp | GGCTGTGTCTGGTACCATCGTGTAGTCGGAAATCTCTaGGTCCTCAGCATCAATCTGGTTGAGGTGGATGTC | + |
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Preference number: 6 (lower is better) Translates to: GCVWYHRVVGNL*VLSINLVEVDV Trigger: GACATCCACCTCAACCAGATTGATGCTGAGGACCCAGAGATTTCCGACTACACGATGGTACCAGACACAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS TCA 72 bp | AATTCCAGGTCTTCATCAGTACACTTGTTGGTGATCTaGGCCAGGCGCGCCTTCTCAGAGGAGAATGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: NSRSSSVHLLVI*ARRAFSEENVS Trigger: TGAAACATTCTCCTCTGAGAAGGCGCGCCTGGCTCAGATCACCAACAAGTGTACTGATGAAGACCTGGAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS CCA 72 bp | GAAATCTCTGGGTCCTCAGCATCAATCTGGTTGAGGTaGATGTCTCCTGTTGTAAGCCACTGGAACACAACA | + |
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Preference number: 6 (lower is better) Translates to: EISGSSASIWLR*MSPVVSHWNTT Trigger: TGTTGTGTTCCAGTGGCTTACAACAGGAGACATCCACCTCAACCAGATTGATGCTGAGGACCCAGAGATTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS CCA 72 bp | CAAAACCTTGGTTCTTTGAGTGATAGAAAGCTAGAATaGGTCTGTTCAGTGGGAAGCAGACAGAGCCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: QNLGSLSDRKLE*VCSVGSRQSLW Trigger: CCACAGGCTCTGTCTGCTTCCCACTGAACAGACCCATTCTAGCTTTCTATCACTCAAAGAACCAAGGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018002.13 ENSMUST00000150396.3 |
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| CDS CAA 72 bp | GTGGGCCTCCTGGTTCAGTTTCTTGAACTCCACCACTaGGAAGAAGATGTGTTCAAGGATATGTTTGGCATC | + |
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Preference number: 6 (lower is better) Translates to: VGLLVQFLELHH*EEDVFKDMFGI Trigger: GATGCCAAACATATCCTTGAACACATCTTCTTCCAAGTGGTGGAGTTCAAGAAACTGAACCAGGAGGCCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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| CDS TCA 72 bp | TGCAGCTCGGCTAATTTCTCTGTTCAACACTCCGTCTaGAACCAGAGCTTCCTTAGGATGGAAGTACTTGTA | + |
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Preference number: 6 (lower is better) Translates to: CSSANFSVQHSV*NQSFLRMEVLV Trigger: TACAAGTACTTCCATCCTAAGGAAGCTCTGGTTTCAGACGGAGTGTTGAACAGAGAAATTAGCCGAGCTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018002.13 ENSMUST00000150396.3 |
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| CDS CAA 72 bp | ACCATGATTCCGTATTCCTCTAGAAGAAAGTTAATATaGGTATCAAATCTGGATTCTCCCCCTTCTCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: TMIPYSSRRKLI*VSNLDSPPSPS Trigger: GCTGGGAGAAGGGGGAGAATCCAGATTTGATACCAATATTAACTTTCTTCTAGAGGAATACGGAATCATGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018002.13 ENSMUST00000150396.3 |
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| CDS CAA 90 bp | TCATTATTAACCATGATTCCGTATTCCTCTAGAAGAAAGTTAATATaGGTATCAAATCTGGATTCTCCCCCTTCTCCCAGCATCACAAGG | + |
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Preference number: 6 (lower is better) Translates to: SLLTMIPYSSRRKLI*VSNLDSPPSPSITR Trigger: CCTTGTGATGCTGGGAGAAGGGGGAGAATCCAGATTTGATACCAATATTAACTTTCTTCTAGAGGAATACGGAATCATGGTTAATAATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018002.13 ENSMUST00000150396.3 |
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| CDS TCA 72 bp | AAGAAGATGTGTTCAAGGATATGTTTGGCATCCTGTTaGTCCTTTGGAAGTTTGCTTGTTACTCCAAGAATG | + |
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Preference number: 6 (lower is better) Translates to: KKMCSRICLASC*SFGSLLVTPRM Trigger: CATTCTTGGAGTAACAAGCAAACTTCCAAAGGATCAACAGGATGCCAAACATATCCTTGAACACATCTTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018002.13 |
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